EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000009893 (Gene tree)
Gene ID: 103393952
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 9050 bases
Position: chr18:2410635-2419684
Accession: 103393952
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000015425	DEAD	PF00270.29	1.1e-41	1	1
ENSCSEP00000015402	DEAD	PF00270.29	1.3e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000015591	-	7037	XM_008331078	ENSCSEP00000015402	489 (aa)	XP_008329300	UPI00049655FB
ENSCSET00000015615	-	1368	-	ENSCSEP00000015425	455 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000009893's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000009893's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000009893	-	79	32.152	ENSCSEG00000007687	ddx47	89	32.152
ENSCSEG00000009893	-	76	35.917	ENSCSEG00000005149	ddx19	76	36.986
ENSCSEG00000009893	-	97	81.667	ENSCSEG00000006875	ddx6	99	81.875
ENSCSEG00000009893	-	72	30.894	ENSCSEG00000013051	DDX41	60	30.894
ENSCSEG00000009893	-	75	39.247	ENSCSEG00000014807	eif4a1b	92	39.636
ENSCSEG00000009893	-	77	37.302	ENSCSEG00000021058	eif4a3	92	37.302
ENSCSEG00000009893	-	76	31.401	ENSCSEG00000020970	ddx23	52	31.415
ENSCSEG00000009893	-	81	37.093	ENSCSEG00000015474	DDX39A	93	37.093
ENSCSEG00000009893	-	79	31.407	ENSCSEG00000016139	ddx49	82	31.407
ENSCSEG00000009893	-	67	43.137	ENSCSEG00000002630	ddx1	53	43.137
ENSCSEG00000009893	-	71	31.092	ENSCSEG00000014167	ddx5	58	31.180
ENSCSEG00000009893	-	75	39.516	ENSCSEG00000017054	eif4a2	90	39.516
ENSCSEG00000009893	-	73	37.968	ENSCSEG00000017322	zgc:193690	81	37.968
ENSCSEG00000009893	-	73	31.507	ENSCSEG00000007987	DDX5	57	31.507
ENSCSEG00000009893	-	78	36.176	ENSCSEG00000003434	ddx39aa	91	36.176
ENSCSEG00000009893	-	65	32.153	ENSCSEG00000012161	ddx55	57	32.153
ENSCSEG00000009893	-	74	30.423	ENSCSEG00000010008	ddx52	56	30.423
ENSCSEG00000009893	-	76	31.671	ENSCSEG00000003352	-	54	31.671
ENSCSEG00000009893	-	76	30.846	ENSCSEG00000000900	-	58	30.072

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000009893	-	98	86.402	ENSAPOG00000014829	ddx61	98	86.402	Acanthochromis_polyacanthus
ENSCSEG00000009893	-	77	96.533	ENSAPOG00000023627	-	95	96.533	Acanthochromis_polyacanthus
ENSCSEG00000009893	-	100	94.286	ENSACIG00000018355	-	100	94.286	Amphilophus_citrinellus
ENSCSEG00000009893	-	98	87.238	ENSAOCG00000007627	ddx61	98	87.238	Amphiprion_ocellaris
ENSCSEG00000009893	-	100	94.479	ENSAOCG00000006269	-	100	94.479	Amphiprion_ocellaris
ENSCSEG00000009893	-	100	94.479	ENSAPEG00000021368	-	100	94.479	Amphiprion_percula
ENSCSEG00000009893	-	100	94.479	ENSAPEG00000020642	-	100	94.479	Amphiprion_percula
ENSCSEG00000009893	-	98	87.238	ENSAPEG00000007293	ddx61	98	87.238	Amphiprion_percula
ENSCSEG00000009893	-	97	87.949	ENSATEG00000011302	ddx61	99	87.076	Anabas_testudineus
