EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000009707 (Gene tree)
Gene ID: 103388690
Gene Symbol: prdm1a
Alias: Blimp-1|Blimp1|U boot|narrowminded|nrd|prdm1|u-boot|ubo|wu:fb99c12|zgc:91885
Full Name: PR/SET domain 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 55508 bases
Position: chr13:14846301-14901808
Accession: 103388690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000015142	zf-C2H2	PF00096.26	2.1e-15	1	3
ENSCSEP00000015142	zf-C2H2	PF00096.26	2.1e-15	2	3
ENSCSEP00000015142	zf-C2H2	PF00096.26	2.1e-15	3	3
ENSCSEP00000015111	zf-C2H2	PF00096.26	3.8e-15	1	3
ENSCSEP00000015111	zf-C2H2	PF00096.26	3.8e-15	2	3
ENSCSEP00000015111	zf-C2H2	PF00096.26	3.8e-15	3	3
ENSCSEP00000015120	zf-C2H2	PF00096.26	4e-15	1	3
ENSCSEP00000015120	zf-C2H2	PF00096.26	4e-15	2	3
ENSCSEP00000015120	zf-C2H2	PF00096.26	4e-15	3	3
ENSCSEP00000015142	zf-met	PF12874.7	0.00012	1	1
ENSCSEP00000015111	zf-met	PF12874.7	0.0002	1	1
ENSCSEP00000015120	zf-met	PF12874.7	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000015324	-	2262	-	ENSCSEP00000015142	753 (aa)	-	-
ENSCSET00000015293	-	4527	-	ENSCSEP00000015111	833 (aa)	-	UPI000D6284D3
ENSCSET00000015302	-	4335	XM_008323804	ENSCSEP00000015120	849 (aa)	XP_008322026	UPI0004962B5F

Gene Model

Click here to download ENSCSEG00000009707's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000009707's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000009707	prdm1a	99	45.949	ENSAPOG00000014135	-	99	42.825	Acanthochromis_polyacanthus
ENSCSEG00000009707	prdm1a	60	63.636	ENSACIG00000014426	prdm1b	65	63.636	Amphilophus_citrinellus
ENSCSEG00000009707	prdm1a	99	44.431	ENSACIG00000009747	-	99	41.778	Amphilophus_citrinellus
ENSCSEG00000009707	prdm1a	56	56.962	ENSAOCG00000002230	prdm1b	68	56.962	Amphiprion_ocellaris
ENSCSEG00000009707	prdm1a	69	52.973	ENSAPEG00000019826	prdm1b	67	59.155	Amphiprion_percula
ENSCSEG00000009707	prdm1a	99	84.127	ENSATEG00000021017	prdm1a	99	84.010	Anabas_testudineus
ENSCSEG00000009707	prdm1a	99	45.732	ENSATEG00000014034	-	96	45.096	Anabas_testudineus
ENSCSEG00000009707	prdm1a	58	60.563	ENSATEG00000006924	prdm1b	65	60.563	Anabas_testudineus
ENSCSEG00000009707	prdm1a	61	58.667	ENSACLG00000005487	prdm1b	64	58.667	Astatotilapia_calliptera
ENSCSEG00000009707	prdm1a	100	79.347	ENSCVAG00000019081	prdm1a	100	79.347	Cyprinodon_variegatus
ENSCSEG00000009707	prdm1a	80	52.542	ENSCVAG00000016746	prdm1b	74	53.191	Cyprinodon_variegatus
ENSCSEG00000009707	prdm1a	65	56.338	ENSFHEG00000019848	prdm1b	72	56.338	Fundulus_heteroclitus
ENSCSEG00000009707	prdm1a	99	41.299	ENSGAFG00000013012	-	99	39.111	Gambusia_affinis
ENSCSEG00000009707	prdm1a	76	54.706	ENSGAFG00000016191	prdm1b	67	59.701	Gambusia_affinis
ENSCSEG00000009707	prdm1a	75	52.247	ENSGACG00000002716	prdm1b	56	60.000	Gasterosteus_aculeatus
ENSCSEG00000009707	prdm1a	60	61.972	ENSHBUG00000001475	prdm1b	68	61.972	Haplochromis_burtoni
ENSCSEG00000009707	prdm1a	61	60.563	ENSHCOG00000003617	prdm1b	63	60.563	Hippocampus_comes
