EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000010785 (Gene tree)
Gene ID: 103392063
Gene Symbol: SMARCAL1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 13410 bases
Position: chr16:10287290-10300699
Accession: 103392063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000016771	ResIII	PF04851.15	2.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000016985	SMARCAL1-201	6622	XM_008328590	ENSCSEP00000016771	881 (aa)	XP_008326812	UPI0004978E6E

Gene Model

Click here to download ENSCSEG00000010785's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000010785's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000010785	SMARCAL1	99	51.190	ENSG00000138375	SMARCAL1	99	65.839	Homo_sapiens
ENSCSEG00000010785	SMARCAL1	99	74.190	ENSAPOG00000020156	SMARCAL1	97	74.190	Acanthochromis_polyacanthus
ENSCSEG00000010785	SMARCAL1	95	81.466	ENSACIG00000001500	smarcal1	97	81.466	Amphilophus_citrinellus
ENSCSEG00000010785	SMARCAL1	99	73.631	ENSAOCG00000014266	SMARCAL1	99	73.631	Amphiprion_ocellaris
ENSCSEG00000010785	SMARCAL1	99	73.855	ENSAPEG00000015861	SMARCAL1	97	73.855	Amphiprion_percula
ENSCSEG00000010785	SMARCAL1	99	74.637	ENSATEG00000020624	SMARCAL1	97	74.637	Anabas_testudineus
ENSCSEG00000010785	SMARCAL1	76	63.947	ENSAPLG00000009864	SMARCAL1	70	63.743	Anas_platyrhynchos
ENSCSEG00000010785	SMARCAL1	79	63.766	ENSACAG00000004612	SMARCAL1	71	63.766	Anolis_carolinensis
ENSCSEG00000010785	SMARCAL1	99	72.768	ENSACLG00000015990	SMARCAL1	98	72.768	Astatotilapia_calliptera
ENSCSEG00000010785	SMARCAL1	99	64.759	ENSAMXG00000003350	smarcal1	97	64.502	Astyanax_mexicanus
ENSCSEG00000010785	SMARCAL1	99	52.025	ENSCPBG00000013599	SMARCAL1	97	52.025	Chrysemys_picta_bellii
ENSCSEG00000010785	SMARCAL1	72	49.221	ENSCING00000009308	-	100	49.221	Ciona_intestinalis
ENSCSEG00000010785	SMARCAL1	100	68.521	ENSCVAG00000018780	SMARCAL1	98	68.973	Cyprinodon_variegatus
ENSCSEG00000010785	SMARCAL1	60	53.920	ENSEBUG00000011906	SMARCAL1	73	53.920	Eptatretus_burgeri
ENSCSEG00000010785	SMARCAL1	99	74.893	ENSELUG00000010440	-	95	71.258	Esox_lucius
ENSCSEG00000010785	SMARCAL1	98	51.170	ENSFALG00000003981	SMARCAL1	96	51.761	Ficedula_albicollis
ENSCSEG00000010785	SMARCAL1	99	69.560	ENSFHEG00000008380	SMARCAL1	97	69.335	Fundulus_heteroclitus
ENSCSEG00000010785	SMARCAL1	60	75.000	ENSGMOG00000010034	smarcal1	93	75.000	Gadus_morhua
ENSCSEG00000010785	SMARCAL1	99	52.179	ENSGALG00000011475	RPL37A	72	62.338	Gallus_gallus
ENSCSEG00000010785	SMARCAL1	90	79.478	ENSGACG00000006073	SMARCAL1	100	81.970	Gasterosteus_aculeatus
ENSCSEG00000010785	SMARCAL1	74	64.688	ENSGAGG00000015660	SMARCAL1	72	64.688	Gopherus_agassizii
ENSCSEG00000010785	SMARCAL1	99	72.768	ENSHBUG00000002973	smarcal1	98	72.545	Haplochromis_burtoni
ENSCSEG00000010785	SMARCAL1	98	70.023	ENSHCOG00000017921	smarcal1	97	70.058	Hippocampus_comes
ENSCSEG00000010785	SMARCAL1	99	70.193	ENSKMAG00000012023	SMARCAL1	99	69.040	Kryptolebias_marmoratus
ENSCSEG00000010785	SMARCAL1	93	72.992	ENSLBEG00000003493	smarcal1	100	72.875	Labrus_bergylta