ENSCSEG00000009893	-	100	93.456	ENSATEG00000005424	-	100	93.456	Anabas_testudineus
ENSCSEG00000009893	-	99	86.542	ENSACLG00000027620	ddx61	100	86.542	Astatotilapia_calliptera
ENSCSEG00000009893	-	100	94.274	ENSACLG00000003260	-	100	94.274	Astatotilapia_calliptera
ENSCSEG00000009893	-	99	88.057	ENSAMXG00000033980	-	100	88.057	Astyanax_mexicanus
ENSCSEG00000009893	-	97	86.975	ENSAMXG00000032542	ddx61	99	86.214	Astyanax_mexicanus
ENSCSEG00000009893	-	100	91.429	ENSCVAG00000011006	-	100	91.429	Cyprinodon_variegatus
ENSCSEG00000009893	-	99	85.010	ENSDARG00000018425	ddx61	99	85.010	Danio_rerio
ENSCSEG00000009893	-	99	90.000	ENSELUG00000022538	-	99	90.000	Esox_lucius
ENSCSEG00000009893	-	98	88.981	ENSELUG00000020545	ddx61	99	88.981	Esox_lucius
ENSCSEG00000009893	-	100	91.207	ENSFHEG00000015487	-	100	91.207	Fundulus_heteroclitus
ENSCSEG00000009893	-	71	87.768	ENSGMOG00000003561	-	100	89.362	Gadus_morhua
ENSCSEG00000009893	-	96	88.632	ENSGMOG00000013762	ddx61	99	88.100	Gadus_morhua
ENSCSEG00000009893	-	100	90.408	ENSGAFG00000015865	-	100	90.408	Gambusia_affinis
ENSCSEG00000009893	-	97	85.072	ENSGACG00000003401	ddx61	99	85.072	Gasterosteus_aculeatus
ENSCSEG00000009893	-	98	95.228	ENSGACG00000002413	-	99	95.228	Gasterosteus_aculeatus
ENSCSEG00000009893	-	100	94.274	ENSHBUG00000017033	-	100	94.274	Haplochromis_burtoni
ENSCSEG00000009893	-	99	86.749	ENSHBUG00000017832	ddx61	100	86.749	Haplochromis_burtoni
ENSCSEG00000009893	-	100	91.002	ENSHCOG00000012238	-	100	91.002	Hippocampus_comes
ENSCSEG00000009893	-	97	84.958	ENSHCOG00000008184	ddx61	97	84.958	Hippocampus_comes
ENSCSEG00000009893	-	97	88.100	ENSIPUG00000008367	-	99	88.100	Ictalurus_punctatus
ENSCSEG00000009893	-	96	86.325	ENSIPUG00000012823	DDX6	99	84.679	Ictalurus_punctatus
ENSCSEG00000009893	-	100	93.252	ENSKMAG00000007213	-	100	93.252	Kryptolebias_marmoratus
ENSCSEG00000009893	-	97	87.866	ENSLBEG00000001740	ddx61	98	87.866	Labrus_bergylta
ENSCSEG00000009893	-	100	92.944	ENSLBEG00000016890	-	100	92.944	Labrus_bergylta
ENSCSEG00000009893	-	97	84.025	ENSLACG00000015214	ddx61	100	84.025	Latimeria_chalumnae
ENSCSEG00000009893	-	77	75.714	ENSLOCG00000004352	ddx61	91	75.714	Lepisosteus_oculatus
ENSCSEG00000009893	-	97	88.161	ENSMAMG00000005321	ddx61	97	88.161	Mastacembelus_armatus
ENSCSEG00000009893	-	100	93.878	ENSMAMG00000005559	-	100	93.878	Mastacembelus_armatus
ENSCSEG00000009893	-	100	94.274	ENSMZEG00005026268	-	100	94.274	Maylandia_zebra
ENSCSEG00000009893	-	99	86.749	ENSMZEG00005003556	ddx61	100	86.749	Maylandia_zebra
ENSCSEG00000009893	-	96	86.752	ENSMMOG00000007415	ddx61	96	86.752	Mola_mola
ENSCSEG00000009893	-	72	76.487	ENSMMOG00000008825	-	92	76.487	Mola_mola
ENSCSEG00000009893	-	100	84.867	ENSMMOG00000013694	-	100	84.867	Mola_mola
