EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000010792 (Gene tree)
Gene ID: 103398042
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 6890 bases
Position: chrZ:14798421-14805310
Accession: 103398042
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000016802	PRP21_like_P	PF12230.8	6.1e-51	1	1
ENSCSEP00000016802	Surp	PF01805.20	7.6e-46	1	2
ENSCSEP00000016802	Surp	PF01805.20	7.6e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000017015	-	3531	XM_008336529	ENSCSEP00000016802	786 (aa)	XP_008334751	UPI0004961864

Gene Model

Click here to download ENSCSEG00000010792's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000010792's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000010792	sf3a1	98	83.615	ENSG00000099995	SF3A1	100	81.784	Homo_sapiens
ENSCSEG00000010792	sf3a1	100	92.640	ENSAPOG00000020465	sf3a1	100	92.640	Acanthochromis_polyacanthus
ENSCSEG00000010792	sf3a1	98	82.835	ENSAMEG00000007737	SF3A1	99	81.772	Ailuropoda_melanoleuca
ENSCSEG00000010792	sf3a1	100	90.990	ENSACIG00000020672	sf3a1	100	91.624	Amphilophus_citrinellus
ENSCSEG00000010792	sf3a1	100	92.386	ENSAOCG00000003060	sf3a1	100	92.386	Amphiprion_ocellaris
ENSCSEG00000010792	sf3a1	100	92.513	ENSAPEG00000010735	sf3a1	100	92.513	Amphiprion_percula
ENSCSEG00000010792	sf3a1	98	91.558	ENSATEG00000021201	sf3a1	97	92.078	Anabas_testudineus
ENSCSEG00000010792	sf3a1	96	82.872	ENSAPLG00000009057	SF3A1	99	83.181	Anas_platyrhynchos
ENSCSEG00000010792	sf3a1	100	79.877	ENSACAG00000009415	SF3A1	100	79.383	Anolis_carolinensis
ENSCSEG00000010792	sf3a1	98	82.965	ENSANAG00000032045	SF3A1	100	81.658	Aotus_nancymaae
ENSCSEG00000010792	sf3a1	100	90.216	ENSACLG00000012622	sf3a1	100	91.105	Astatotilapia_calliptera
ENSCSEG00000010792	sf3a1	99	87.802	ENSAMXG00000005382	sf3a1	99	88.183	Astyanax_mexicanus
ENSCSEG00000010792	sf3a1	99	82.179	ENSBTAG00000003390	SF3A1	99	82.107	Bos_taurus
ENSCSEG00000010792	sf3a1	84	45.009	WBGene00004188	prp-21	90	43.750	Caenorhabditis_elegans
ENSCSEG00000010792	sf3a1	98	83.095	ENSCJAG00000010370	SF3A1	100	81.658	Callithrix_jacchus
ENSCSEG00000010792	sf3a1	99	81.795	ENSCAFG00000012559	SF3A1	99	81.726	Canis_familiaris
ENSCSEG00000010792	sf3a1	99	81.795	ENSCAFG00020000838	SF3A1	99	81.726	Canis_lupus_dingo
ENSCSEG00000010792	sf3a1	99	82.308	ENSCHIG00000018642	SF3A1	99	82.234	Capra_hircus
ENSCSEG00000010792	sf3a1	98	82.965	ENSTSYG00000004739	SF3A1	99	81.853	Carlito_syrichta
ENSCSEG00000010792	sf3a1	95	67.246	ENSCAPG00000015414	SF3A1	97	67.517	Cavia_aperea
ENSCSEG00000010792	sf3a1	99	82.458	ENSCPOG00000014589	SF3A1	99	82.107	Cavia_porcellus
ENSCSEG00000010792	sf3a1	98	82.965	ENSCCAG00000032006	SF3A1	100	81.658	Cebus_capucinus
ENSCSEG00000010792	sf3a1	99	82.179	ENSCATG00000029241	SF3A1	100	81.784	Cercocebus_atys
