EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000010570 (Gene tree)
Gene ID: 103398031
Gene Symbol: lsm1 (1 of many)
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2733 bases
Position: chrZ:14685709-14688441
Accession: 103398031
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000016448	LSM	PF01423.22	4.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000016656	-	1666	XM_008336518	ENSCSEP00000016448	145 (aa)	XP_008334740	-

Gene Model

Click here to download ENSCSEG00000010570's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000010570's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000010570	lsm1	100	97.241	ENSCSEG00000008319	lsm1	100	97.241

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000010570	lsm1	92	83.459	ENSG00000175324	LSM1	100	83.459	Homo_sapiens
ENSCSEG00000010570	lsm1	92	97.744	ENSAPOG00000010833	lsm1	100	97.744	Acanthochromis_polyacanthus
ENSCSEG00000010570	lsm1	92	83.459	ENSAMEG00000011141	LSM1	100	83.459	Ailuropoda_melanoleuca
ENSCSEG00000010570	lsm1	53	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSCSEG00000010570	lsm1	92	97.744	ENSAOCG00000017997	-	100	97.744	Amphiprion_ocellaris
ENSCSEG00000010570	lsm1	92	97.744	ENSAOCG00000017096	lsm1	100	97.744	Amphiprion_ocellaris
ENSCSEG00000010570	lsm1	92	97.744	ENSAPEG00000011669	lsm1	100	97.744	Amphiprion_percula
ENSCSEG00000010570	lsm1	92	99.248	ENSATEG00000022266	lsm1	100	99.248	Anabas_testudineus
ENSCSEG00000010570	lsm1	92	83.459	ENSANAG00000027785	LSM1	100	83.459	Aotus_nancymaae
ENSCSEG00000010570	lsm1	92	98.496	ENSACLG00000011400	lsm1	100	98.496	Astatotilapia_calliptera
ENSCSEG00000010570	lsm1	92	82.707	ENSAMXG00000005441	lsm1	100	82.707	Astyanax_mexicanus
ENSCSEG00000010570	lsm1	92	82.707	ENSBTAG00000001612	LSM1	100	82.707	Bos_taurus
ENSCSEG00000010570	lsm1	80	50.000	WBGene00003076	lsm-1	90	50.000	Caenorhabditis_elegans
ENSCSEG00000010570	lsm1	92	82.707	ENSCJAG00000048015	LSM1	100	82.707	Callithrix_jacchus
ENSCSEG00000010570	lsm1	92	83.459	ENSCAFG00000006113	LSM1	100	83.459	Canis_familiaris
ENSCSEG00000010570	lsm1	92	83.459	ENSCAFG00020001822	LSM1	100	83.459	Canis_lupus_dingo
ENSCSEG00000010570	lsm1	92	83.459	ENSCHIG00000013194	LSM1	100	83.459	Capra_hircus
ENSCSEG00000010570	lsm1	92	83.459	ENSTSYG00000010394	LSM1	100	83.459	Carlito_syrichta
ENSCSEG00000010570	lsm1	92	83.459	ENSCPOG00000032671	LSM1	100	83.459	Cavia_porcellus
ENSCSEG00000010570	lsm1	92	83.459	ENSCCAG00000037171	LSM1	100	83.459	Cebus_capucinus
ENSCSEG00000010570	lsm1	92	83.459	ENSCATG00000020377	LSM1	100	83.459	Cercocebus_atys
ENSCSEG00000010570	lsm1	92	81.955	ENSCLAG00000001137	LSM1	100	81.955	Chinchilla_lanigera
