EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012377 (Gene tree)
Gene ID: 103391063
Gene Symbol: NCBP1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 9744 bases
Position: chr15:12102224-12111967
Accession: 103391063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000019380	MIF4G_like	PF09088.11	3.5e-37	1	1
ENSCSEP00000019422	MIF4G_like	PF09088.11	3.5e-37	1	1
ENSCSEP00000019395	MIF4G_like	PF09088.11	1.1e-31	1	2
ENSCSEP00000019395	MIF4G_like	PF09088.11	1.1e-31	2	2
ENSCSEP00000019380	MIF4G_like_2	PF09090.11	6.6e-86	1	1
ENSCSEP00000019422	MIF4G_like_2	PF09090.11	1.5e-85	1	1
ENSCSEP00000019395	MIF4G_like_2	PF09090.11	1.6e-85	1	1
ENSCSEP00000019422	MIF4G	PF02854.19	4.3e-27	1	1
ENSCSEP00000019395	MIF4G	PF02854.19	4.6e-27	1	1
ENSCSEP00000019380	MIF4G	PF02854.19	4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000019661	NCBP1-203	2388	XM_008327186	ENSCSEP00000019422	795 (aa)	XP_008325408	UPI0004952C78
ENSCSET00000019634	NCBP1-202	2469	-	ENSCSEP00000019395	822 (aa)	-	-
ENSCSET00000019619	NCBP1-201	2154	-	ENSCSEP00000019380	717 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000012377's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012377's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012377	NCBP1	99	83.077	ENSG00000136937	NCBP1	99	82.746	Homo_sapiens
ENSCSEG00000012377	NCBP1	100	96.604	ENSAPOG00000008002	NCBP1	100	96.604	Acanthochromis_polyacanthus
ENSCSEG00000012377	NCBP1	99	83.357	ENSAMEG00000004763	NCBP1	99	82.789	Ailuropoda_melanoleuca
ENSCSEG00000012377	NCBP1	100	96.101	ENSACIG00000000274	NCBP1	100	96.101	Amphilophus_citrinellus
ENSCSEG00000012377	NCBP1	100	96.226	ENSAOCG00000021148	NCBP1	100	96.226	Amphiprion_ocellaris
ENSCSEG00000012377	NCBP1	100	96.226	ENSAPEG00000001701	NCBP1	100	96.226	Amphiprion_percula
ENSCSEG00000012377	NCBP1	100	96.730	ENSATEG00000006929	NCBP1	100	96.730	Anabas_testudineus
ENSCSEG00000012377	NCBP1	99	82.964	ENSAPLG00000016318	NCBP1	99	83.553	Anas_platyrhynchos
ENSCSEG00000012377	NCBP1	99	83.000	ENSACAG00000004409	NCBP1	87	83.521	Anolis_carolinensis
ENSCSEG00000012377	NCBP1	99	83.077	ENSANAG00000025744	NCBP1	99	82.687	Aotus_nancymaae
ENSCSEG00000012377	NCBP1	100	95.472	ENSACLG00000014812	NCBP1	100	95.472	Astatotilapia_calliptera
ENSCSEG00000012377	NCBP1	100	90.590	ENSAMXG00000016364	NCBP1	100	90.590	Astyanax_mexicanus
ENSCSEG00000012377	NCBP1	99	83.217	ENSBTAG00000009732	NCBP1	99	87.613	Bos_taurus
ENSCSEG00000012377	NCBP1	100	36.654	WBGene00018156	ncbp-1	100	36.654	Caenorhabditis_elegans
ENSCSEG00000012377	NCBP1	99	83.217	ENSCJAG00000010840	NCBP1	99	86.190	Callithrix_jacchus
ENSCSEG00000012377	NCBP1	99	83.357	ENSCAFG00000002445	NCBP1	99	82.997	Canis_familiaris
ENSCSEG00000012377	NCBP1	99	83.357	ENSCAFG00020017997	NCBP1	96	88.557	Canis_lupus_dingo
ENSCSEG00000012377	NCBP1	99	83.077	ENSCHIG00000020139	NCBP1	99	82.746	Capra_hircus
