EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012392 (Gene tree)
Gene ID: 103381782
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 7085 bases
Position: chr1:16640442-16647526
Accession: 103381782
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000019391	SRP54	PF00448.22	2.9e-77	1	1
ENSCSEP00000019415	SRP54	PF00448.22	3.3e-77	1	1
ENSCSEP00000019391	SRP54_N	PF02881.19	4.5e-20	1	1
ENSCSEP00000019415	SRP54_N	PF02881.19	5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000019630	-	4617	XM_008314311	ENSCSEP00000019391	504 (aa)	XP_008312533	UPI00049645F7
ENSCSET00000019654	-	1911	-	ENSCSEP00000019415	526 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000012392's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012392's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012392	srp54	100	95.040	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSCSEG00000012392	srp54	100	99.008	ENSAPOG00000011314	srp54	100	99.008	Acanthochromis_polyacanthus
ENSCSEG00000012392	srp54	100	95.040	ENSAMEG00000015544	SRP54	100	95.040	Ailuropoda_melanoleuca
ENSCSEG00000012392	srp54	89	97.550	ENSACIG00000022831	srp54	97	97.550	Amphilophus_citrinellus
ENSCSEG00000012392	srp54	100	99.008	ENSAOCG00000019401	srp54	100	99.008	Amphiprion_ocellaris
ENSCSEG00000012392	srp54	100	99.008	ENSAPEG00000001977	srp54	100	99.008	Amphiprion_percula
ENSCSEG00000012392	srp54	100	98.611	ENSATEG00000013877	srp54	100	98.611	Anabas_testudineus
ENSCSEG00000012392	srp54	94	94.515	ENSAPLG00000010125	SRP54	95	94.515	Anas_platyrhynchos
ENSCSEG00000012392	srp54	65	78.852	ENSACAG00000001124	-	100	78.852	Anolis_carolinensis
ENSCSEG00000012392	srp54	86	91.244	ENSACAG00000010631	-	100	91.244	Anolis_carolinensis
ENSCSEG00000012392	srp54	100	94.444	ENSACAG00000002103	-	100	94.444	Anolis_carolinensis
ENSCSEG00000012392	srp54	100	95.040	ENSANAG00000022133	SRP54	100	95.040	Aotus_nancymaae
ENSCSEG00000012392	srp54	100	98.810	ENSACLG00000015866	srp54	100	98.810	Astatotilapia_calliptera
ENSCSEG00000012392	srp54	100	96.825	ENSAMXG00000032669	SRP54	100	96.825	Astyanax_mexicanus
ENSCSEG00000012392	srp54	100	95.040	ENSBTAG00000019085	SRP54	100	95.040	Bos_taurus
ENSCSEG00000012392	srp54	98	72.490	WBGene00009012	F21D5.7	100	72.490	Caenorhabditis_elegans
ENSCSEG00000012392	srp54	100	95.040	ENSCJAG00000006581	SRP54	100	95.040	Callithrix_jacchus
ENSCSEG00000012392	srp54	100	95.040	ENSCAFG00000013331	SRP54	100	95.040	Canis_familiaris
ENSCSEG00000012392	srp54	100	95.040	ENSCAFG00020023427	SRP54	100	95.040	Canis_lupus_dingo
ENSCSEG00000012392	srp54	100	95.040	ENSCHIG00000026345	SRP54	100	95.040	Capra_hircus
ENSCSEG00000012392	srp54	100	94.841	ENSTSYG00000002680	-	100	94.841	Carlito_syrichta
ENSCSEG00000012392	srp54	95	83.054	ENSTSYG00000035333	-	94	83.054	Carlito_syrichta
ENSCSEG00000012392	srp54	94	61.224	ENSCAPG00000008780	SRP54	100	61.224	Cavia_aperea
ENSCSEG00000012392	srp54	100	94.643	ENSCPOG00000003691	SRP54	100	94.643	Cavia_porcellus
ENSCSEG00000012392	srp54	90	94.286	ENSCCAG00000024179	SRP54	100	94.511	Cebus_capucinus
