EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000011919 (Gene tree)
Gene ID: 103389956
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 14693 bases
Position: chr14:18162583-18177275
Accession: 103389956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000018755	ResIII	PF04851.15	7.2e-07	1	1
ENSCSEP00000018672	ResIII	PF04851.15	8.3e-07	1	1
ENSCSEP00000018710	ResIII	PF04851.15	8.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000018989	-	4014	-	ENSCSEP00000018755	1337 (aa)	-	-
ENSCSET00000018944	-	4358	XM_008325606	ENSCSEP00000018710	1397 (aa)	XP_008323828	UPI000496C5F2
ENSCSET00000018903	-	6882	XM_008325603	ENSCSEP00000018672	1397 (aa)	XP_008323825	UPI000496C5F2

Gene Model

Click here to download ENSCSEG00000011919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000011919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000011919	sbno1	83	53.714	ENSCSEG00000006856	si:ch73-63e15.2	83	59.184

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000011919	sbno1	99	75.158	ENSG00000139697	SBNO1	99	74.508	Homo_sapiens
ENSCSEG00000011919	sbno1	86	93.200	ENSAPOG00000003196	sbno1	98	93.043	Acanthochromis_polyacanthus
ENSCSEG00000011919	sbno1	99	75.280	ENSAMEG00000015151	SBNO1	99	74.300	Ailuropoda_melanoleuca
ENSCSEG00000011919	sbno1	100	85.826	ENSACIG00000008088	sbno1	99	85.897	Amphilophus_citrinellus
ENSCSEG00000011919	sbno1	100	90.014	ENSAOCG00000014859	sbno1	99	90.014	Amphiprion_ocellaris
ENSCSEG00000011919	sbno1	100	89.943	ENSAPEG00000006069	sbno1	99	89.943	Amphiprion_percula
ENSCSEG00000011919	sbno1	100	91.032	ENSATEG00000006667	sbno1	100	91.032	Anabas_testudineus
ENSCSEG00000011919	sbno1	98	75.662	ENSAPLG00000015674	SBNO1	99	75.071	Anas_platyrhynchos
ENSCSEG00000011919	sbno1	98	74.129	ENSACAG00000015441	SBNO1	88	73.422	Anolis_carolinensis
ENSCSEG00000011919	sbno1	95	83.122	ENSANAG00000029958	-	99	82.554	Aotus_nancymaae
ENSCSEG00000011919	sbno1	100	85.620	ENSACLG00000024913	sbno1	100	84.531	Astatotilapia_calliptera
ENSCSEG00000011919	sbno1	100	80.780	ENSAMXG00000019473	sbno1	100	80.780	Astyanax_mexicanus
ENSCSEG00000011919	sbno1	100	75.473	ENSBTAG00000020505	SBNO1	99	74.684	Bos_taurus
ENSCSEG00000011919	sbno1	99	75.493	ENSCJAG00000016599	SBNO1	99	74.471	Callithrix_jacchus
ENSCSEG00000011919	sbno1	99	75.420	ENSCAFG00000007503	SBNO1	97	84.722	Canis_familiaris
ENSCSEG00000011919	sbno1	96	80.357	ENSCAFG00020015363	SBNO1	99	80.610	Canis_lupus_dingo
ENSCSEG00000011919	sbno1	96	82.353	ENSCHIG00000008382	SBNO1	99	83.213	Capra_hircus
