EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000011261 (Gene tree)
Gene ID: 103381665
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 6239 bases
Position: chr8:4649097-4655335
Accession: 103381665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000017560	TruB_N	PF01509.18	1.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000017778	-	4793	XM_008314146	ENSCSEP00000017560	309 (aa)	XP_008312368	UPI000495305A

Gene Model

Click here to download ENSCSEG00000011261's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000011261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000011261	trub1	97	56.250	ENSG00000165832	TRUB1	73	62.500	Homo_sapiens
ENSCSEG00000011261	trub1	79	79.918	ENSAPOG00000020565	trub1	95	77.395	Acanthochromis_polyacanthus
ENSCSEG00000011261	trub1	98	56.908	ENSAMEG00000014931	TRUB1	73	62.403	Ailuropoda_melanoleuca
ENSCSEG00000011261	trub1	87	70.370	ENSACIG00000003060	trub1	86	72.763	Amphilophus_citrinellus
ENSCSEG00000011261	trub1	79	80.328	ENSAOCG00000017188	trub1	95	77.778	Amphiprion_ocellaris
ENSCSEG00000011261	trub1	83	78.988	ENSAPEG00000015209	trub1	95	78.161	Amphiprion_percula
ENSCSEG00000011261	trub1	79	81.224	ENSATEG00000023291	trub1	88	81.224	Anabas_testudineus
ENSCSEG00000011261	trub1	79	65.984	ENSAPLG00000006808	TRUB1	87	65.984	Anas_platyrhynchos
ENSCSEG00000011261	trub1	85	62.595	ENSACAG00000009282	TRUB1	91	64.143	Anolis_carolinensis
ENSCSEG00000011261	trub1	83	62.500	ENSANAG00000022870	TRUB1	73	62.500	Aotus_nancymaae
ENSCSEG00000011261	trub1	87	76.296	ENSACLG00000000823	trub1	95	77.273	Astatotilapia_calliptera
ENSCSEG00000011261	trub1	83	72.093	ENSAMXG00000015845	trub1	83	73.896	Astyanax_mexicanus
ENSCSEG00000011261	trub1	97	57.143	ENSBTAG00000012955	TRUB1	73	62.891	Bos_taurus
ENSCSEG00000011261	trub1	97	56.811	ENSCJAG00000047815	TRUB1	73	62.500	Callithrix_jacchus
ENSCSEG00000011261	trub1	94	58.966	ENSCAFG00000011688	TRUB1	70	64.898	Canis_familiaris
ENSCSEG00000011261	trub1	94	58.966	ENSCAFG00020013237	TRUB1	70	64.898	Canis_lupus_dingo
ENSCSEG00000011261	trub1	97	57.143	ENSCHIG00000020884	TRUB1	77	62.891	Capra_hircus
ENSCSEG00000011261	trub1	97	56.146	ENSTSYG00000000446	TRUB1	73	61.719	Carlito_syrichta
ENSCSEG00000011261	trub1	83	51.562	ENSCAPG00000017088	TRUB1	82	57.346	Cavia_aperea
ENSCSEG00000011261	trub1	63	61.856	ENSCPOG00000040236	-	80	61.856	Cavia_porcellus
ENSCSEG00000011261	trub1	60	63.978	ENSCPOG00000030129	-	72	63.978	Cavia_porcellus
ENSCSEG00000011261	trub1	97	56.811	ENSCCAG00000028842	TRUB1	73	62.500	Cebus_capucinus