ENSCSEG00000010792	sf3a1	99	83.012	ENSCLAG00000006508	SF3A1	99	81.980	Chinchilla_lanigera
ENSCSEG00000010792	sf3a1	99	82.179	ENSCSAG00000009470	SF3A1	100	81.784	Chlorocebus_sabaeus
ENSCSEG00000010792	sf3a1	58	87.547	ENSCHOG00000005201	SF3A1	65	87.500	Choloepus_hoffmanni
ENSCSEG00000010792	sf3a1	100	81.566	ENSCPBG00000007595	SF3A1	100	81.566	Chrysemys_picta_bellii
ENSCSEG00000010792	sf3a1	97	52.246	ENSCING00000008526	-	97	51.781	Ciona_intestinalis
ENSCSEG00000010792	sf3a1	97	50.900	ENSCSAVG00000005608	-	100	50.385	Ciona_savignyi
ENSCSEG00000010792	sf3a1	99	82.179	ENSCANG00000033564	SF3A1	100	81.784	Colobus_angolensis_palliatus
ENSCSEG00000010792	sf3a1	97	83.574	ENSCGRG00001008933	Sf3a1	100	81.533	Cricetulus_griseus_chok1gshd
ENSCSEG00000010792	sf3a1	97	83.574	ENSCGRG00000006127	Sf3a1	100	81.533	Cricetulus_griseus_crigri
ENSCSEG00000010792	sf3a1	100	88.959	ENSCVAG00000004560	sf3a1	100	88.959	Cyprinodon_variegatus
ENSCSEG00000010792	sf3a1	100	86.058	ENSDARG00000041887	sf3a1	100	88.636	Danio_rerio
ENSCSEG00000010792	sf3a1	98	83.485	ENSDNOG00000010629	SF3A1	99	82.614	Dasypus_novemcinctus
ENSCSEG00000010792	sf3a1	99	82.308	ENSDORG00000005613	Sf3a1	100	81.533	Dipodomys_ordii
ENSCSEG00000010792	sf3a1	80	61.132	FBgn0266917	Sf3a1	82	60.000	Drosophila_melanogaster
ENSCSEG00000010792	sf3a1	85	81.913	ENSETEG00000017194	SF3A1	95	82.810	Echinops_telfairi
ENSCSEG00000010792	sf3a1	97	67.673	ENSEBUG00000001285	sf3a1	95	69.182	Eptatretus_burgeri
ENSCSEG00000010792	sf3a1	99	82.398	ENSEASG00005010254	SF3A1	100	82.035	Equus_asinus_asinus
ENSCSEG00000010792	sf3a1	99	82.398	ENSECAG00000023962	SF3A1	100	82.035	Equus_caballus
ENSCSEG00000010792	sf3a1	74	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSCSEG00000010792	sf3a1	100	85.335	ENSELUG00000022578	sf3a1	100	85.588	Esox_lucius
ENSCSEG00000010792	sf3a1	99	81.923	ENSFCAG00000011932	SF3A1	99	81.853	Felis_catus
ENSCSEG00000010792	sf3a1	96	82.431	ENSFALG00000006944	SF3A1	100	80.958	Ficedula_albicollis
ENSCSEG00000010792	sf3a1	98	83.095	ENSFDAG00000009560	SF3A1	99	81.980	Fukomys_damarensis
ENSCSEG00000010792	sf3a1	100	89.975	ENSFHEG00000010866	sf3a1	100	90.228	Fundulus_heteroclitus
ENSCSEG00000010792	sf3a1	100	86.387	ENSGMOG00000016024	sf3a1	100	86.404	Gadus_morhua
ENSCSEG00000010792	sf3a1	96	83.509	ENSGALG00000007937	SF3A1	100	81.360	Gallus_gallus
ENSCSEG00000010792	sf3a1	100	89.721	ENSGAFG00000009111	sf3a1	100	89.721	Gambusia_affinis
ENSCSEG00000010792	sf3a1	100	88.131	ENSGACG00000011893	sf3a1	100	87.626	Gasterosteus_aculeatus
ENSCSEG00000010792	sf3a1	96	80.526	ENSGAGG00000000762	SF3A1	99	81.159	Gopherus_agassizii
ENSCSEG00000010792	sf3a1	98	83.615	ENSGGOG00000012631	SF3A1	100	81.784	Gorilla_gorilla
