EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000010058 (Gene tree)
Gene ID: -
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 3589 bases
Position: chr18:2439526-2443114
Accession: 103393948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000015690	RRM_1	PF00076.22	7.5e-31	1	2
ENSCSEP00000015690	RRM_1	PF00076.22	7.5e-31	2	2
ENSCSEP00000015725	RRM_1	PF00076.22	1.1e-21	1	1
ENSCSEP00000015746	RRM_1	PF00076.22	7.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000015920	-	882	-	ENSCSEP00000015725	293 (aa)	-	-
ENSCSET00000015941	-	486	-	ENSCSEP00000015746	161 (aa)	-	-
ENSCSET00000015884	-	1083	XM_008331072	ENSCSEP00000015690	360 (aa)	XP_008329294	-

Gene Model

Click here to download ENSCSEG00000010058's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000010058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000010058	srsf4	74	51.200	ENSCSEG00000014272	-	67	48.588
ENSCSEG00000010058	srsf4	74	40.800	ENSCSEG00000015663	srsf9	73	43.005
ENSCSEG00000010058	srsf4	76	76.230	ENSCSEG00000019778	SRSF6	90	72.868
ENSCSEG00000010058	srsf4	74	63.566	ENSCSEG00000003801	srsf5b	63	63.351
ENSCSEG00000010058	srsf4	60	40.404	ENSCSEG00000006378	srsf7a	55	45.455
ENSCSEG00000010058	srsf4	74	62.222	ENSCSEG00000008109	srsf5a	77	52.282
ENSCSEG00000010058	srsf4	74	47.101	ENSCSEG00000009973	-	69	52.198