ENSCSEG00000011261	trub1	97	56.811	ENSCATG00000033431	TRUB1	73	62.500	Cercocebus_atys
ENSCSEG00000011261	trub1	63	61.340	ENSCLAG00000008664	TRUB1	80	61.340	Chinchilla_lanigera
ENSCSEG00000011261	trub1	97	56.811	ENSCSAG00000004891	TRUB1	73	62.500	Chlorocebus_sabaeus
ENSCSEG00000011261	trub1	82	54.331	ENSCHOG00000011931	TRUB1	73	54.331	Choloepus_hoffmanni
ENSCSEG00000011261	trub1	79	66.939	ENSCPBG00000003051	TRUB1	84	66.939	Chrysemys_picta_bellii
ENSCSEG00000011261	trub1	97	56.811	ENSCANG00000029445	TRUB1	73	62.500	Colobus_angolensis_palliatus
ENSCSEG00000011261	trub1	83	59.144	ENSCGRG00001016772	-	71	65.421	Cricetulus_griseus_chok1gshd
ENSCSEG00000011261	trub1	92	52.281	ENSCGRG00001010322	-	68	55.512	Cricetulus_griseus_chok1gshd
ENSCSEG00000011261	trub1	92	58.657	ENSCGRG00000010806	Trub1	75	64.490	Cricetulus_griseus_crigri
ENSCSEG00000011261	trub1	81	75.600	ENSCVAG00000008791	trub1	77	75.600	Cyprinodon_variegatus
ENSCSEG00000011261	trub1	87	69.231	ENSDARG00000053805	trub1	91	69.925	Danio_rerio
ENSCSEG00000011261	trub1	91	57.447	ENSDNOG00000001069	TRUB1	73	60.784	Dasypus_novemcinctus
ENSCSEG00000011261	trub1	77	63.445	ENSDORG00000010431	Trub1	74	61.719	Dipodomys_ordii
ENSCSEG00000011261	trub1	58	64.964	ENSETEG00000009183	TRUB1	50	65.441	Echinops_telfairi
ENSCSEG00000011261	trub1	97	56.478	ENSEASG00005014739	TRUB1	73	62.109	Equus_asinus_asinus
ENSCSEG00000011261	trub1	97	56.478	ENSECAG00000007177	TRUB1	73	62.109	Equus_caballus
ENSCSEG00000011261	trub1	94	50.690	ENSEEUG00000013993	TRUB1	68	55.102	Erinaceus_europaeus
ENSCSEG00000011261	trub1	82	74.704	ENSELUG00000000502	trub1	88	74.704	Esox_lucius
ENSCSEG00000011261	trub1	98	57.285	ENSFCAG00000031927	TRUB1	73	63.281	Felis_catus
ENSCSEG00000011261	trub1	70	66.047	ENSFALG00000002232	TRUB1	83	66.047	Ficedula_albicollis
ENSCSEG00000011261	trub1	63	62.887	ENSFDAG00000008140	TRUB1	80	62.887	Fukomys_damarensis
ENSCSEG00000011261	trub1	85	74.046	ENSFHEG00000004016	trub1	90	74.046	Fundulus_heteroclitus
ENSCSEG00000011261	trub1	88	60.148	ENSGALG00000009091	TRUB1	86	64.344	Gallus_gallus
ENSCSEG00000011261	trub1	88	72.794	ENSGAFG00000009193	trub1	85	77.778	Gambusia_affinis
ENSCSEG00000011261	trub1	63	82.474	ENSGACG00000015387	trub1	95	82.474	Gasterosteus_aculeatus
ENSCSEG00000011261	trub1	83	65.234	ENSGAGG00000009758	TRUB1	73	65.234	Gopherus_agassizii
ENSCSEG00000011261	trub1	97	56.579	ENSGGOG00000004583	TRUB1	73	62.891	Gorilla_gorilla
ENSCSEG00000011261	trub1	87	76.208	ENSHBUG00000016787	trub1	95	77.186	Haplochromis_burtoni