ENSCSEG00000012377	NCBP1	50	88.250	ENSTSYG00000011914	NCBP1	98	86.834	Carlito_syrichta
ENSCSEG00000012377	NCBP1	90	75.583	ENSCAPG00000014252	NCBP1	91	75.583	Cavia_aperea
ENSCSEG00000012377	NCBP1	99	82.797	ENSCPOG00000012573	NCBP1	98	82.166	Cavia_porcellus
ENSCSEG00000012377	NCBP1	99	83.077	ENSCCAG00000032297	NCBP1	99	82.746	Cebus_capucinus
ENSCSEG00000012377	NCBP1	99	83.077	ENSCATG00000010052	NCBP1	99	83.024	Cercocebus_atys
ENSCSEG00000012377	NCBP1	99	83.077	ENSCLAG00000014339	NCBP1	99	82.746	Chinchilla_lanigera
ENSCSEG00000012377	NCBP1	99	83.077	ENSCSAG00000010929	NCBP1	99	82.746	Chlorocebus_sabaeus
ENSCSEG00000012377	NCBP1	90	81.132	ENSCHOG00000010332	NCBP1	91	77.391	Choloepus_hoffmanni
ENSCSEG00000012377	NCBP1	99	83.310	ENSCPBG00000024344	NCBP1	99	83.884	Chrysemys_picta_bellii
ENSCSEG00000012377	NCBP1	99	53.652	ENSCING00000008990	-	99	53.652	Ciona_intestinalis
ENSCSEG00000012377	NCBP1	99	53.000	ENSCSAVG00000005300	-	99	54.124	Ciona_savignyi
ENSCSEG00000012377	NCBP1	99	83.077	ENSCANG00000036913	NCBP1	99	82.746	Colobus_angolensis_palliatus
ENSCSEG00000012377	NCBP1	99	82.797	ENSCGRG00001015771	Ncbp1	99	82.368	Cricetulus_griseus_chok1gshd
ENSCSEG00000012377	NCBP1	99	82.797	ENSCGRG00000010311	Ncbp1	99	82.270	Cricetulus_griseus_crigri
ENSCSEG00000012377	NCBP1	100	93.593	ENSCVAG00000008795	NCBP1	100	93.593	Cyprinodon_variegatus
ENSCSEG00000012377	NCBP1	99	82.238	ENSDNOG00000006885	NCBP1	99	81.990	Dasypus_novemcinctus
ENSCSEG00000012377	NCBP1	99	82.427	ENSDORG00000013652	Ncbp1	99	78.697	Dipodomys_ordii
ENSCSEG00000012377	NCBP1	99	58.073	FBgn0022942	Cbp80	99	58.073	Drosophila_melanogaster
ENSCSEG00000012377	NCBP1	83	34.315	FBgn0038887	CG7907	87	34.315	Drosophila_melanogaster
ENSCSEG00000012377	NCBP1	89	78.355	ENSETEG00000009705	NCBP1	89	78.355	Echinops_telfairi
ENSCSEG00000012377	NCBP1	99	73.585	ENSEBUG00000008386	NCBP1	99	73.585	Eptatretus_burgeri
ENSCSEG00000012377	NCBP1	99	83.077	ENSEASG00005022795	NCBP1	99	82.746	Equus_asinus_asinus
ENSCSEG00000012377	NCBP1	99	83.217	ENSECAG00000013847	NCBP1	99	82.872	Equus_caballus
ENSCSEG00000012377	NCBP1	95	78.732	ENSEEUG00000015973	NCBP1	99	78.864	Erinaceus_europaeus
ENSCSEG00000012377	NCBP1	100	91.457	ENSELUG00000022519	NCBP1	100	91.457	Esox_lucius
ENSCSEG00000012377	NCBP1	99	83.217	ENSFCAG00000001206	NCBP1	99	82.872	Felis_catus
ENSCSEG00000012377	NCBP1	99	82.849	ENSFALG00000001193	NCBP1	99	84.478	Ficedula_albicollis
ENSCSEG00000012377	NCBP1	99	82.937	ENSFDAG00000010864	NCBP1	99	82.620	Fukomys_damarensis
ENSCSEG00000012377	NCBP1	100	93.844	ENSFHEG00000000655	NCBP1	100	93.844	Fundulus_heteroclitus
ENSCSEG00000012377	NCBP1	100	91.206	ENSGMOG00000008653	NCBP1	99	91.206	Gadus_morhua
ENSCSEG00000012377	NCBP1	99	83.520	ENSGALG00000002087	NCBP1	99	84.045	Gallus_gallus
ENSCSEG00000012377	NCBP1	100	95.101	ENSGAFG00000017787	NCBP1	100	95.101	Gambusia_affinis