ENSCSEG00000009893	-	100	92.638	ENSMALG00000013817	-	100	92.638	Monopterus_albus
ENSCSEG00000009893	-	97	82.063	ENSMALG00000013776	ddx61	96	82.063	Monopterus_albus
ENSCSEG00000009893	-	100	94.286	ENSNBRG00000015075	-	100	94.286	Neolamprologus_brichardi
ENSCSEG00000009893	-	98	85.843	ENSNBRG00000015800	ddx61	99	85.843	Neolamprologus_brichardi
ENSCSEG00000009893	-	98	86.820	ENSONIG00000011418	ddx61	99	86.820	Oreochromis_niloticus
ENSCSEG00000009893	-	100	94.479	ENSONIG00000013748	-	100	94.479	Oreochromis_niloticus
ENSCSEG00000009893	-	100	91.207	ENSORLG00000009178	-	100	91.207	Oryzias_latipes
ENSCSEG00000009893	-	100	91.411	ENSORLG00020015515	-	100	91.411	Oryzias_latipes_hni
ENSCSEG00000009893	-	100	91.207	ENSORLG00015006764	-	100	91.207	Oryzias_latipes_hsok
ENSCSEG00000009893	-	97	84.534	ENSOMEG00000022326	-	99	84.534	Oryzias_melastigma
ENSCSEG00000009893	-	97	90.546	ENSPKIG00000024264	ddx61	99	89.528	Paramormyrops_kingsleyae
ENSCSEG00000009893	-	98	90.869	ENSPMGG00000013355	-	99	90.869	Periophthalmus_magnuspinnatus
ENSCSEG00000009893	-	100	90.650	ENSPFOG00000005750	-	100	90.650	Poecilia_formosa
ENSCSEG00000009893	-	100	90.650	ENSPLAG00000000403	-	100	90.650	Poecilia_latipinna
ENSCSEG00000009893	-	100	91.020	ENSPMEG00000023737	-	100	91.020	Poecilia_mexicana
ENSCSEG00000009893	-	100	94.274	ENSPNYG00000003986	-	100	94.274	Pundamilia_nyererei
ENSCSEG00000009893	-	99	80.769	ENSPNYG00000015045	ddx61	100	80.769	Pundamilia_nyererei
ENSCSEG00000009893	-	99	85.656	ENSPNAG00000024072	ddx61	100	85.656	Pygocentrus_nattereri
ENSCSEG00000009893	-	99	89.024	ENSPNAG00000008742	-	100	89.024	Pygocentrus_nattereri
ENSCSEG00000009893	-	96	90.084	ENSSFOG00015021404	ddx61	99	88.163	Scleropages_formosus
ENSCSEG00000009893	-	96	87.420	ENSSMAG00000006591	ddx61	97	86.441	Scophthalmus_maximus
ENSCSEG00000009893	-	100	94.070	ENSSMAG00000001793	-	100	94.070	Scophthalmus_maximus
ENSCSEG00000009893	-	96	89.126	ENSSDUG00000009713	ddx61	97	88.584	Seriola_dumerili
ENSCSEG00000009893	-	100	95.510	ENSSDUG00000007530	-	100	95.510	Seriola_dumerili
ENSCSEG00000009893	-	100	95.510	ENSSLDG00000007608	-	100	95.510	Seriola_lalandi_dorsalis
ENSCSEG00000009893	-	96	89.126	ENSSLDG00000000132	ddx61	97	88.584	Seriola_lalandi_dorsalis
ENSCSEG00000009893	-	100	94.888	ENSSPAG00000013878	-	100	94.888	Stegastes_partitus
ENSCSEG00000009893	-	96	88.675	ENSSPAG00000001578	ddx61	98	87.421	Stegastes_partitus
ENSCSEG00000009893	-	99	91.189	ENSTRUG00000012432	-	99	91.189	Takifugu_rubripes
ENSCSEG00000009893	-	98	91.667	ENSTNIG00000003560	-	100	91.667	Tetraodon_nigroviridis
ENSCSEG00000009893	-	100	81.224	ENSXCOG00000001406	-	100	81.224	Xiphophorus_couchianus
ENSCSEG00000009893	-	100	90.612	ENSXMAG00000016090	-	100	90.612	Xiphophorus_maculatus