ENSCSEG00000012392	srp54	100	95.040	ENSCATG00000034083	SRP54	100	95.040	Cercocebus_atys
ENSCSEG00000012392	srp54	100	95.040	ENSCLAG00000015076	SRP54	100	95.040	Chinchilla_lanigera
ENSCSEG00000012392	srp54	100	95.040	ENSCSAG00000015575	SRP54	100	95.040	Chlorocebus_sabaeus
ENSCSEG00000012392	srp54	95	84.200	ENSCHOG00000008986	SRP54	100	84.200	Choloepus_hoffmanni
ENSCSEG00000012392	srp54	100	95.040	ENSCPBG00000026195	SRP54	100	95.040	Chrysemys_picta_bellii
ENSCSEG00000012392	srp54	97	83.503	ENSCING00000007380	-	98	83.503	Ciona_intestinalis
ENSCSEG00000012392	srp54	100	95.040	ENSCANG00000028532	SRP54	100	95.040	Colobus_angolensis_palliatus
ENSCSEG00000012392	srp54	100	95.040	ENSCGRG00001009525	-	100	95.040	Cricetulus_griseus_chok1gshd
ENSCSEG00000012392	srp54	76	95.325	ENSCGRG00000009453	-	89	95.325	Cricetulus_griseus_crigri
ENSCSEG00000012392	srp54	100	98.611	ENSCVAG00000010395	srp54	100	98.611	Cyprinodon_variegatus
ENSCSEG00000012392	srp54	100	97.619	ENSDARG00000098367	srp54	100	97.619	Danio_rerio
ENSCSEG00000012392	srp54	100	95.040	ENSDNOG00000032525	SRP54	100	95.040	Dasypus_novemcinctus
ENSCSEG00000012392	srp54	89	80.088	ENSDORG00000005159	-	98	80.088	Dipodomys_ordii
ENSCSEG00000012392	srp54	96	78.763	FBgn0010747	Srp54k	98	78.313	Drosophila_melanogaster
ENSCSEG00000012392	srp54	83	55.024	ENSETEG00000012102	-	99	55.024	Echinops_telfairi
ENSCSEG00000012392	srp54	100	93.849	ENSETEG00000016307	-	100	93.849	Echinops_telfairi
ENSCSEG00000012392	srp54	100	88.095	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSCSEG00000012392	srp54	100	95.040	ENSEASG00005002057	SRP54	100	95.040	Equus_asinus_asinus
ENSCSEG00000012392	srp54	99	94.980	ENSECAG00000018042	SRP54	98	94.980	Equus_caballus
ENSCSEG00000012392	srp54	100	79.563	ENSEEUG00000001511	SRP54	100	79.563	Erinaceus_europaeus
ENSCSEG00000012392	srp54	100	97.421	ENSELUG00000003395	srp54	100	97.421	Esox_lucius
ENSCSEG00000012392	srp54	100	94.841	ENSFCAG00000032033	SRP54	100	94.841	Felis_catus
ENSCSEG00000012392	srp54	100	94.643	ENSFALG00000005995	SRP54	100	94.643	Ficedula_albicollis
ENSCSEG00000012392	srp54	100	95.040	ENSFDAG00000016767	SRP54	100	95.040	Fukomys_damarensis
ENSCSEG00000012392	srp54	100	98.611	ENSFHEG00000004263	srp54	100	98.611	Fundulus_heteroclitus
ENSCSEG00000012392	srp54	95	92.259	ENSGMOG00000011391	srp54	100	92.259	Gadus_morhua
ENSCSEG00000012392	srp54	100	94.643	ENSGALG00000023135	SRP54	100	94.643	Gallus_gallus
ENSCSEG00000012392	srp54	100	98.810	ENSGAFG00000011586	srp54	100	98.810	Gambusia_affinis
ENSCSEG00000012392	srp54	100	98.214	ENSGACG00000004181	srp54	100	98.214	Gasterosteus_aculeatus
ENSCSEG00000012392	srp54	100	95.040	ENSGAGG00000014766	SRP54	100	95.040	Gopherus_agassizii
ENSCSEG00000012392	srp54	100	95.040	ENSGGOG00000002926	SRP54	100	95.040	Gorilla_gorilla
ENSCSEG00000012392	srp54	100	98.810	ENSHBUG00000005678	srp54	100	98.810	Haplochromis_burtoni
ENSCSEG00000012392	srp54	100	95.040	ENSHGLG00000002850	SRP54	100	95.040	Heterocephalus_glaber_female
ENSCSEG00000012392	srp54	100	66.337	ENSHGLG00100007281	-	100	66.337	Heterocephalus_glaber_male