ENSCSEG00000012377	NCBP1	100	93.609	ENSGACG00000016772	NCBP1	99	93.609	Gasterosteus_aculeatus
ENSCSEG00000012377	NCBP1	99	83.753	ENSGAGG00000019483	NCBP1	99	84.277	Gopherus_agassizii
ENSCSEG00000012377	NCBP1	99	83.077	ENSGGOG00000001376	NCBP1	99	82.746	Gorilla_gorilla
ENSCSEG00000012377	NCBP1	100	95.472	ENSHBUG00000020843	NCBP1	100	95.472	Haplochromis_burtoni
ENSCSEG00000012377	NCBP1	99	72.111	ENSHGLG00000018112	-	99	72.111	Heterocephalus_glaber_female
ENSCSEG00000012377	NCBP1	99	82.937	ENSHGLG00000001882	NCBP1	99	82.620	Heterocephalus_glaber_female
ENSCSEG00000012377	NCBP1	99	82.937	ENSHGLG00100013014	NCBP1	99	82.620	Heterocephalus_glaber_male
ENSCSEG00000012377	NCBP1	99	71.859	ENSHGLG00100017373	-	99	71.859	Heterocephalus_glaber_male
ENSCSEG00000012377	NCBP1	82	86.341	ENSHCOG00000000204	NCBP1	87	87.352	Hippocampus_comes
ENSCSEG00000012377	NCBP1	100	89.698	ENSIPUG00000007275	ncbp1	100	89.698	Ictalurus_punctatus
ENSCSEG00000012377	NCBP1	99	83.217	ENSSTOG00000002695	NCBP1	99	82.872	Ictidomys_tridecemlineatus
ENSCSEG00000012377	NCBP1	100	94.843	ENSKMAG00000003594	NCBP1	99	96.545	Kryptolebias_marmoratus
ENSCSEG00000012377	NCBP1	100	93.052	ENSLBEG00000011661	NCBP1	100	93.052	Labrus_bergylta
ENSCSEG00000012377	NCBP1	99	78.207	ENSLACG00000013955	NCBP1	99	78.607	Latimeria_chalumnae
ENSCSEG00000012377	NCBP1	99	77.335	ENSLOCG00000009579	NCBP1	99	77.335	Lepisosteus_oculatus
ENSCSEG00000012377	NCBP1	99	83.077	ENSLAFG00000005999	NCBP1	99	82.746	Loxodonta_africana
ENSCSEG00000012377	NCBP1	99	83.077	ENSMFAG00000030994	NCBP1	99	83.024	Macaca_fascicularis
ENSCSEG00000012377	NCBP1	99	83.077	ENSMMUG00000012281	NCBP1	99	83.024	Macaca_mulatta
ENSCSEG00000012377	NCBP1	99	83.077	ENSMNEG00000042790	NCBP1	99	82.746	Macaca_nemestrina
ENSCSEG00000012377	NCBP1	99	83.077	ENSMLEG00000030374	NCBP1	99	82.746	Mandrillus_leucophaeus
ENSCSEG00000012377	NCBP1	100	95.346	ENSMAMG00000014806	NCBP1	100	95.346	Mastacembelus_armatus
ENSCSEG00000012377	NCBP1	100	95.472	ENSMZEG00005003469	NCBP1	100	95.472	Maylandia_zebra
ENSCSEG00000012377	NCBP1	99	93.978	ENSMZEG00005009290	-	100	93.411	Maylandia_zebra
ENSCSEG00000012377	NCBP1	99	82.797	ENSMAUG00000020583	Ncbp1	99	81.772	Mesocricetus_auratus
ENSCSEG00000012377	NCBP1	99	82.517	ENSMICG00000012682	NCBP1	99	82.242	Microcebus_murinus
ENSCSEG00000012377	NCBP1	99	82.657	ENSMOCG00000015818	Ncbp1	99	82.242	Microtus_ochrogaster
ENSCSEG00000012377	NCBP1	99	93.838	ENSMMOG00000002610	NCBP1	100	93.838	Mola_mola
ENSCSEG00000012377	NCBP1	99	82.468	ENSMODG00000003202	NCBP1	99	82.116	Monodelphis_domestica
ENSCSEG00000012377	NCBP1	100	96.226	ENSMALG00000003547	NCBP1	100	96.226	Monopterus_albus
ENSCSEG00000012377	NCBP1	99	82.937	MGP_CAROLIEiJ_G0025982	Ncbp1	99	82.494	Mus_caroli
ENSCSEG00000012377	NCBP1	99	82.937	ENSMUSG00000028330	Ncbp1	99	82.494	Mus_musculus
