EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000011160 (Gene tree)
Gene ID: -
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 1890 bases
Position: chr16:10746364-10748253
Accession: 103392142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000017388	MMR_HSR1	PF01926.23	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000017605	-	696	XM_008328687	ENSCSEP00000017388	231 (aa)	XP_008326909	-

Gene Model

Click here to download ENSCSEG00000011160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000011160's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000011160	rab20	83	31.527	ENSCSEG00000002970	RAB7A	74	31.527
ENSCSEG00000011160	rab20	90	31.019	ENSCSEG00000007383	rab11a	84	31.019
ENSCSEG00000011160	rab20	97	30.043	ENSCSEG00000013400	rab35b	96	30.043
ENSCSEG00000011160	rab20	86	33.990	ENSCSEG00000011982	rab25b	75	33.990
ENSCSEG00000011160	rab20	50	36.364	ENSCSEG00000018732	rab1ba	61	36.364
ENSCSEG00000011160	rab20	53	37.500	ENSCSEG00000019797	rab22a	66	37.500
ENSCSEG00000011160	rab20	80	30.688	ENSCSEG00000003122	rab6ba	74	30.688
ENSCSEG00000011160	rab20	50	36.364	ENSCSEG00000020977	-	59	36.364
ENSCSEG00000011160	rab20	50	33.600	ENSCSEG00000014479	-	50	33.600
ENSCSEG00000011160	rab20	80	31.746	ENSCSEG00000016498	rab14	71	31.746
ENSCSEG00000011160	rab20	50	34.400	ENSCSEG00000006243	zgc:101559	52	34.400
ENSCSEG00000011160	rab20	97	30.126	ENSCSEG00000011996	rab11al	93	30.126
ENSCSEG00000011160	rab20	50	39.669	ENSCSEG00000017024	rab5c	55	39.669
ENSCSEG00000011160	rab20	54	37.692	ENSCSEG00000007239	-	59	37.692
ENSCSEG00000011160	rab20	50	35.000	ENSCSEG00000014416	zgc:171927	56	35.000
ENSCSEG00000011160	rab20	86	30.097	ENSCSEG00000003768	rab15	72	30.097
ENSCSEG00000011160	rab20	83	31.527	ENSCSEG00000005357	-	80	31.527
ENSCSEG00000011160	rab20	98	32.189	ENSCSEG00000000205	RAB15	93	32.189
ENSCSEG00000011160	rab20	52	38.095	ENSCSEG00000012149	rab11bb	57	38.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000011160	rab20	100	77.432	ENSATEG00000011117	rab20	100	77.432	Anabas_testudineus
ENSCSEG00000011160	rab20	100	65.801	ENSAPLG00000011744	RAB20	99	65.801	Anas_platyrhynchos
ENSCSEG00000011160	rab20	99	64.103	ENSACAG00000014045	RAB20	99	64.103	Anolis_carolinensis
ENSCSEG00000011160	rab20	99	68.293	ENSAMXG00000003504	rab20	99	68.293	Astyanax_mexicanus
ENSCSEG00000011160	rab20	99	67.949	ENSCPBG00000005866	RAB20	99	67.949	Chrysemys_picta_bellii
ENSCSEG00000011160	rab20	99	77.311	ENSDARG00000005049	rab20	97	77.311	Danio_rerio
ENSCSEG00000011160	rab20	100	71.206	ENSELUG00000004092	rab20	98	71.206	Esox_lucius
ENSCSEG00000011160	rab20	100	66.234	ENSFALG00000004409	RAB20	99	66.234	Ficedula_albicollis
ENSCSEG00000011160	rab20	100	84.979	ENSGACG00000003527	rab20	99	84.979	Gasterosteus_aculeatus
ENSCSEG00000011160	rab20	100	75.889	ENSHCOG00000013468	rab20	98	75.889	Hippocampus_comes
ENSCSEG00000011160	rab20	100	73.640	ENSIPUG00000018288	RAB20	96	74.477	Ictalurus_punctatus
ENSCSEG00000011160	rab20	100	73.640	ENSIPUG00000000432	RAB20	96	74.477	Ictalurus_punctatus
ENSCSEG00000011160	rab20	99	66.094	ENSLACG00000011001	RAB20	99	66.094	Latimeria_chalumnae
ENSCSEG00000011160	rab20	100	80.469	ENSMAMG00000015214	rab20	98	80.469	Mastacembelus_armatus
ENSCSEG00000011160	rab20	100	81.857	ENSMMOG00000020022	rab20	99	81.857	Mola_mola
ENSCSEG00000011160	rab20	99	64.103	ENSMEUG00000009442	RAB20	99	64.103	Notamacropus_eugenii
ENSCSEG00000011160	rab20	86	51.659	ENSPMAG00000004439	rab20	98	51.905	Petromyzon_marinus
ENSCSEG00000011160	rab20	100	72.314	ENSPNAG00000008867	rab20	99	73.554	Pygocentrus_nattereri
ENSCSEG00000011160	rab20	100	80.000	ENSSMAG00000018818	rab20	100	80.000	Scophthalmus_maximus
ENSCSEG00000011160	rab20	100	80.545	ENSSDUG00000005148	rab20	98	80.545	Seriola_dumerili
ENSCSEG00000011160	rab20	100	66.949	ENSTGUG00000008797	RAB20	99	66.949	Taeniopygia_guttata
ENSCSEG00000011160	rab20	100	75.000	ENSTRUG00000022951	rab20	97	75.000	Takifugu_rubripes
ENSCSEG00000011160	rab20	94	82.353	ENSTNIG00000013920	rab20	99	79.915	Tetraodon_nigroviridis