ENSCSEG00000011261	trub1	97	55.814	ENSHGLG00000015314	TRUB1	73	61.719	Heterocephalus_glaber_female
ENSCSEG00000011261	trub1	63	61.856	ENSHGLG00100009183	TRUB1	82	61.856	Heterocephalus_glaber_male
ENSCSEG00000011261	trub1	84	80.077	ENSHCOG00000017877	trub1	95	80.077	Hippocampus_comes
ENSCSEG00000011261	trub1	89	66.787	ENSIPUG00000017559	trub1	87	71.660	Ictalurus_punctatus
ENSCSEG00000011261	trub1	79	64.228	ENSSTOG00000003641	TRUB1	74	64.490	Ictidomys_tridecemlineatus
ENSCSEG00000011261	trub1	83	61.961	ENSJJAG00000011800	Trub1	75	61.961	Jaculus_jaculus
ENSCSEG00000011261	trub1	85	74.144	ENSKMAG00000006232	trub1	95	74.144	Kryptolebias_marmoratus
ENSCSEG00000011261	trub1	89	76.812	ENSLBEG00000026722	trub1	91	79.693	Labrus_bergylta
ENSCSEG00000011261	trub1	94	60.616	ENSLACG00000014885	TRUB1	83	66.667	Latimeria_chalumnae
ENSCSEG00000011261	trub1	83	69.922	ENSLOCG00000012979	trub1	83	71.837	Lepisosteus_oculatus
ENSCSEG00000011261	trub1	79	64.490	ENSLAFG00000015452	TRUB1	70	64.490	Loxodonta_africana
ENSCSEG00000011261	trub1	97	57.143	ENSMFAG00000031767	TRUB1	73	62.500	Macaca_fascicularis
ENSCSEG00000011261	trub1	97	56.811	ENSMMUG00000001902	TRUB1	73	62.500	Macaca_mulatta
ENSCSEG00000011261	trub1	97	52.492	ENSMNEG00000044646	TRUB1	72	57.812	Macaca_nemestrina
ENSCSEG00000011261	trub1	97	56.811	ENSMLEG00000042655	TRUB1	73	62.500	Mandrillus_leucophaeus
ENSCSEG00000011261	trub1	87	76.296	ENSMZEG00005024095	trub1	95	77.273	Maylandia_zebra
ENSCSEG00000011261	trub1	79	65.164	ENSMGAG00000011135	TRUB1	84	65.164	Meleagris_gallopavo
ENSCSEG00000011261	trub1	92	56.690	ENSMAUG00000011101	Trub1	75	60.156	Mesocricetus_auratus
ENSCSEG00000011261	trub1	83	62.500	ENSMICG00000016324	TRUB1	73	62.500	Microcebus_murinus
ENSCSEG00000011261	trub1	92	59.364	ENSMOCG00000017759	Trub1	74	65.041	Microtus_ochrogaster
ENSCSEG00000011261	trub1	79	65.984	ENSMODG00000009676	TRUB1	71	63.424	Monodelphis_domestica
ENSCSEG00000011261	trub1	93	57.840	MGP_CAROLIEiJ_G0023100	Trub1	76	65.241	Mus_caroli
ENSCSEG00000011261	trub1	78	62.810	ENSMUSG00000025086	Trub1	76	64.171	Mus_musculus
ENSCSEG00000011261	trub1	83	60.547	MGP_PahariEiJ_G0014588	Trub1	76	60.547	Mus_pahari
ENSCSEG00000011261	trub1	93	57.143	MGP_SPRETEiJ_G0024021	Trub1	76	64.171	Mus_spretus
ENSCSEG00000011261	trub1	98	57.285	ENSMPUG00000003556	TRUB1	73	62.891	Mustela_putorius_furo
ENSCSEG00000011261	trub1	79	63.673	ENSMLUG00000017686	TRUB1	72	63.673	Myotis_lucifugus
ENSCSEG00000011261	trub1	97	56.478	ENSNGAG00000018682	Trub1	74	62.109	Nannospalax_galili