ENSCSEG00000011919	sbno1	99	75.175	ENSTSYG00000012749	SBNO1	99	76.036	Carlito_syrichta
ENSCSEG00000011919	sbno1	96	76.510	ENSCAPG00000000384	SBNO1	99	83.363	Cavia_aperea
ENSCSEG00000011919	sbno1	95	83.363	ENSCPOG00000008109	SBNO1	99	83.363	Cavia_porcellus
ENSCSEG00000011919	sbno1	99	70.965	ENSCCAG00000035316	SBNO1	99	71.841	Cebus_capucinus
ENSCSEG00000011919	sbno1	91	82.765	ENSCATG00000008239	SBNO1	98	82.765	Cercocebus_atys
ENSCSEG00000011919	sbno1	95	83.363	ENSCLAG00000008995	SBNO1	99	83.363	Chinchilla_lanigera
ENSCSEG00000011919	sbno1	86	80.684	ENSCSAG00000002064	SBNO1	99	80.379	Chlorocebus_sabaeus
ENSCSEG00000011919	sbno1	96	73.016	ENSCHOG00000008814	SBNO1	96	72.249	Choloepus_hoffmanni
ENSCSEG00000011919	sbno1	98	75.341	ENSCPBG00000025968	SBNO1	99	74.682	Chrysemys_picta_bellii
ENSCSEG00000011919	sbno1	99	71.459	ENSCANG00000042688	-	99	70.807	Colobus_angolensis_palliatus
ENSCSEG00000011919	sbno1	96	81.105	ENSCGRG00001017470	Sbno1	99	81.362	Cricetulus_griseus_chok1gshd
ENSCSEG00000011919	sbno1	96	81.105	ENSCGRG00000004756	Sbno1	99	81.362	Cricetulus_griseus_crigri
ENSCSEG00000011919	sbno1	100	87.562	ENSCVAG00000007038	sbno1	100	87.775	Cyprinodon_variegatus
ENSCSEG00000011919	sbno1	100	80.611	ENSDARG00000099080	sbno1	100	80.567	Danio_rerio
ENSCSEG00000011919	sbno1	99	77.524	ENSDNOG00000017147	SBNO1	96	77.524	Dasypus_novemcinctus
ENSCSEG00000011919	sbno1	99	71.552	ENSDORG00000015261	Sbno1	99	70.860	Dipodomys_ordii
ENSCSEG00000011919	sbno1	93	70.755	ENSETEG00000005620	SBNO1	93	70.755	Echinops_telfairi
ENSCSEG00000011919	sbno1	74	63.495	ENSEBUG00000013823	sbno1	93	62.536	Eptatretus_burgeri
ENSCSEG00000011919	sbno1	51	72.879	ENSEASG00005012595	-	92	73.398	Equus_asinus_asinus
ENSCSEG00000011919	sbno1	99	75.386	ENSECAG00000006127	SBNO1	99	75.308	Equus_caballus
ENSCSEG00000011919	sbno1	83	76.374	ENSEEUG00000003793	SBNO1	82	76.374	Erinaceus_europaeus
ENSCSEG00000011919	sbno1	100	82.908	ENSELUG00000002886	sbno1	99	81.857	Esox_lucius
ENSCSEG00000011919	sbno1	99	75.596	ENSFCAG00000015331	SBNO1	99	74.596	Felis_catus
ENSCSEG00000011919	sbno1	98	75.591	ENSFALG00000009273	SBNO1	99	74.859	Ficedula_albicollis
ENSCSEG00000011919	sbno1	95	80.616	ENSFDAG00000014232	SBNO1	99	80.072	Fukomys_damarensis
ENSCSEG00000011919	sbno1	100	87.411	ENSFHEG00000007360	sbno1	100	87.624	Fundulus_heteroclitus
ENSCSEG00000011919	sbno1	95	84.789	ENSGMOG00000018229	sbno1	99	85.090	Gadus_morhua
ENSCSEG00000011919	sbno1	88	75.476	ENSGALG00000003392	SBNO1	99	75.020	Gallus_gallus
ENSCSEG00000011919	sbno1	100	87.909	ENSGAFG00000003960	sbno1	100	87.838	Gambusia_affinis