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000010058	srsf4	75	82.927	ENSG00000116350	SRSF4	53	83.333	Homo_sapiens
ENSCSEG00000010058	srsf4	83	95.588	ENSAPOG00000020244	srsf4	67	95.588	Acanthochromis_polyacanthus
ENSCSEG00000010058	srsf4	76	91.803	ENSACIG00000018649	srsf4	93	84.800	Amphilophus_citrinellus
ENSCSEG00000010058	srsf4	75	95.041	ENSAOCG00000005997	srsf4	92	87.059	Amphiprion_ocellaris
ENSCSEG00000010058	srsf4	61	70.811	ENSAPEG00000020826	srsf4	59	64.171	Amphiprion_percula
ENSCSEG00000010058	srsf4	51	96.341	ENSAPEG00000020870	-	64	100.000	Amphiprion_percula
ENSCSEG00000010058	srsf4	73	90.244	ENSATEG00000005680	srsf4	60	91.304	Anabas_testudineus
ENSCSEG00000010058	srsf4	79	95.588	ENSACLG00000003395	srsf4	74	98.876	Astatotilapia_calliptera
ENSCSEG00000010058	srsf4	75	86.066	ENSAMXG00000034811	srsf4	75	92.105	Astyanax_mexicanus
ENSCSEG00000010058	srsf4	75	54.861	WBGene00004698	rsp-1	97	56.250	Caenorhabditis_elegans
ENSCSEG00000010058	srsf4	75	59.542	ENSCING00000011362	-	65	57.527	Ciona_intestinalis
ENSCSEG00000010058	srsf4	74	50.725	ENSCING00000024718	-	56	56.995	Ciona_intestinalis
ENSCSEG00000010058	srsf4	75	58.394	ENSCING00000020631	-	80	63.077	Ciona_intestinalis
ENSCSEG00000010058	srsf4	75	58.042	ENSCING00000012370	-	68	59.799	Ciona_intestinalis
ENSCSEG00000010058	srsf4	75	65.854	ENSCSAVG00000002581	-	89	49.242	Ciona_savignyi
ENSCSEG00000010058	srsf4	85	53.585	ENSCVAG00000004342	srsf4	79	54.406	Cyprinodon_variegatus
ENSCSEG00000010058	srsf4	75	80.645	ENSDARG00000105293	srsf4	72	92.105	Danio_rerio
ENSCSEG00000010058	srsf4	75	61.240	FBgn0004587	B52	95	61.719	Drosophila_melanogaster
ENSCSEG00000010058	srsf4	75	58.871	ENSEBUG00000001681	srsf4	67	59.239	Eptatretus_burgeri
ENSCSEG00000010058	srsf4	55	61.364	ENSEBUG00000003129	srsf4	69	56.707	Eptatretus_burgeri
ENSCSEG00000010058	srsf4	75	79.845	ENSELUG00000017551	srsf4	93	83.846	Esox_lucius
ENSCSEG00000010058	srsf4	98	95.588	ENSFHEG00000007472	srsf4	88	98.780	Fundulus_heteroclitus
ENSCSEG00000010058	srsf4	75	87.603	ENSGMOG00000012906	srsf4	54	92.647	Gadus_morhua
ENSCSEG00000010058	srsf4	75	93.443	ENSGAFG00000018496	srsf4	66	94.203	Gambusia_affinis
ENSCSEG00000010058	srsf4	75	75.397	ENSHBUG00000011326	-	51	75.676	Haplochromis_burtoni
ENSCSEG00000010058	srsf4	82	94.118	ENSHCOG00000012540	srsf4	68	91.444	Hippocampus_comes
ENSCSEG00000010058	srsf4	76	89.516	ENSKMAG00000013631	srsf4	82	76.279	Kryptolebias_marmoratus
ENSCSEG00000010058	srsf4	75	73.228	ENSLOCG00000001442	-	67	50.996	Lepisosteus_oculatus
ENSCSEG00000010058	srsf4	83	95.588	ENSMAMG00000004888	srsf4	86	79.487	Mastacembelus_armatus
ENSCSEG00000010058	srsf4	79	95.588	ENSMZEG00005026275	srsf4	74	98.876	Maylandia_zebra
ENSCSEG00000010058	srsf4	75	82.927	ENSMOCG00000013319	Srsf4	56	65.957	Microtus_ochrogaster
ENSCSEG00000010058	srsf4	79	95.588	ENSMMOG00000013653	srsf4	82	73.667	Mola_mola
ENSCSEG00000010058	srsf4	75	82.927	ENSMODG00000011052	SRSF4	56	81.283	Monodelphis_domestica
ENSCSEG00000010058	srsf4	50	73.750	ENSMALG00000010062	-	81	76.000	Monopterus_albus
ENSCSEG00000010058	srsf4	75	91.736	ENSMALG00000013392	srsf4	65	94.203	Monopterus_albus
ENSCSEG00000010058	srsf4	75	65.323	ENSNLEG00000030787	-	62	65.946	Nomascus_leucogenys
ENSCSEG00000010058	srsf4	75	89.344	ENSONIG00000013730	srsf4	65	94.203	Oreochromis_niloticus
ENSCSEG00000010058	srsf4	52	96.386	ENSORLG00000028783	-	75	100.000	Oryzias_latipes
ENSCSEG00000010058	srsf4	75	90.083	ENSORLG00020016052	srsf4	66	90.374	Oryzias_latipes_hni
ENSCSEG00000010058	srsf4	85	95.588	ENSORLG00015007566	srsf4	68	94.203	Oryzias_latipes_hsok
ENSCSEG00000010058	srsf4	79	95.588	ENSOMEG00000005541	srsf4	63	95.588	Oryzias_melastigma
ENSCSEG00000010058	srsf4	86	53.623	ENSOARG00000017944	-	60	36.025	Ovis_aries
ENSCSEG00000010058	srsf4	78	90.840	ENSPMGG00000013436	srsf4	98	90.840	Periophthalmus_magnuspinnatus
ENSCSEG00000010058	srsf4	75	93.443	ENSPFOG00000001306	srsf4	67	94.203	Poecilia_formosa
ENSCSEG00000010058	srsf4	81	95.588	ENSPLAG00000008812	srsf4	64	95.588	Poecilia_latipinna
ENSCSEG00000010058	srsf4	78	98.507	ENSPMEG00000023638	srsf4	63	94.203	Poecilia_mexicana
ENSCSEG00000010058	srsf4	81	95.588	ENSPREG00000009639	srsf4	67	92.754	Poecilia_reticulata
ENSCSEG00000010058	srsf4	68	95.588	ENSPNYG00000003796	srsf4	56	94.118	Pundamilia_nyererei
ENSCSEG00000010058	srsf4	72	91.176	ENSPNAG00000023844	srsf4	54	85.561	Pygocentrus_nattereri
ENSCSEG00000010058	srsf4	56	75.556	ENSSHAG00000012407	SRSF4	51	77.564	Sarcophilus_harrisii
ENSCSEG00000010058	srsf4	75	88.430	ENSSFOG00015020292	srsf4	96	73.529	Scleropages_formosus
ENSCSEG00000010058	srsf4	83	95.588	ENSSMAG00000001707	srsf4	66	95.588	Scophthalmus_maximus
ENSCSEG00000010058	srsf4	75	95.041	ENSSDUG00000007387	srsf4	84	75.796	Seriola_dumerili
ENSCSEG00000010058	srsf4	75	70.492	ENSSLDG00000009745	srsf4	62	72.872	Seriola_lalandi_dorsalis
ENSCSEG00000010058	srsf4	52	79.518	ENSSPUG00000019124	-	85	85.526	Sphenodon_punctatus
ENSCSEG00000010058	srsf4	85	95.588	ENSSPAG00000014538	srsf4	84	90.164	Stegastes_partitus
ENSCSEG00000010058	srsf4	85	94.118	ENSTRUG00000011891	srsf4	69	92.754	Takifugu_rubripes
ENSCSEG00000010058	srsf4	75	92.562	ENSTNIG00000000115	-	77	92.754	Tetraodon_nigroviridis
ENSCSEG00000010058	srsf4	75	92.562	ENSTNIG00000005573	srsf4	66	92.754	Tetraodon_nigroviridis
ENSCSEG00000010058	srsf4	75	68.939	ENSXCOG00000003212	-	55	72.340	Xiphophorus_couchianus
ENSCSEG00000010058	srsf4	75	90.400	ENSXCOG00000018826	srsf4	89	85.246	Xiphophorus_couchianus
ENSCSEG00000010058	srsf4	51	95.122	ENSXMAG00000021549	-	69	98.780	Xiphophorus_maculatus