ENSCSEG00000010570	lsm1	92	83.459	ENSCSAG00000015485	LSM1	100	83.459	Chlorocebus_sabaeus
ENSCSEG00000010570	lsm1	92	84.211	ENSCHOG00000006030	LSM1	100	84.211	Choloepus_hoffmanni
ENSCSEG00000010570	lsm1	88	78.740	ENSCPBG00000006569	LSM1	86	78.740	Chrysemys_picta_bellii
ENSCSEG00000010570	lsm1	90	62.879	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSCSEG00000010570	lsm1	92	83.459	ENSCANG00000019173	LSM1	100	83.459	Colobus_angolensis_palliatus
ENSCSEG00000010570	lsm1	73	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSCSEG00000010570	lsm1	92	82.707	ENSCGRG00001024560	-	100	82.707	Cricetulus_griseus_chok1gshd
ENSCSEG00000010570	lsm1	92	82.707	ENSCGRG00000006554	-	100	82.707	Cricetulus_griseus_crigri
ENSCSEG00000010570	lsm1	73	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSCSEG00000010570	lsm1	92	97.744	ENSCVAG00000003871	lsm1	100	97.744	Cyprinodon_variegatus
ENSCSEG00000010570	lsm1	92	81.955	ENSDARG00000043177	lsm1	100	81.955	Danio_rerio
ENSCSEG00000010570	lsm1	92	82.707	ENSDNOG00000032911	-	100	82.707	Dasypus_novemcinctus
ENSCSEG00000010570	lsm1	82	65.546	ENSDNOG00000046620	-	100	65.546	Dasypus_novemcinctus
ENSCSEG00000010570	lsm1	92	83.459	ENSDNOG00000046387	-	100	83.459	Dasypus_novemcinctus
ENSCSEG00000010570	lsm1	91	78.788	ENSDNOG00000030989	-	99	78.788	Dasypus_novemcinctus
ENSCSEG00000010570	lsm1	92	83.459	ENSDORG00000028172	Lsm1	100	83.459	Dipodomys_ordii
ENSCSEG00000010570	lsm1	86	59.677	FBgn0261067	LSm1	91	59.677	Drosophila_melanogaster
ENSCSEG00000010570	lsm1	92	82.707	ENSEASG00005016677	LSM1	100	82.707	Equus_asinus_asinus
ENSCSEG00000010570	lsm1	92	82.707	ENSECAG00000010461	LSM1	100	82.707	Equus_caballus
ENSCSEG00000010570	lsm1	53	92.208	ENSEEUG00000015181	LSM1	78	92.208	Erinaceus_europaeus
ENSCSEG00000010570	lsm1	92	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSCSEG00000010570	lsm1	92	93.985	ENSELUG00000002322	lsm1	100	93.985	Esox_lucius
ENSCSEG00000010570	lsm1	92	83.459	ENSFCAG00000039335	LSM1	100	83.459	Felis_catus
ENSCSEG00000010570	lsm1	81	83.898	ENSFALG00000006723	LSM1	100	83.898	Ficedula_albicollis
ENSCSEG00000010570	lsm1	92	83.459	ENSFDAG00000007658	LSM1	100	83.459	Fukomys_damarensis
ENSCSEG00000010570	lsm1	92	97.744	ENSFHEG00000009556	lsm1	100	97.744	Fundulus_heteroclitus
ENSCSEG00000010570	lsm1	94	95.588	ENSGMOG00000016651	lsm1	100	95.588	Gadus_morhua
ENSCSEG00000010570	lsm1	92	83.459	ENSGALG00000003245	LSM1	100	83.459	Gallus_gallus
ENSCSEG00000010570	lsm1	92	97.744	ENSGAFG00000011355	lsm1	100	97.744	Gambusia_affinis
ENSCSEG00000010570	lsm1	94	96.324	ENSGACG00000011763	lsm1	100	96.324	Gasterosteus_aculeatus
ENSCSEG00000010570	lsm1	92	84.962	ENSGAGG00000024065	LSM1	100	84.962	Gopherus_agassizii