ENSCSEG00000010792	sf3a1	100	90.978	ENSHBUG00000015795	sf3a1	100	91.105	Haplochromis_burtoni
ENSCSEG00000010792	sf3a1	99	82.074	ENSHGLG00000007907	SF3A1	99	82.107	Heterocephalus_glaber_female
ENSCSEG00000010792	sf3a1	99	82.074	ENSHGLG00100013799	SF3A1	99	82.107	Heterocephalus_glaber_male
ENSCSEG00000010792	sf3a1	100	88.945	ENSHCOG00000015423	sf3a1	100	87.548	Hippocampus_comes
ENSCSEG00000010792	sf3a1	97	85.436	ENSIPUG00000002470	sf3a1	98	86.086	Ictalurus_punctatus
ENSCSEG00000010792	sf3a1	97	83.420	ENSSTOG00000013892	SF3A1	100	82.035	Ictidomys_tridecemlineatus
ENSCSEG00000010792	sf3a1	98	83.225	ENSJJAG00000022566	Sf3a1	100	81.556	Jaculus_jaculus
ENSCSEG00000010792	sf3a1	100	90.102	ENSKMAG00000002400	sf3a1	100	90.228	Kryptolebias_marmoratus
ENSCSEG00000010792	sf3a1	100	89.708	ENSLBEG00000022974	sf3a1	100	89.327	Labrus_bergylta
ENSCSEG00000010792	sf3a1	100	82.532	ENSLACG00000003565	SF3A1	100	83.291	Latimeria_chalumnae
ENSCSEG00000010792	sf3a1	100	86.490	ENSLOCG00000008251	sf3a1	99	86.742	Lepisosteus_oculatus
ENSCSEG00000010792	sf3a1	99	55.032	ENSLAFG00000026032	-	97	55.341	Loxodonta_africana
ENSCSEG00000010792	sf3a1	99	82.179	ENSLAFG00000000448	SF3A1	100	81.784	Loxodonta_africana
ENSCSEG00000010792	sf3a1	99	82.051	ENSMFAG00000031979	SF3A1	100	81.658	Macaca_fascicularis
ENSCSEG00000010792	sf3a1	99	82.051	ENSMMUG00000005547	SF3A1	100	81.658	Macaca_mulatta
ENSCSEG00000010792	sf3a1	99	82.179	ENSMNEG00000037229	SF3A1	100	81.784	Macaca_nemestrina
ENSCSEG00000010792	sf3a1	99	82.179	ENSMLEG00000041908	SF3A1	100	81.784	Mandrillus_leucophaeus
ENSCSEG00000010792	sf3a1	98	90.686	ENSMAMG00000006460	sf3a1	96	91.332	Mastacembelus_armatus
ENSCSEG00000010792	sf3a1	100	90.216	ENSMZEG00005009633	sf3a1	100	91.105	Maylandia_zebra
ENSCSEG00000010792	sf3a1	96	83.509	ENSMGAG00000001330	SF3A1	99	83.159	Meleagris_gallopavo
ENSCSEG00000010792	sf3a1	93	79.456	ENSMAUG00000020317	Sf3a1	94	79.728	Mesocricetus_auratus
ENSCSEG00000010792	sf3a1	99	81.923	ENSMICG00000010038	SF3A1	100	81.533	Microcebus_murinus
ENSCSEG00000010792	sf3a1	98	83.095	ENSMOCG00000008438	Sf3a1	100	81.658	Microtus_ochrogaster
ENSCSEG00000010792	sf3a1	100	88.056	ENSMMOG00000015588	sf3a1	99	88.183	Mola_mola
ENSCSEG00000010792	sf3a1	98	81.664	ENSMODG00000009270	SF3A1	100	81.635	Monodelphis_domestica
ENSCSEG00000010792	sf3a1	100	90.621	ENSMALG00000000148	sf3a1	100	91.128	Monopterus_albus
ENSCSEG00000010792	sf3a1	98	83.117	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.084	Mus_caroli
ENSCSEG00000010792	sf3a1	98	83.117	ENSMUSG00000002129	Sf3a1	99	82.084	Mus_musculus
ENSCSEG00000010792	sf3a1	98	82.987	MGP_PahariEiJ_G0016862	Sf3a1	99	81.957	Mus_pahari
ENSCSEG00000010792	sf3a1	98	83.117	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.084	Mus_spretus