ENSCSEG00000010785	SMARCAL1	96	79.972	ENSLBEG00000022915	smarcal1	100	79.972	Labrus_bergylta
ENSCSEG00000010785	SMARCAL1	98	51.554	ENSLACG00000010974	SMARCAL1	96	51.717	Latimeria_chalumnae
ENSCSEG00000010785	SMARCAL1	95	62.397	ENSLOCG00000009637	smarcal1	99	62.426	Lepisosteus_oculatus
ENSCSEG00000010785	SMARCAL1	99	74.803	ENSMAMG00000000828	SMARCAL1	99	74.580	Mastacembelus_armatus
ENSCSEG00000010785	SMARCAL1	99	72.656	ENSMZEG00005007660	SMARCAL1	98	72.656	Maylandia_zebra
ENSCSEG00000010785	SMARCAL1	99	53.653	ENSMGAG00000011658	SMARCAL1	96	53.846	Meleagris_gallopavo
ENSCSEG00000010785	SMARCAL1	98	72.477	ENSMMOG00000003842	smarcal1	98	72.477	Mola_mola
ENSCSEG00000010785	SMARCAL1	98	51.178	ENSMODG00000015544	SMARCAL1	72	60.576	Monodelphis_domestica
ENSCSEG00000010785	SMARCAL1	95	79.696	ENSNBRG00000016273	smarcal1	97	79.696	Neolamprologus_brichardi
ENSCSEG00000010785	SMARCAL1	75	63.651	ENSMEUG00000004395	SMARCAL1	73	63.281	Notamacropus_eugenii
ENSCSEG00000010785	SMARCAL1	99	72.910	ENSONIG00000009036	smarcal1	100	81.752	Oreochromis_niloticus
ENSCSEG00000010785	SMARCAL1	99	71.091	ENSORLG00000016455	SMARCAL1	97	71.091	Oryzias_latipes
ENSCSEG00000010785	SMARCAL1	99	70.932	ENSORLG00020001610	SMARCAL1	97	70.932	Oryzias_latipes_hni
ENSCSEG00000010785	SMARCAL1	99	71.236	ENSORLG00015001865	SMARCAL1	97	71.236	Oryzias_latipes_hsok
ENSCSEG00000010785	SMARCAL1	99	71.073	ENSOMEG00000001845	smarcal1	97	70.529	Oryzias_melastigma
ENSCSEG00000010785	SMARCAL1	99	67.785	ENSPMGG00000019092	SMARCAL1	97	68.588	Periophthalmus_magnuspinnatus
ENSCSEG00000010785	SMARCAL1	75	61.596	ENSPCIG00000022514	SMARCAL1	72	62.000	Phascolarctos_cinereus
ENSCSEG00000010785	SMARCAL1	100	70.000	ENSPFOG00000000560	SMARCAL1	98	70.838	Poecilia_formosa
ENSCSEG00000010785	SMARCAL1	100	70.000	ENSPMEG00000018146	SMARCAL1	98	70.838	Poecilia_mexicana
ENSCSEG00000010785	SMARCAL1	61	83.063	ENSPREG00000009591	SMARCAL1	86	83.063	Poecilia_reticulata
ENSCSEG00000010785	SMARCAL1	99	65.459	ENSPNAG00000014900	smarcal1	91	65.119	Pygocentrus_nattereri
ENSCSEG00000010785	SMARCAL1	99	50.221	ENSSHAG00000013538	SMARCAL1	97	48.802	Sarcophilus_harrisii
ENSCSEG00000010785	SMARCAL1	99	74.531	ENSSMAG00000010427	SMARCAL1	98	74.531	Scophthalmus_maximus
ENSCSEG00000010785	SMARCAL1	99	76.111	ENSSDUG00000017470	SMARCAL1	95	76.111	Seriola_dumerili
ENSCSEG00000010785	SMARCAL1	99	75.305	ENSSLDG00000007224	SMARCAL1	98	75.415	Seriola_lalandi_dorsalis
ENSCSEG00000010785	SMARCAL1	79	63.727	ENSSPUG00000015369	SMARCAL1	71	63.727	Sphenodon_punctatus
ENSCSEG00000010785	SMARCAL1	95	73.008	ENSSPAG00000003742	smarcal1	96	81.418	Stegastes_partitus
ENSCSEG00000010785	SMARCAL1	92	52.264	ENSSSCG00000035501	SMARCAL1	76	57.720	Sus_scrofa
ENSCSEG00000010785	SMARCAL1	77	61.243	ENSTGUG00000005079	SMARCAL1	99	61.243	Taeniopygia_guttata
ENSCSEG00000010785	SMARCAL1	99	62.247	ENSTRUG00000010701	SMARCAL1	99	61.685	Takifugu_rubripes
ENSCSEG00000010785	SMARCAL1	99	44.898	ENSTTRG00000009001	SMARCAL1	97	45.151	Tursiops_truncatus
ENSCSEG00000010785	SMARCAL1	99	56.739	ENSXETG00000000465	smarcal1	97	56.427	Xenopus_tropicalis