ENSCSEG00000010570	lsm1	92	83.459	ENSGGOG00000022658	LSM1	100	83.459	Gorilla_gorilla
ENSCSEG00000010570	lsm1	92	98.496	ENSHBUG00000010897	lsm1	100	98.496	Haplochromis_burtoni
ENSCSEG00000010570	lsm1	92	83.459	ENSHGLG00000005711	LSM1	100	83.459	Heterocephalus_glaber_female
ENSCSEG00000010570	lsm1	92	68.421	ENSHGLG00000017574	-	100	68.421	Heterocephalus_glaber_female
ENSCSEG00000010570	lsm1	92	68.421	ENSHGLG00100012152	-	100	68.421	Heterocephalus_glaber_male
ENSCSEG00000010570	lsm1	92	83.459	ENSHGLG00100017660	LSM1	100	83.459	Heterocephalus_glaber_male
ENSCSEG00000010570	lsm1	92	96.992	ENSHCOG00000017233	lsm1	100	96.992	Hippocampus_comes
ENSCSEG00000010570	lsm1	92	81.955	ENSIPUG00000002312	LSM1	100	81.955	Ictalurus_punctatus
ENSCSEG00000010570	lsm1	57	87.952	ENSSTOG00000026870	LSM1	100	87.952	Ictidomys_tridecemlineatus
ENSCSEG00000010570	lsm1	92	82.707	ENSJJAG00000014605	-	100	82.707	Jaculus_jaculus
ENSCSEG00000010570	lsm1	92	99.248	ENSKMAG00000003016	lsm1	100	99.248	Kryptolebias_marmoratus
ENSCSEG00000010570	lsm1	92	98.496	ENSLBEG00000022352	lsm1	100	98.496	Labrus_bergylta
ENSCSEG00000010570	lsm1	83	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSCSEG00000010570	lsm1	92	85.714	ENSLOCG00000015149	lsm1	100	85.714	Lepisosteus_oculatus
ENSCSEG00000010570	lsm1	92	83.459	ENSLAFG00000003534	LSM1	100	83.459	Loxodonta_africana
ENSCSEG00000010570	lsm1	92	83.459	ENSMFAG00000032661	LSM1	100	83.459	Macaca_fascicularis
ENSCSEG00000010570	lsm1	92	83.459	ENSMLEG00000034535	LSM1	100	83.459	Mandrillus_leucophaeus
ENSCSEG00000010570	lsm1	92	98.496	ENSMAMG00000007464	lsm1	100	98.496	Mastacembelus_armatus
ENSCSEG00000010570	lsm1	92	98.496	ENSMZEG00005010321	lsm1	100	98.496	Maylandia_zebra
ENSCSEG00000010570	lsm1	92	83.459	ENSMGAG00000002125	LSM1	100	83.459	Meleagris_gallopavo
ENSCSEG00000010570	lsm1	92	83.459	ENSMICG00000030726	LSM1	100	83.459	Microcebus_murinus
ENSCSEG00000010570	lsm1	92	82.707	ENSMOCG00000022817	Lsm1	100	82.707	Microtus_ochrogaster
ENSCSEG00000010570	lsm1	92	97.744	ENSMMOG00000015466	lsm1	100	97.744	Mola_mola
ENSCSEG00000010570	lsm1	92	84.211	ENSMODG00000010732	-	100	84.211	Monodelphis_domestica
ENSCSEG00000010570	lsm1	53	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSCSEG00000010570	lsm1	92	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSCSEG00000010570	lsm1	92	83.459	ENSMUSG00000037296	Lsm1	100	83.459	Mus_musculus
ENSCSEG00000010570	lsm1	92	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSCSEG00000010570	lsm1	92	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSCSEG00000010570	lsm1	92	84.211	ENSMPUG00000009883	LSM1	100	84.211	Mustela_putorius_furo
ENSCSEG00000010570	lsm1	92	83.459	ENSMLUG00000003734	LSM1	100	83.459	Myotis_lucifugus