ENSCSEG00000010792	sf3a1	99	81.667	ENSMPUG00000013144	SF3A1	100	81.533	Mustela_putorius_furo
ENSCSEG00000010792	sf3a1	99	82.179	ENSMLUG00000002139	SF3A1	100	81.784	Myotis_lucifugus
ENSCSEG00000010792	sf3a1	99	82.908	ENSNGAG00000016977	Sf3a1	98	82.781	Nannospalax_galili
ENSCSEG00000010792	sf3a1	100	90.355	ENSNBRG00000016642	sf3a1	100	90.380	Neolamprologus_brichardi
ENSCSEG00000010792	sf3a1	99	82.179	ENSNLEG00000003686	SF3A1	100	81.784	Nomascus_leucogenys
ENSCSEG00000010792	sf3a1	93	74.185	ENSMEUG00000008741	SF3A1	100	73.753	Notamacropus_eugenii
ENSCSEG00000010792	sf3a1	98	83.139	ENSOPRG00000016636	SF3A1	99	82.234	Ochotona_princeps
ENSCSEG00000010792	sf3a1	98	83.095	ENSODEG00000002571	SF3A1	100	81.761	Octodon_degus
ENSCSEG00000010792	sf3a1	100	91.105	ENSONIG00000010848	sf3a1	100	91.360	Oreochromis_niloticus
ENSCSEG00000010792	sf3a1	98	82.750	ENSOCUG00000007633	SF3A1	99	81.853	Oryctolagus_cuniculus
ENSCSEG00000010792	sf3a1	96	89.390	ENSORLG00000013050	sf3a1	99	90.186	Oryzias_latipes
ENSCSEG00000010792	sf3a1	96	90.318	ENSORLG00020003236	sf3a1	95	90.053	Oryzias_latipes_hni
ENSCSEG00000010792	sf3a1	100	88.945	ENSORLG00015017411	sf3a1	100	89.581	Oryzias_latipes_hsok
ENSCSEG00000010792	sf3a1	100	90.343	ENSOMEG00000013362	sf3a1	100	90.343	Oryzias_melastigma
ENSCSEG00000010792	sf3a1	98	82.965	ENSOGAG00000012931	SF3A1	99	81.853	Otolemur_garnettii
ENSCSEG00000010792	sf3a1	99	82.028	ENSOARG00000006849	SF3A1	99	81.576	Ovis_aries
ENSCSEG00000010792	sf3a1	98	82.965	ENSPPAG00000041790	SF3A1	100	80.750	Pan_paniscus
ENSCSEG00000010792	sf3a1	99	81.923	ENSPPRG00000004391	SF3A1	99	81.853	Panthera_pardus
ENSCSEG00000010792	sf3a1	98	82.835	ENSPTIG00000000844	SF3A1	99	82.687	Panthera_tigris_altaica
ENSCSEG00000010792	sf3a1	98	83.615	ENSPTRG00000014240	SF3A1	100	81.784	Pan_troglodytes
ENSCSEG00000010792	sf3a1	99	82.179	ENSPANG00000020772	SF3A1	100	81.784	Papio_anubis
ENSCSEG00000010792	sf3a1	84	92.308	ENSPSIG00000012803	SF3A1	99	92.308	Pelodiscus_sinensis
ENSCSEG00000010792	sf3a1	97	89.921	ENSPMGG00000023096	sf3a1	100	90.183	Periophthalmus_magnuspinnatus
ENSCSEG00000010792	sf3a1	97	83.706	ENSPEMG00000009494	Sf3a1	100	81.658	Peromyscus_maniculatus_bairdii
ENSCSEG00000010792	sf3a1	69	76.417	ENSPMAG00000007139	-	95	75.000	Petromyzon_marinus
ENSCSEG00000010792	sf3a1	97	82.245	ENSPCIG00000022692	SF3A1	100	81.509	Phascolarctos_cinereus
ENSCSEG00000010792	sf3a1	100	80.657	ENSPFOG00000016768	sf3a1	100	80.278	Poecilia_formosa
ENSCSEG00000010792	sf3a1	100	90.355	ENSPLAG00000017268	sf3a1	100	90.355	Poecilia_latipinna
ENSCSEG00000010792	sf3a1	96	90.841	ENSPMEG00000019811	sf3a1	100	90.390	Poecilia_mexicana
ENSCSEG00000010792	sf3a1	100	90.102	ENSPREG00000010347	sf3a1	100	90.228	Poecilia_reticulata
