EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000011165 (Gene tree)
Gene ID: 103394774
Gene Symbol: npm1a
Alias: npm1|sb:cb487
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 6046 bases
Position: chr19:538937-544982
Accession: 103394774
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000017431	Nucleoplasmin	PF03066.15	1.4e-32	1	1
ENSCSEP00000017415	Nucleoplasmin	PF03066.15	1.7e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000017633	-	3169	XM_008332212	ENSCSEP00000017415	243 (aa)	-	-
ENSCSET00000017649	-	702	-	ENSCSEP00000017431	233 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000011165's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000011165's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000011165	npm1a	96	32.776	ENSCSEG00000004530	npm1b	96	37.631

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000011165	npm1a	96	84.314	ENSAPOG00000002813	npm1a	76	84.314	Acanthochromis_polyacanthus
ENSCSEG00000011165	npm1a	85	81.818	ENSACIG00000014201	npm1a	100	61.172	Amphilophus_citrinellus
ENSCSEG00000011165	npm1a	86	69.528	ENSAOCG00000004978	npm1a	100	69.528	Amphiprion_ocellaris
ENSCSEG00000011165	npm1a	96	85.621	ENSAPEG00000008594	npm1a	100	61.667	Amphiprion_percula
ENSCSEG00000011165	npm1a	96	86.928	ENSATEG00000008885	npm1a	100	63.430	Anabas_testudineus
ENSCSEG00000011165	npm1a	93	66.667	ENSACLG00000008376	npm1a	94	66.406	Astatotilapia_calliptera
ENSCSEG00000011165	npm1a	98	58.015	ENSAMXG00000010155	npm1a	99	60.305	Astyanax_mexicanus
ENSCSEG00000011165	npm1a	97	75.484	ENSCVAG00000008960	npm1a	100	56.419	Cyprinodon_variegatus
ENSCSEG00000011165	npm1a	91	71.528	ENSDARG00000014329	npm1a	89	70.833	Danio_rerio
ENSCSEG00000011165	npm1a	80	48.485	ENSEBUG00000012753	npm1a	76	33.992	Eptatretus_burgeri
ENSCSEG00000011165	npm1a	96	81.699	ENSELUG00000013705	npm1a	100	56.314	Esox_lucius
ENSCSEG00000011165	npm1a	96	76.774	ENSFHEG00000012496	npm1a	100	57.333	Fundulus_heteroclitus
ENSCSEG00000011165	npm1a	82	77.049	ENSGAFG00000013059	npm1a	100	54.967	Gambusia_affinis
ENSCSEG00000011165	npm1a	83	82.946	ENSGACG00000020319	npm1a	99	64.664	Gasterosteus_aculeatus
ENSCSEG00000011165	npm1a	93	82.609	ENSHBUG00000000776	npm1a	100	58.861	Haplochromis_burtoni
ENSCSEG00000011165	npm1a	99	56.371	ENSHCOG00000001059	npm1a	98	57.143	Hippocampus_comes
ENSCSEG00000011165	npm1a	97	51.379	ENSIPUG00000019452	npm1	99	51.953	Ictalurus_punctatus
ENSCSEG00000011165	npm1a	100	59.107	ENSKMAG00000010709	npm1a	100	58.076	Kryptolebias_marmoratus
ENSCSEG00000011165	npm1a	96	83.117	ENSLBEG00000008793	npm1a	76	83.117	Labrus_bergylta
ENSCSEG00000011165	npm1a	75	73.077	ENSLOCG00000009683	npm1a	82	64.220	Lepisosteus_oculatus
ENSCSEG00000011165	npm1a	96	84.314	ENSMAMG00000009344	npm1a	63	82.353	Mastacembelus_armatus
ENSCSEG00000011165	npm1a	92	88.525	ENSMZEG00005013717	npm1a	94	68.000	Maylandia_zebra
ENSCSEG00000011165	npm1a	90	82.734	ENSMMOG00000007980	npm1a	100	61.818	Mola_mola
ENSCSEG00000011165	npm1a	91	86.207	ENSMALG00000001146	npm1a	100	57.895	Monopterus_albus
ENSCSEG00000011165	npm1a	99	58.442	ENSNBRG00000013172	npm1a	100	59.740	Neolamprologus_brichardi
ENSCSEG00000011165	npm1a	90	85.065	ENSONIG00000001860	npm1a	99	60.726	Oreochromis_niloticus
ENSCSEG00000011165	npm1a	96	79.739	ENSORLG00000010179	npm1a	100	58.219	Oryzias_latipes
ENSCSEG00000011165	npm1a	96	79.739	ENSORLG00020020817	npm1a	100	58.763	Oryzias_latipes_hni
ENSCSEG00000011165	npm1a	96	79.739	ENSORLG00015003439	npm1a	100	58.562	Oryzias_latipes_hsok
ENSCSEG00000011165	npm1a	99	76.582	ENSOMEG00000007083	npm1a	100	57.679	Oryzias_melastigma
ENSCSEG00000011165	npm1a	100	59.477	ENSPKIG00000023943	npm1a	100	44.884	Paramormyrops_kingsleyae
ENSCSEG00000011165	npm1a	100	53.285	ENSPMGG00000011716	npm1a	100	56.934	Periophthalmus_magnuspinnatus
ENSCSEG00000011165	npm1a	96	74.675	ENSPFOG00000019173	npm1a	100	56.655	Poecilia_formosa
ENSCSEG00000011165	npm1a	83	78.689	ENSPLAG00000001093	npm1a	100	54.362	Poecilia_latipinna
ENSCSEG00000011165	npm1a	96	74.675	ENSPMEG00000012523	npm1a	100	55.518	Poecilia_mexicana
ENSCSEG00000011165	npm1a	83	81.148	ENSPREG00000001647	npm1a	100	56.522	Poecilia_reticulata
ENSCSEG00000011165	npm1a	89	86.275	ENSPNYG00000019321	npm1a	100	59.164	Pundamilia_nyererei
ENSCSEG00000011165	npm1a	98	53.793	ENSPNAG00000026891	npm1a	99	53.448	Pygocentrus_nattereri
ENSCSEG00000011165	npm1a	100	54.196	ENSSFOG00015007074	npm1a	100	53.846	Scleropages_formosus
ENSCSEG00000011165	npm1a	100	81.646	ENSSMAG00000019090	npm1a	100	59.322	Scophthalmus_maximus
ENSCSEG00000011165	npm1a	100	64.430	ENSSDUG00000015609	npm1a	100	64.094	Seriola_dumerili
ENSCSEG00000011165	npm1a	93	87.705	ENSSLDG00000017849	npm1a	100	59.732	Seriola_lalandi_dorsalis
ENSCSEG00000011165	npm1a	100	76.613	ENSSPAG00000021660	npm1a	100	76.613	Stegastes_partitus
ENSCSEG00000011165	npm1a	100	81.935	ENSTRUG00000024003	npm1a	100	60.927	Takifugu_rubripes
ENSCSEG00000011165	npm1a	100	53.265	ENSTNIG00000010773	npm1a	100	61.512	Tetraodon_nigroviridis
ENSCSEG00000011165	npm1a	98	59.551	ENSXCOG00000005958	npm1a	98	59.551	Xiphophorus_couchianus
ENSCSEG00000011165	npm1a	95	75.000	ENSXMAG00000000396	npm1a	100	53.795	Xiphophorus_maculatus