ENSCSEG00000012392	srp54	100	95.040	ENSHGLG00100005263	SRP54	100	95.040	Heterocephalus_glaber_male
ENSCSEG00000012392	srp54	100	96.825	ENSHCOG00000021127	srp54	100	96.825	Hippocampus_comes
ENSCSEG00000012392	srp54	100	96.825	ENSIPUG00000001420	srp54	100	96.825	Ictalurus_punctatus
ENSCSEG00000012392	srp54	100	95.040	ENSSTOG00000016023	SRP54	100	95.040	Ictidomys_tridecemlineatus
ENSCSEG00000012392	srp54	100	90.278	ENSJJAG00000013417	-	100	90.278	Jaculus_jaculus
ENSCSEG00000012392	srp54	87	73.409	ENSJJAG00000016404	-	100	73.409	Jaculus_jaculus
ENSCSEG00000012392	srp54	100	98.214	ENSKMAG00000007707	srp54	100	98.214	Kryptolebias_marmoratus
ENSCSEG00000012392	srp54	100	99.008	ENSLBEG00000018690	srp54	100	99.008	Labrus_bergylta
ENSCSEG00000012392	srp54	100	99.008	ENSLBEG00000021122	srp54	100	99.008	Labrus_bergylta
ENSCSEG00000012392	srp54	100	95.040	ENSLACG00000017890	SRP54	100	95.040	Latimeria_chalumnae
ENSCSEG00000012392	srp54	100	97.222	ENSLOCG00000009440	srp54	100	97.222	Lepisosteus_oculatus
ENSCSEG00000012392	srp54	100	95.040	ENSLAFG00000012007	SRP54	100	95.040	Loxodonta_africana
ENSCSEG00000012392	srp54	100	95.040	ENSMFAG00000044371	SRP54	100	95.040	Macaca_fascicularis
ENSCSEG00000012392	srp54	100	95.040	ENSMMUG00000015073	FAM177A1	100	95.040	Macaca_mulatta
ENSCSEG00000012392	srp54	100	95.040	ENSMNEG00000006947	SRP54	100	95.040	Macaca_nemestrina
ENSCSEG00000012392	srp54	100	95.040	ENSMLEG00000042251	SRP54	100	95.040	Mandrillus_leucophaeus
ENSCSEG00000012392	srp54	100	98.810	ENSMAMG00000004803	srp54	100	98.810	Mastacembelus_armatus
ENSCSEG00000012392	srp54	100	98.810	ENSMZEG00005027528	srp54	100	98.810	Maylandia_zebra
ENSCSEG00000012392	srp54	100	90.119	ENSMGAG00000012481	SRP54	100	90.119	Meleagris_gallopavo
ENSCSEG00000012392	srp54	100	95.238	ENSMAUG00000014447	-	100	95.238	Mesocricetus_auratus
ENSCSEG00000012392	srp54	100	95.040	ENSMICG00000010270	SRP54	100	95.040	Microcebus_murinus
ENSCSEG00000012392	srp54	87	94.773	ENSMOCG00000000948	-	100	94.773	Microtus_ochrogaster
ENSCSEG00000012392	srp54	90	96.476	ENSMMOG00000020303	srp54	99	96.476	Mola_mola
ENSCSEG00000012392	srp54	100	95.040	ENSMODG00000012925	-	100	95.040	Monodelphis_domestica
ENSCSEG00000012392	srp54	100	95.040	ENSMODG00000023150	-	100	95.040	Monodelphis_domestica
ENSCSEG00000012392	srp54	88	98.871	ENSMALG00000009163	srp54	98	98.871	Monopterus_albus
ENSCSEG00000012392	srp54	100	95.238	MGP_CAROLIEiJ_G0017754	-	100	95.238	Mus_caroli
ENSCSEG00000012392	srp54	100	95.238	ENSMUSG00000073079	Srp54a	100	97.273	Mus_musculus
ENSCSEG00000012392	srp54	100	95.238	ENSMUSG00000112449	Srp54b	100	95.238	Mus_musculus
ENSCSEG00000012392	srp54	100	94.444	ENSMUSG00000079108	Srp54c	100	94.444	Mus_musculus
ENSCSEG00000012392	srp54	100	95.238	MGP_PahariEiJ_G0029510	-	100	95.238	Mus_pahari
ENSCSEG00000012392	srp54	100	95.040	ENSMPUG00000016302	SRP54	100	95.040	Mustela_putorius_furo
ENSCSEG00000012392	srp54	100	94.444	ENSMLUG00000008958	SRP54	100	94.444	Myotis_lucifugus
ENSCSEG00000012392	srp54	100	85.913	ENSNGAG00000019806	-	100	85.913	Nannospalax_galili