ENSCSEG00000011919	sbno1	95	88.271	ENSGACG00000015633	sbno1	99	88.195	Gasterosteus_aculeatus
ENSCSEG00000011919	sbno1	94	84.962	ENSGAGG00000001065	SBNO1	99	83.692	Gopherus_agassizii
ENSCSEG00000011919	sbno1	95	83.183	ENSGGOG00000015000	SBNO1	99	83.183	Gorilla_gorilla
ENSCSEG00000011919	sbno1	100	79.418	ENSHBUG00000011910	sbno1	100	78.086	Haplochromis_burtoni
ENSCSEG00000011919	sbno1	95	83.666	ENSHGLG00000014165	-	99	83.094	Heterocephalus_glaber_female
ENSCSEG00000011919	sbno1	91	92.079	ENSHCOG00000003246	sbno1	95	92.079	Hippocampus_comes
ENSCSEG00000011919	sbno1	100	81.348	ENSIPUG00000015830	Sbno1	98	81.235	Ictalurus_punctatus
ENSCSEG00000011919	sbno1	96	82.500	ENSSTOG00000023221	SBNO1	99	82.765	Ictidomys_tridecemlineatus
ENSCSEG00000011919	sbno1	96	78.253	ENSJJAG00000001741	Sbno1	99	78.495	Jaculus_jaculus
ENSCSEG00000011919	sbno1	100	88.628	ENSKMAG00000009696	sbno1	100	88.486	Kryptolebias_marmoratus
ENSCSEG00000011919	sbno1	100	88.210	ENSLBEG00000007623	sbno1	100	88.139	Labrus_bergylta
ENSCSEG00000011919	sbno1	100	72.045	ENSLACG00000017227	SBNO1	99	74.940	Latimeria_chalumnae
ENSCSEG00000011919	sbno1	100	80.872	ENSLOCG00000005725	sbno1	97	80.239	Lepisosteus_oculatus
ENSCSEG00000011919	sbno1	99	74.895	ENSLAFG00000002135	SBNO1	99	74.175	Loxodonta_africana
ENSCSEG00000011919	sbno1	96	79.152	ENSMFAG00000031429	SBNO1	99	79.396	Macaca_fascicularis
ENSCSEG00000011919	sbno1	96	79.152	ENSMMUG00000011496	SBNO1	99	79.396	Macaca_mulatta
ENSCSEG00000011919	sbno1	96	82.321	ENSMLEG00000033260	SBNO1	99	82.585	Mandrillus_leucophaeus
ENSCSEG00000011919	sbno1	100	90.612	ENSMAMG00000005473	sbno1	100	90.825	Mastacembelus_armatus
ENSCSEG00000011919	sbno1	98	75.771	ENSMGAG00000003274	SBNO1	99	75.106	Meleagris_gallopavo
ENSCSEG00000011919	sbno1	95	80.218	ENSMICG00000006573	-	99	79.676	Microcebus_murinus
ENSCSEG00000011919	sbno1	96	81.818	ENSMOCG00000009390	Sbno1	99	82.671	Microtus_ochrogaster
ENSCSEG00000011919	sbno1	100	83.053	ENSMMOG00000008691	sbno1	99	83.012	Mola_mola
ENSCSEG00000011919	sbno1	99	75.123	ENSMODG00000012470	SBNO1	98	74.491	Monodelphis_domestica
ENSCSEG00000011919	sbno1	100	89.126	ENSMALG00000001056	sbno1	100	89.197	Monopterus_albus
ENSCSEG00000011919	sbno1	99	75.529	MGP_CAROLIEiJ_G0027749	Sbno1	95	90.351	Mus_caroli
ENSCSEG00000011919	sbno1	99	75.158	ENSMUSG00000038095	Sbno1	94	90.351	Mus_musculus
ENSCSEG00000011919	sbno1	99	75.584	MGP_PahariEiJ_G0024329	Sbno1	95	90.351	Mus_pahari
ENSCSEG00000011919	sbno1	99	75.617	MGP_SPRETEiJ_G0028747	Sbno1	95	90.351	Mus_spretus