ENSCSEG00000012377	NCBP1	99	82.937	MGP_PahariEiJ_G0028318	Ncbp1	99	82.494	Mus_pahari
ENSCSEG00000012377	NCBP1	99	82.937	MGP_SPRETEiJ_G0026945	Ncbp1	99	82.494	Mus_spretus
ENSCSEG00000012377	NCBP1	99	83.497	ENSMPUG00000006399	NCBP1	99	83.123	Mustela_putorius_furo
ENSCSEG00000012377	NCBP1	99	82.657	ENSMLUG00000015201	NCBP1	99	81.865	Myotis_lucifugus
ENSCSEG00000012377	NCBP1	99	82.937	ENSNGAG00000014101	Ncbp1	99	82.620	Nannospalax_galili
ENSCSEG00000012377	NCBP1	78	98.238	ENSNBRG00000014674	NCBP1	98	98.238	Neolamprologus_brichardi
ENSCSEG00000012377	NCBP1	99	83.077	ENSNLEG00000016909	NCBP1	99	83.024	Nomascus_leucogenys
ENSCSEG00000012377	NCBP1	89	81.002	ENSMEUG00000010672	NCBP1	90	81.002	Notamacropus_eugenii
ENSCSEG00000012377	NCBP1	84	74.916	ENSOPRG00000002144	-	88	75.084	Ochotona_princeps
ENSCSEG00000012377	NCBP1	99	82.937	ENSODEG00000003232	NCBP1	99	82.620	Octodon_degus
ENSCSEG00000012377	NCBP1	100	95.723	ENSONIG00000001502	NCBP1	100	95.723	Oreochromis_niloticus
ENSCSEG00000012377	NCBP1	78	85.875	ENSOANG00000001918	NCBP1	100	85.875	Ornithorhynchus_anatinus
ENSCSEG00000012377	NCBP1	98	82.308	ENSOCUG00000013853	NCBP1	97	82.436	Oryctolagus_cuniculus
ENSCSEG00000012377	NCBP1	100	93.742	ENSORLG00000011008	NCBP1	100	93.742	Oryzias_latipes
ENSCSEG00000012377	NCBP1	100	93.742	ENSORLG00020017455	NCBP1	100	93.742	Oryzias_latipes_hni
ENSCSEG00000012377	NCBP1	100	93.617	ENSORLG00015012127	NCBP1	100	93.617	Oryzias_latipes_hsok
ENSCSEG00000012377	NCBP1	100	94.243	ENSOMEG00000020698	NCBP1	100	94.243	Oryzias_melastigma
ENSCSEG00000012377	NCBP1	99	83.217	ENSOGAG00000013888	NCBP1	99	82.663	Otolemur_garnettii
ENSCSEG00000012377	NCBP1	99	83.077	ENSOARG00000011233	NCBP1	99	82.746	Ovis_aries
ENSCSEG00000012377	NCBP1	99	83.077	ENSPPAG00000026462	NCBP1	99	82.746	Pan_paniscus
ENSCSEG00000012377	NCBP1	99	83.357	ENSPPRG00000022574	NCBP1	99	82.997	Panthera_pardus
ENSCSEG00000012377	NCBP1	99	83.357	ENSPTIG00000018507	NCBP1	99	82.997	Panthera_tigris_altaica
ENSCSEG00000012377	NCBP1	99	83.077	ENSPTRG00000021167	NCBP1	99	82.746	Pan_troglodytes
ENSCSEG00000012377	NCBP1	99	83.077	ENSPANG00000025591	NCBP1	99	83.024	Papio_anubis
ENSCSEG00000012377	NCBP1	99	87.028	ENSPKIG00000015861	NCBP1	99	87.028	Paramormyrops_kingsleyae
ENSCSEG00000012377	NCBP1	70	81.996	ENSPSIG00000009558	NCBP1	99	83.203	Pelodiscus_sinensis
ENSCSEG00000012377	NCBP1	100	89.850	ENSPMGG00000020476	NCBP1	100	89.850	Periophthalmus_magnuspinnatus
ENSCSEG00000012377	NCBP1	99	82.797	ENSPEMG00000020105	Ncbp1	99	82.116	Peromyscus_maniculatus_bairdii
ENSCSEG00000012377	NCBP1	99	67.521	ENSPMAG00000005533	NCBP1	99	67.521	Petromyzon_marinus
ENSCSEG00000012377	NCBP1	99	82.328	ENSPCIG00000015800	NCBP1	99	84.141	Phascolarctos_cinereus
ENSCSEG00000012377	NCBP1	100	94.493	ENSPFOG00000004158	NCBP1	100	94.493	Poecilia_formosa