ENSCSEG00000011261	trub1	82	79.447	ENSNBRG00000023393	trub1	90	79.447	Neolamprologus_brichardi
ENSCSEG00000011261	trub1	97	56.579	ENSNLEG00000016345	TRUB1	73	62.891	Nomascus_leucogenys
ENSCSEG00000011261	trub1	65	69.154	ENSMEUG00000006603	TRUB1	78	66.667	Notamacropus_eugenii
ENSCSEG00000011261	trub1	79	64.082	ENSOPRG00000009371	TRUB1	71	64.082	Ochotona_princeps
ENSCSEG00000011261	trub1	83	60.784	ENSODEG00000010854	TRUB1	73	60.784	Octodon_degus
ENSCSEG00000011261	trub1	87	76.296	ENSONIG00000007249	trub1	96	77.273	Oreochromis_niloticus
ENSCSEG00000011261	trub1	89	59.643	ENSOANG00000001556	TRUB1	81	63.821	Ornithorhynchus_anatinus
ENSCSEG00000011261	trub1	81	63.095	ENSOCUG00000009456	TRUB1	73	63.095	Oryctolagus_cuniculus
ENSCSEG00000011261	trub1	84	74.903	ENSORLG00000029719	trub1	92	75.097	Oryzias_latipes
ENSCSEG00000011261	trub1	84	74.903	ENSORLG00020016767	trub1	91	75.097	Oryzias_latipes_hni
ENSCSEG00000011261	trub1	84	74.517	ENSORLG00015014728	trub1	92	74.319	Oryzias_latipes_hsok
ENSCSEG00000011261	trub1	81	76.800	ENSOMEG00000014556	trub1	88	76.800	Oryzias_melastigma
ENSCSEG00000011261	trub1	97	56.811	ENSOGAG00000015895	TRUB1	73	62.500	Otolemur_garnettii
ENSCSEG00000011261	trub1	94	57.576	ENSOARG00000015591	TRUB1	75	61.597	Ovis_aries
ENSCSEG00000011261	trub1	97	56.579	ENSPPAG00000043645	TRUB1	73	62.891	Pan_paniscus
ENSCSEG00000011261	trub1	98	56.623	ENSPPRG00000007096	TRUB1	73	62.500	Panthera_pardus
ENSCSEG00000011261	trub1	98	56.954	ENSPTIG00000006378	TRUB1	73	62.891	Panthera_tigris_altaica
ENSCSEG00000011261	trub1	97	56.579	ENSPTRG00000002964	TRUB1	73	62.891	Pan_troglodytes
ENSCSEG00000011261	trub1	97	56.811	ENSPANG00000020712	TRUB1	73	62.500	Papio_anubis
ENSCSEG00000011261	trub1	55	72.515	ENSPKIG00000003852	trub1	74	72.515	Paramormyrops_kingsleyae
ENSCSEG00000011261	trub1	80	67.073	ENSPSIG00000012877	TRUB1	84	67.073	Pelodiscus_sinensis
ENSCSEG00000011261	trub1	82	73.518	ENSPMGG00000000075	trub1	91	73.518	Periophthalmus_magnuspinnatus
ENSCSEG00000011261	trub1	97	57.143	ENSPEMG00000011156	Trub1	75	62.891	Peromyscus_maniculatus_bairdii
ENSCSEG00000011261	trub1	79	65.984	ENSPCIG00000009729	TRUB1	68	65.079	Phascolarctos_cinereus
ENSCSEG00000011261	trub1	82	78.346	ENSPFOG00000009950	trub1	93	78.346	Poecilia_formosa
ENSCSEG00000011261	trub1	82	78.656	ENSPLAG00000013855	trub1	89	78.656	Poecilia_latipinna
ENSCSEG00000011261	trub1	82	78.656	ENSPMEG00000009064	trub1	92	78.346	Poecilia_mexicana
ENSCSEG00000011261	trub1	82	78.261	ENSPREG00000003343	trub1	91	78.261	Poecilia_reticulata