ENSCSEG00000011919	sbno1	99	75.579	ENSMPUG00000001658	SBNO1	99	74.596	Mustela_putorius_furo
ENSCSEG00000011919	sbno1	99	74.912	ENSMLUG00000017159	SBNO1	99	74.175	Myotis_lucifugus
ENSCSEG00000011919	sbno1	92	83.852	ENSNGAG00000012620	Sbno1	98	83.852	Nannospalax_galili
ENSCSEG00000011919	sbno1	100	85.296	ENSNBRG00000019189	sbno1	100	85.082	Neolamprologus_brichardi
ENSCSEG00000011919	sbno1	99	72.561	ENSNLEG00000001502	SBNO1	99	75.224	Nomascus_leucogenys
ENSCSEG00000011919	sbno1	62	72.956	ENSMEUG00000008768	-	93	75.472	Notamacropus_eugenii
ENSCSEG00000011919	sbno1	99	74.437	ENSOPRG00000011054	SBNO1	99	73.892	Ochotona_princeps
ENSCSEG00000011919	sbno1	95	83.544	ENSODEG00000009997	SBNO1	99	83.544	Octodon_degus
ENSCSEG00000011919	sbno1	100	88.644	ENSONIG00000015348	sbno1	100	88.502	Oreochromis_niloticus
ENSCSEG00000011919	sbno1	98	74.603	ENSOCUG00000002441	SBNO1	95	73.891	Oryctolagus_cuniculus
ENSCSEG00000011919	sbno1	100	87.509	ENSORLG00000001593	sbno1	100	87.216	Oryzias_latipes
ENSCSEG00000011919	sbno1	100	87.500	ENSORLG00020015216	sbno1	100	87.784	Oryzias_latipes_hni
ENSCSEG00000011919	sbno1	100	87.642	ENSORLG00015002726	sbno1	100	87.784	Oryzias_latipes_hsok
ENSCSEG00000011919	sbno1	99	87.429	ENSOMEG00000019313	sbno1	99	87.571	Oryzias_melastigma
ENSCSEG00000011919	sbno1	100	75.490	ENSOARG00000004404	SBNO1	99	74.429	Ovis_aries
ENSCSEG00000011919	sbno1	95	83.183	ENSPPAG00000024635	SBNO1	99	83.183	Pan_paniscus
ENSCSEG00000011919	sbno1	99	75.596	ENSPPRG00000022092	SBNO1	99	74.596	Panthera_pardus
ENSCSEG00000011919	sbno1	99	75.668	ENSPTIG00000017803	SBNO1	99	74.684	Panthera_tigris_altaica
ENSCSEG00000011919	sbno1	95	83.183	ENSPTRG00000005597	SBNO1	99	83.183	Pan_troglodytes
ENSCSEG00000011919	sbno1	96	82.321	ENSPANG00000011640	SBNO1	99	82.585	Papio_anubis
ENSCSEG00000011919	sbno1	100	79.491	ENSPKIG00000001441	sbno1	100	79.293	Paramormyrops_kingsleyae
ENSCSEG00000011919	sbno1	98	75.216	ENSPSIG00000009572	-	99	74.203	Pelodiscus_sinensis
ENSCSEG00000011919	sbno1	92	72.188	ENSPSIG00000009256	-	99	71.516	Pelodiscus_sinensis
ENSCSEG00000011919	sbno1	96	81.640	ENSPEMG00000016087	Sbno1	99	82.491	Peromyscus_maniculatus_bairdii
ENSCSEG00000011919	sbno1	99	74.982	ENSPCIG00000010985	SBNO1	99	74.420	Phascolarctos_cinereus
ENSCSEG00000011919	sbno1	100	88.122	ENSPFOG00000005069	sbno1	100	88.193	Poecilia_formosa
ENSCSEG00000011919	sbno1	100	88.122	ENSPLAG00000015015	sbno1	100	88.265	Poecilia_latipinna
ENSCSEG00000011919	sbno1	100	88.060	ENSPMEG00000021212	sbno1	100	88.131	Poecilia_mexicana