ENSCSEG00000012377	NCBP1	100	94.849	ENSPLAG00000020002	NCBP1	100	94.849	Poecilia_latipinna
ENSCSEG00000012377	NCBP1	100	94.849	ENSPMEG00000019821	NCBP1	100	94.849	Poecilia_mexicana
ENSCSEG00000012377	NCBP1	100	94.730	ENSPREG00000006035	NCBP1	100	94.730	Poecilia_reticulata
ENSCSEG00000012377	NCBP1	99	83.077	ENSPPYG00000019426	NCBP1	99	82.746	Pongo_abelii
ENSCSEG00000012377	NCBP1	88	88.327	ENSPCAG00000009943	NCBP1	90	80.363	Procavia_capensis
ENSCSEG00000012377	NCBP1	89	87.500	ENSPCOG00000020024	NCBP1	98	87.500	Propithecus_coquereli
ENSCSEG00000012377	NCBP1	99	82.937	ENSPVAG00000005924	NCBP1	99	82.620	Pteropus_vampyrus
ENSCSEG00000012377	NCBP1	99	95.091	ENSPNYG00000002140	NCBP1	99	95.091	Pundamilia_nyererei
ENSCSEG00000012377	NCBP1	100	89.962	ENSPNAG00000027753	NCBP1	100	89.962	Pygocentrus_nattereri
ENSCSEG00000012377	NCBP1	99	82.937	ENSRNOG00000023605	Ncbp1	99	82.494	Rattus_norvegicus
ENSCSEG00000012377	NCBP1	99	83.077	ENSRBIG00000043175	NCBP1	99	83.024	Rhinopithecus_bieti
ENSCSEG00000012377	NCBP1	99	83.077	ENSRROG00000029767	NCBP1	99	82.746	Rhinopithecus_roxellana
ENSCSEG00000012377	NCBP1	99	83.077	ENSSBOG00000019378	NCBP1	98	87.317	Saimiri_boliviensis_boliviensis
ENSCSEG00000012377	NCBP1	70	78.244	ENSSHAG00000015882	NCBP1	73	79.771	Sarcophilus_harrisii
ENSCSEG00000012377	NCBP1	99	86.134	ENSSFOG00015001872	NCBP1	99	85.894	Scleropages_formosus
ENSCSEG00000012377	NCBP1	100	94.214	ENSSMAG00000007463	NCBP1	100	94.214	Scophthalmus_maximus
ENSCSEG00000012377	NCBP1	100	95.220	ENSSDUG00000007019	NCBP1	100	95.885	Seriola_dumerili
ENSCSEG00000012377	NCBP1	100	96.101	ENSSLDG00000021924	NCBP1	100	96.101	Seriola_lalandi_dorsalis
ENSCSEG00000012377	NCBP1	77	85.000	ENSSARG00000007274	NCBP1	86	72.078	Sorex_araneus
ENSCSEG00000012377	NCBP1	99	77.834	ENSSPUG00000008609	NCBP1	99	78.212	Sphenodon_punctatus
ENSCSEG00000012377	NCBP1	100	97.484	ENSSPAG00000012550	NCBP1	100	97.484	Stegastes_partitus
ENSCSEG00000012377	NCBP1	99	83.357	ENSSSCG00000005366	NCBP1	99	82.997	Sus_scrofa
ENSCSEG00000012377	NCBP1	99	78.715	ENSTGUG00000001472	NCBP1	99	79.623	Taeniopygia_guttata
ENSCSEG00000012377	NCBP1	100	93.962	ENSTRUG00000005287	NCBP1	100	93.962	Takifugu_rubripes
ENSCSEG00000012377	NCBP1	99	80.280	ENSTBEG00000004035	NCBP1	99	80.227	Tupaia_belangeri
ENSCSEG00000012377	NCBP1	86	87.597	ENSTTRG00000000507	NCBP1	88	85.222	Tursiops_truncatus
ENSCSEG00000012377	NCBP1	99	83.217	ENSUAMG00000005471	NCBP1	99	82.872	Ursus_americanus
ENSCSEG00000012377	NCBP1	99	81.259	ENSUMAG00000011865	NCBP1	99	82.845	Ursus_maritimus
ENSCSEG00000012377	NCBP1	99	83.333	ENSVPAG00000010537	NCBP1	99	79.345	Vicugna_pacos
ENSCSEG00000012377	NCBP1	99	83.357	ENSVVUG00000019725	NCBP1	99	82.997	Vulpes_vulpes
ENSCSEG00000012377	NCBP1	99	78.967	ENSXETG00000010179	ncbp1	99	78.967	Xenopus_tropicalis
ENSCSEG00000012377	NCBP1	100	94.849	ENSXMAG00000018253	NCBP1	100	94.849	Xiphophorus_maculatus