ENSCSEG00000010570	lsm1	92	82.707	ENSNGAG00000003753	Lsm1	100	82.707	Nannospalax_galili
ENSCSEG00000010570	lsm1	53	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSCSEG00000010570	lsm1	92	83.459	ENSNLEG00000029390	LSM1	100	83.459	Nomascus_leucogenys
ENSCSEG00000010570	lsm1	92	84.211	ENSMEUG00000014077	LSM1	100	84.211	Notamacropus_eugenii
ENSCSEG00000010570	lsm1	81	79.487	ENSOPRG00000000333	LSM1	100	79.487	Ochotona_princeps
ENSCSEG00000010570	lsm1	92	83.459	ENSODEG00000004834	LSM1	100	83.459	Octodon_degus
ENSCSEG00000010570	lsm1	92	98.496	ENSONIG00000010782	lsm1	100	98.496	Oreochromis_niloticus
ENSCSEG00000010570	lsm1	92	84.211	ENSOANG00000003256	LSM1	100	84.211	Ornithorhynchus_anatinus
ENSCSEG00000010570	lsm1	92	83.459	ENSOCUG00000015399	LSM1	100	83.459	Oryctolagus_cuniculus
ENSCSEG00000010570	lsm1	92	97.744	ENSORLG00000030288	lsm1	100	97.744	Oryzias_latipes
ENSCSEG00000010570	lsm1	92	97.744	ENSORLG00020003941	lsm1	100	97.744	Oryzias_latipes_hni
ENSCSEG00000010570	lsm1	92	96.241	ENSORLG00020006213	-	86	96.241	Oryzias_latipes_hni
ENSCSEG00000010570	lsm1	92	97.744	ENSORLG00015018350	lsm1	100	97.744	Oryzias_latipes_hsok
ENSCSEG00000010570	lsm1	92	99.248	ENSOMEG00000012454	lsm1	100	99.248	Oryzias_melastigma
ENSCSEG00000010570	lsm1	92	83.459	ENSOGAG00000015161	LSM1	100	83.459	Otolemur_garnettii
ENSCSEG00000010570	lsm1	92	83.459	ENSOARG00000001317	LSM1	100	83.459	Ovis_aries
ENSCSEG00000010570	lsm1	92	83.459	ENSPPAG00000032279	LSM1	100	83.459	Pan_paniscus
ENSCSEG00000010570	lsm1	92	83.459	ENSPPRG00000014172	-	100	83.459	Panthera_pardus
ENSCSEG00000010570	lsm1	92	83.459	ENSPTIG00000010289	LSM1	100	83.459	Panthera_tigris_altaica
ENSCSEG00000010570	lsm1	92	83.459	ENSPTRG00000020169	LSM1	100	83.459	Pan_troglodytes
ENSCSEG00000010570	lsm1	92	83.459	ENSPANG00000008814	LSM1	100	83.459	Papio_anubis
ENSCSEG00000010570	lsm1	92	79.699	ENSPKIG00000019409	LSM1	99	79.699	Paramormyrops_kingsleyae
ENSCSEG00000010570	lsm1	92	86.466	ENSPKIG00000001839	lsm1	100	86.466	Paramormyrops_kingsleyae
ENSCSEG00000010570	lsm1	90	79.231	ENSPSIG00000012563	LSM1	99	79.231	Pelodiscus_sinensis
ENSCSEG00000010570	lsm1	53	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSCSEG00000010570	lsm1	78	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSCSEG00000010570	lsm1	92	84.211	ENSPCIG00000008880	LSM1	100	84.211	Phascolarctos_cinereus
ENSCSEG00000010570	lsm1	92	97.744	ENSPFOG00000016029	lsm1	100	97.744	Poecilia_formosa
ENSCSEG00000010570	lsm1	92	97.744	ENSPLAG00000007879	lsm1	100	97.744	Poecilia_latipinna
ENSCSEG00000010570	lsm1	92	97.744	ENSPMEG00000023550	lsm1	100	97.744	Poecilia_mexicana