ENSCSEG00000011919	sbno1	100	87.562	ENSPREG00000017746	sbno1	100	87.633	Poecilia_reticulata
ENSCSEG00000011919	sbno1	99	75.070	ENSPPYG00000005084	SBNO1	99	74.631	Pongo_abelii
ENSCSEG00000011919	sbno1	88	68.792	ENSPCAG00000008634	SBNO1	87	68.759	Procavia_capensis
ENSCSEG00000011919	sbno1	95	83.060	ENSPCOG00000024277	SBNO1	99	83.060	Propithecus_coquereli
ENSCSEG00000011919	sbno1	87	83.101	ENSPVAG00000015304	SBNO1	87	83.101	Pteropus_vampyrus
ENSCSEG00000011919	sbno1	100	88.557	ENSPNYG00000004291	sbno1	100	88.415	Pundamilia_nyererei
ENSCSEG00000011919	sbno1	100	81.006	ENSPNAG00000015622	sbno1	100	80.156	Pygocentrus_nattereri
ENSCSEG00000011919	sbno1	96	81.818	ENSRNOG00000001064	Sbno1	99	82.821	Rattus_norvegicus
ENSCSEG00000011919	sbno1	96	82.321	ENSRROG00000034230	SBNO1	99	82.585	Rhinopithecus_roxellana
ENSCSEG00000011919	sbno1	97	72.987	ENSSBOG00000015422	SBNO1	99	73.109	Saimiri_boliviensis_boliviensis
ENSCSEG00000011919	sbno1	100	79.901	ENSSFOG00015019025	sbno1	100	79.831	Scleropages_formosus
ENSCSEG00000011919	sbno1	100	91.453	ENSSMAG00000013640	sbno1	100	91.453	Scophthalmus_maximus
ENSCSEG00000011919	sbno1	100	92.740	ENSSDUG00000023480	sbno1	100	92.740	Seriola_dumerili
ENSCSEG00000011919	sbno1	100	92.456	ENSSLDG00000007928	sbno1	100	92.456	Seriola_lalandi_dorsalis
ENSCSEG00000011919	sbno1	89	80.837	ENSSARG00000002594	SBNO1	89	80.161	Sorex_araneus
ENSCSEG00000011919	sbno1	98	75.270	ENSSPUG00000012640	SBNO1	99	74.324	Sphenodon_punctatus
ENSCSEG00000011919	sbno1	100	90.618	ENSSPAG00000016244	sbno1	100	90.618	Stegastes_partitus
ENSCSEG00000011919	sbno1	99	75.193	ENSSSCG00000009776	SBNO1	99	74.392	Sus_scrofa
ENSCSEG00000011919	sbno1	98	75.447	ENSTGUG00000005380	SBNO1	99	74.718	Taeniopygia_guttata
ENSCSEG00000011919	sbno1	99	85.999	ENSTRUG00000018490	sbno1	99	86.354	Takifugu_rubripes
ENSCSEG00000011919	sbno1	57	83.021	ENSTNIG00000013506	sbno1	99	83.040	Tetraodon_nigroviridis
ENSCSEG00000011919	sbno1	99	75.579	ENSUAMG00000019671	SBNO1	99	74.596	Ursus_americanus
ENSCSEG00000011919	sbno1	99	75.579	ENSUMAG00000004002	SBNO1	99	74.596	Ursus_maritimus
ENSCSEG00000011919	sbno1	95	71.005	ENSVPAG00000007024	SBNO1	95	70.297	Vicugna_pacos
ENSCSEG00000011919	sbno1	99	75.509	ENSVVUG00000027807	SBNO1	99	74.526	Vulpes_vulpes
ENSCSEG00000011919	sbno1	91	81.507	ENSXETG00000031930	SBNO1	99	71.288	Xenopus_tropicalis
ENSCSEG00000011919	sbno1	88	86.656	ENSXCOG00000011607	sbno1	99	84.086	Xiphophorus_couchianus
ENSCSEG00000011919	sbno1	100	88.060	ENSXMAG00000002140	sbno1	100	88.131	Xiphophorus_maculatus