ENSCSEG00000009707	prdm1a	57	59.375	ENSIPUG00000013740	prdm1b	63	56.098	Ictalurus_punctatus
ENSCSEG00000009707	prdm1a	54	60.811	ENSKMAG00000011218	prdm1b	70	60.811	Kryptolebias_marmoratus
ENSCSEG00000009707	prdm1a	99	42.946	ENSKMAG00000016247	-	99	41.648	Kryptolebias_marmoratus
ENSCSEG00000009707	prdm1a	100	76.593	ENSKMAG00000017597	prdm1a	98	76.593	Kryptolebias_marmoratus
ENSCSEG00000009707	prdm1a	73	54.802	ENSLBEG00000020955	prdm1b	67	59.336	Labrus_bergylta
ENSCSEG00000009707	prdm1a	75	57.143	ENSLOCG00000004978	prdm1b	93	41.860	Lepisosteus_oculatus
ENSCSEG00000009707	prdm1a	58	58.667	ENSMZEG00005026361	prdm1b	61	58.667	Maylandia_zebra
ENSCSEG00000009707	prdm1a	63	59.211	ENSMMOG00000013458	prdm1b	70	59.211	Mola_mola
ENSCSEG00000009707	prdm1a	99	44.913	ENSMALG00000000462	-	97	44.652	Monopterus_albus
ENSCSEG00000009707	prdm1a	99	45.096	ENSONIG00000014709	-	99	44.025	Oreochromis_niloticus
ENSCSEG00000009707	prdm1a	74	54.802	ENSONIG00000013583	prdm1b	72	54.802	Oreochromis_niloticus
ENSCSEG00000009707	prdm1a	57	61.194	ENSORLG00000010025	prdm1b	66	61.194	Oryzias_latipes
ENSCSEG00000009707	prdm1a	56	61.194	ENSORLG00015009022	prdm1b	65	61.194	Oryzias_latipes_hsok
ENSCSEG00000009707	prdm1a	52	61.792	ENSPKIG00000022335	prdm1b	77	48.705	Paramormyrops_kingsleyae
ENSCSEG00000009707	prdm1a	90	42.857	ENSPFOG00000003103	prdm1b	100	42.837	Poecilia_formosa
ENSCSEG00000009707	prdm1a	58	58.333	ENSPLAG00000018491	prdm1b	67	58.333	Poecilia_latipinna
ENSCSEG00000009707	prdm1a	58	58.333	ENSPMEG00000007869	prdm1b	68	57.746	Poecilia_mexicana
ENSCSEG00000009707	prdm1a	72	53.107	ENSPREG00000011327	prdm1b	67	58.333	Poecilia_reticulata
ENSCSEG00000009707	prdm1a	99	53.511	ENSPVAG00000011732	PRDM1	99	53.528	Pteropus_vampyrus
ENSCSEG00000009707	prdm1a	99	61.240	ENSPNAG00000028442	prdm1a	99	58.463	Pygocentrus_nattereri
ENSCSEG00000009707	prdm1a	54	60.776	ENSSFOG00015021896	prdm1b	72	53.261	Scleropages_formosus
ENSCSEG00000009707	prdm1a	81	51.667	ENSSMAG00000017518	-	76	51.667	Scophthalmus_maximus
ENSCSEG00000009707	prdm1a	68	54.802	ENSSMAG00000020467	prdm1b	64	68.000	Scophthalmus_maximus
ENSCSEG00000009707	prdm1a	99	45.387	ENSSDUG00000000524	-	99	42.652	Seriola_dumerili
ENSCSEG00000009707	prdm1a	59	60.563	ENSSDUG00000020610	prdm1b	65	60.563	Seriola_dumerili
ENSCSEG00000009707	prdm1a	99	44.870	ENSSLDG00000001957	-	99	42.215	Seriola_lalandi_dorsalis
ENSCSEG00000009707	prdm1a	73	54.802	ENSSLDG00000021973	prdm1b	69	60.563	Seriola_lalandi_dorsalis
ENSCSEG00000009707	prdm1a	99	45.704	ENSSPAG00000009830	-	99	42.683	Stegastes_partitus
ENSCSEG00000009707	prdm1a	55	59.155	ENSSPAG00000000803	prdm1b	67	59.155	Stegastes_partitus
ENSCSEG00000009707	prdm1a	83	74.273	ENSTNIG00000003926	prdm1a	99	76.497	Tetraodon_nigroviridis
ENSCSEG00000009707	prdm1a	92	42.717	ENSXCOG00000018920	prdm1b	75	53.107	Xiphophorus_couchianus
ENSCSEG00000009707	prdm1a	71	52.542	ENSXMAG00000016765	prdm1b	68	60.000	Xiphophorus_maculatus