ENSCSEG00000010792	sf3a1	99	82.179	ENSPPYG00000011707	SF3A1	100	81.784	Pongo_abelii
ENSCSEG00000010792	sf3a1	58	82.231	ENSPCAG00000003266	SF3A1	57	82.231	Procavia_capensis
ENSCSEG00000010792	sf3a1	99	81.923	ENSPCOG00000026630	SF3A1	100	81.533	Propithecus_coquereli
ENSCSEG00000010792	sf3a1	95	82.754	ENSPVAG00000017719	SF3A1	94	83.155	Pteropus_vampyrus
ENSCSEG00000010792	sf3a1	100	90.978	ENSPNYG00000018706	sf3a1	100	91.105	Pundamilia_nyererei
ENSCSEG00000010792	sf3a1	99	87.421	ENSPNAG00000003721	sf3a1	99	87.421	Pygocentrus_nattereri
ENSCSEG00000010792	sf3a1	98	82.558	ENSRNOG00000005218	Sf3a1	99	81.853	Rattus_norvegicus
ENSCSEG00000010792	sf3a1	99	82.179	ENSRBIG00000032167	SF3A1	100	81.784	Rhinopithecus_bieti
ENSCSEG00000010792	sf3a1	99	82.179	ENSRROG00000044908	SF3A1	100	81.784	Rhinopithecus_roxellana
ENSCSEG00000010792	sf3a1	93	83.152	ENSSBOG00000021960	SF3A1	100	82.647	Saimiri_boliviensis_boliviensis
ENSCSEG00000010792	sf3a1	98	79.064	ENSSHAG00000003666	SF3A1	97	80.884	Sarcophilus_harrisii
ENSCSEG00000010792	sf3a1	100	87.374	ENSSFOG00015004579	sf3a1	100	88.384	Scleropages_formosus
ENSCSEG00000010792	sf3a1	100	90.585	ENSSMAG00000004275	sf3a1	100	90.331	Scophthalmus_maximus
ENSCSEG00000010792	sf3a1	100	91.995	ENSSDUG00000022219	sf3a1	100	91.741	Seriola_dumerili
ENSCSEG00000010792	sf3a1	100	91.995	ENSSLDG00000012642	sf3a1	100	91.741	Seriola_lalandi_dorsalis
ENSCSEG00000010792	sf3a1	98	80.545	ENSSARG00000005960	SF3A1	99	80.233	Sorex_araneus
ENSCSEG00000010792	sf3a1	96	83.117	ENSSPUG00000018863	SF3A1	97	81.830	Sphenodon_punctatus
ENSCSEG00000010792	sf3a1	100	92.122	ENSSPAG00000011856	sf3a1	100	91.868	Stegastes_partitus
ENSCSEG00000010792	sf3a1	99	81.923	ENSSSCG00000010002	SF3A1	99	81.980	Sus_scrofa
ENSCSEG00000010792	sf3a1	96	82.895	ENSTGUG00000010547	SF3A1	99	83.203	Taeniopygia_guttata
ENSCSEG00000010792	sf3a1	100	89.454	ENSTRUG00000006118	sf3a1	100	88.056	Takifugu_rubripes
ENSCSEG00000010792	sf3a1	56	87.687	ENSTNIG00000005713	sf3a1	88	91.743	Tetraodon_nigroviridis
ENSCSEG00000010792	sf3a1	98	77.113	ENSTBEG00000012771	SF3A1	100	75.879	Tupaia_belangeri
ENSCSEG00000010792	sf3a1	99	81.562	ENSTTRG00000001535	SF3A1	99	81.622	Tursiops_truncatus
ENSCSEG00000010792	sf3a1	99	80.691	ENSUAMG00000006750	SF3A1	98	81.074	Ursus_americanus
ENSCSEG00000010792	sf3a1	99	82.134	ENSUMAG00000016665	SF3A1	99	82.519	Ursus_maritimus
ENSCSEG00000010792	sf3a1	99	81.795	ENSVVUG00000003075	SF3A1	99	81.726	Vulpes_vulpes
ENSCSEG00000010792	sf3a1	100	77.945	ENSXETG00000016144	sf3a1	96	83.806	Xenopus_tropicalis
ENSCSEG00000010792	sf3a1	100	89.340	ENSXCOG00000015653	sf3a1	100	89.467	Xiphophorus_couchianus
ENSCSEG00000010792	sf3a1	100	89.594	ENSXMAG00000002753	sf3a1	100	89.721	Xiphophorus_maculatus