ENSCSEG00000011261	trub1	97	56.250	ENSPPYG00000002676	TRUB1	73	62.500	Pongo_abelii
ENSCSEG00000011261	trub1	94	53.793	ENSPCAG00000008427	TRUB1	69	58.607	Procavia_capensis
ENSCSEG00000011261	trub1	83	57.422	ENSPCOG00000024360	TRUB1	72	56.641	Propithecus_coquereli
ENSCSEG00000011261	trub1	65	67.327	ENSPVAG00000007575	TRUB1	81	64.789	Pteropus_vampyrus
ENSCSEG00000011261	trub1	87	76.296	ENSPNYG00000018614	trub1	95	77.273	Pundamilia_nyererei
ENSCSEG00000011261	trub1	83	62.403	ENSPNAG00000006881	trub1	83	62.353	Pygocentrus_nattereri
ENSCSEG00000011261	trub1	97	55.150	ENSRNOG00000017321	Trub1	75	60.156	Rattus_norvegicus
ENSCSEG00000011261	trub1	97	48.515	ENSRBIG00000033423	TRUB1	71	52.713	Rhinopithecus_bieti
ENSCSEG00000011261	trub1	97	56.811	ENSRROG00000033902	TRUB1	73	62.500	Rhinopithecus_roxellana
ENSCSEG00000011261	trub1	97	56.811	ENSSBOG00000024237	TRUB1	73	62.500	Saimiri_boliviensis_boliviensis
ENSCSEG00000011261	trub1	69	66.047	ENSSHAG00000009346	TRUB1	72	66.047	Sarcophilus_harrisii
ENSCSEG00000011261	trub1	82	74.603	ENSSFOG00015022124	trub1	86	74.603	Scleropages_formosus
ENSCSEG00000011261	trub1	88	78.229	ENSSMAG00000001020	trub1	93	79.693	Scophthalmus_maximus
ENSCSEG00000011261	trub1	79	81.557	ENSSDUG00000016414	trub1	94	79.008	Seriola_dumerili
ENSCSEG00000011261	trub1	79	81.148	ENSSLDG00000015486	trub1	94	78.626	Seriola_lalandi_dorsalis
ENSCSEG00000011261	trub1	88	61.314	ENSSPUG00000001642	TRUB1	87	64.427	Sphenodon_punctatus
ENSCSEG00000011261	trub1	87	75.746	ENSSPAG00000001217	trub1	94	77.011	Stegastes_partitus
ENSCSEG00000011261	trub1	83	62.500	ENSSSCG00000010653	TRUB1	75	62.500	Sus_scrofa
ENSCSEG00000011261	trub1	79	65.984	ENSTGUG00000010971	TRUB1	90	64.032	Taeniopygia_guttata
ENSCSEG00000011261	trub1	68	54.502	ENSTBEG00000002880	TRUB1	83	54.502	Tupaia_belangeri
ENSCSEG00000011261	trub1	69	64.319	ENSTTRG00000005767	TRUB1	81	64.319	Tursiops_truncatus
ENSCSEG00000011261	trub1	98	57.285	ENSUAMG00000024876	TRUB1	73	62.891	Ursus_americanus
ENSCSEG00000011261	trub1	94	58.763	ENSUMAG00000002411	TRUB1	72	66.667	Ursus_maritimus
ENSCSEG00000011261	trub1	83	63.281	ENSVPAG00000005507	TRUB1	73	63.281	Vicugna_pacos
ENSCSEG00000011261	trub1	94	58.966	ENSVVUG00000010085	TRUB1	59	64.898	Vulpes_vulpes
ENSCSEG00000011261	trub1	78	66.116	ENSXETG00000023828	trub1	87	66.116	Xenopus_tropicalis
ENSCSEG00000011261	trub1	90	72.401	ENSXCOG00000017847	trub1	86	79.752	Xiphophorus_couchianus
ENSCSEG00000011261	trub1	82	78.261	ENSXMAG00000014701	trub1	92	77.953	Xiphophorus_maculatus