ENSCSEG00000010570	lsm1	92	97.744	ENSPREG00000009574	lsm1	100	97.744	Poecilia_reticulata
ENSCSEG00000010570	lsm1	92	83.459	ENSPPYG00000018521	LSM1	100	83.459	Pongo_abelii
ENSCSEG00000010570	lsm1	92	83.459	ENSPCOG00000020901	-	100	83.459	Propithecus_coquereli
ENSCSEG00000010570	lsm1	92	83.459	ENSPVAG00000006016	LSM1	100	83.459	Pteropus_vampyrus
ENSCSEG00000010570	lsm1	92	98.496	ENSPNYG00000018067	lsm1	100	98.496	Pundamilia_nyererei
ENSCSEG00000010570	lsm1	92	81.955	ENSPNAG00000013707	lsm1	100	81.955	Pygocentrus_nattereri
ENSCSEG00000010570	lsm1	92	81.955	ENSRNOG00000015375	Lsm1	100	81.955	Rattus_norvegicus
ENSCSEG00000010570	lsm1	92	83.459	ENSRBIG00000027449	LSM1	100	83.459	Rhinopithecus_bieti
ENSCSEG00000010570	lsm1	92	83.459	ENSRROG00000036074	LSM1	100	83.459	Rhinopithecus_roxellana
ENSCSEG00000010570	lsm1	74	42.105	YJL124C	LSM1	66	42.105	Saccharomyces_cerevisiae
ENSCSEG00000010570	lsm1	92	84.211	ENSSHAG00000017260	LSM1	100	84.211	Sarcophilus_harrisii
ENSCSEG00000010570	lsm1	92	85.714	ENSSFOG00015019528	lsm1	100	85.714	Scleropages_formosus
ENSCSEG00000010570	lsm1	92	99.248	ENSSMAG00000004930	lsm1	100	99.248	Scophthalmus_maximus
ENSCSEG00000010570	lsm1	92	99.248	ENSSDUG00000021823	lsm1	100	99.248	Seriola_dumerili
ENSCSEG00000010570	lsm1	92	99.248	ENSSLDG00000012154	lsm1	100	99.248	Seriola_lalandi_dorsalis
ENSCSEG00000010570	lsm1	92	84.962	ENSSPUG00000014878	LSM1	100	84.962	Sphenodon_punctatus
ENSCSEG00000010570	lsm1	92	98.496	ENSSPAG00000020548	lsm1	100	98.496	Stegastes_partitus
ENSCSEG00000010570	lsm1	92	83.459	ENSSSCG00000039058	LSM1	100	83.459	Sus_scrofa
ENSCSEG00000010570	lsm1	92	85.714	ENSTGUG00000004793	LSM1	100	85.714	Taeniopygia_guttata
ENSCSEG00000010570	lsm1	92	94.737	ENSTRUG00000025239	lsm1	100	94.737	Takifugu_rubripes
ENSCSEG00000010570	lsm1	92	92.481	ENSTNIG00000004055	lsm1	100	92.481	Tetraodon_nigroviridis
ENSCSEG00000010570	lsm1	81	81.197	ENSTBEG00000015884	LSM1	100	81.197	Tupaia_belangeri
ENSCSEG00000010570	lsm1	92	83.459	ENSTTRG00000004482	LSM1	100	83.459	Tursiops_truncatus
ENSCSEG00000010570	lsm1	92	83.459	ENSUAMG00000004103	LSM1	100	83.459	Ursus_americanus
ENSCSEG00000010570	lsm1	92	83.459	ENSUMAG00000009132	LSM1	100	83.459	Ursus_maritimus
ENSCSEG00000010570	lsm1	53	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSCSEG00000010570	lsm1	56	64.198	ENSVVUG00000014880	-	86	64.198	Vulpes_vulpes
ENSCSEG00000010570	lsm1	92	83.459	ENSVVUG00000020191	LSM1	100	83.459	Vulpes_vulpes
ENSCSEG00000010570	lsm1	92	79.562	ENSXETG00000009004	lsm1	100	79.562	Xenopus_tropicalis
ENSCSEG00000010570	lsm1	92	97.744	ENSXCOG00000015631	lsm1	100	97.744	Xiphophorus_couchianus
ENSCSEG00000010570	lsm1	92	97.744	ENSXMAG00000026637	lsm1	100	97.744	Xiphophorus_maculatus