ENSCSEG00000012392	srp54	87	98.636	ENSNBRG00000006000	srp54	100	98.636	Neolamprologus_brichardi
ENSCSEG00000012392	srp54	100	95.040	ENSNLEG00000003496	SRP54	100	95.040	Nomascus_leucogenys
ENSCSEG00000012392	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSCSEG00000012392	srp54	58	95.082	ENSOPRG00000014502	-	60	95.082	Ochotona_princeps
ENSCSEG00000012392	srp54	100	95.040	ENSODEG00000004865	SRP54	100	95.040	Octodon_degus
ENSCSEG00000012392	srp54	100	98.810	ENSONIG00000011768	srp54	100	98.810	Oreochromis_niloticus
ENSCSEG00000012392	srp54	100	95.040	ENSOANG00000014051	SRP54	100	95.040	Ornithorhynchus_anatinus
ENSCSEG00000012392	srp54	100	94.444	ENSOCUG00000007838	SRP54	100	94.444	Oryctolagus_cuniculus
ENSCSEG00000012392	srp54	100	98.611	ENSORLG00000010027	srp54	100	98.611	Oryzias_latipes
ENSCSEG00000012392	srp54	100	98.611	ENSORLG00020001878	srp54	100	98.611	Oryzias_latipes_hni
ENSCSEG00000012392	srp54	100	98.611	ENSORLG00015021866	srp54	100	98.611	Oryzias_latipes_hsok
ENSCSEG00000012392	srp54	100	98.413	ENSOMEG00000020952	srp54	100	98.413	Oryzias_melastigma
ENSCSEG00000012392	srp54	100	95.040	ENSOGAG00000012188	SRP54	100	95.040	Otolemur_garnettii
ENSCSEG00000012392	srp54	100	95.040	ENSOARG00000007160	SRP54	100	95.040	Ovis_aries
ENSCSEG00000012392	srp54	100	95.040	ENSPPAG00000017434	SRP54	100	95.040	Pan_paniscus
ENSCSEG00000012392	srp54	100	94.048	ENSPPRG00000014047	SRP54	100	94.048	Panthera_pardus
ENSCSEG00000012392	srp54	100	94.841	ENSPTIG00000000744	SRP54	96	94.841	Panthera_tigris_altaica
ENSCSEG00000012392	srp54	100	95.040	ENSPTRG00000006259	FAM177A1	100	95.040	Pan_troglodytes
ENSCSEG00000012392	srp54	100	95.040	ENSPANG00000023853	SRP54	100	95.040	Papio_anubis
ENSCSEG00000012392	srp54	100	97.222	ENSPKIG00000001953	srp54	100	97.222	Paramormyrops_kingsleyae
ENSCSEG00000012392	srp54	100	94.841	ENSPSIG00000006476	SRP54	100	94.841	Pelodiscus_sinensis
ENSCSEG00000012392	srp54	91	95.652	ENSPMGG00000004127	srp54	99	95.652	Periophthalmus_magnuspinnatus
ENSCSEG00000012392	srp54	100	83.333	ENSPEMG00000019634	-	100	83.333	Peromyscus_maniculatus_bairdii
ENSCSEG00000012392	srp54	100	89.881	ENSPMAG00000006078	-	100	89.881	Petromyzon_marinus
ENSCSEG00000012392	srp54	100	95.040	ENSPCIG00000016175	SRP54	100	95.040	Phascolarctos_cinereus
ENSCSEG00000012392	srp54	100	98.810	ENSPFOG00000008870	srp54	100	98.810	Poecilia_formosa
ENSCSEG00000012392	srp54	100	98.810	ENSPLAG00000009889	srp54	100	98.810	Poecilia_latipinna
ENSCSEG00000012392	srp54	100	98.810	ENSPMEG00000008601	srp54	100	98.810	Poecilia_mexicana
ENSCSEG00000012392	srp54	100	98.810	ENSPREG00000004505	srp54	100	98.810	Poecilia_reticulata
ENSCSEG00000012392	srp54	100	90.079	ENSPPYG00000005739	SRP54	100	90.079	Pongo_abelii
ENSCSEG00000012392	srp54	100	91.468	ENSPCAG00000006268	SRP54	100	91.468	Procavia_capensis
ENSCSEG00000012392	srp54	100	93.069	ENSPCOG00000022473	SRP54	100	93.069	Propithecus_coquereli
ENSCSEG00000012392	srp54	63	97.872	ENSPVAG00000010056	SRP54	82	97.872	Pteropus_vampyrus
ENSCSEG00000012392	srp54	100	98.810	ENSPNYG00000009717	srp54	100	98.810	Pundamilia_nyererei
ENSCSEG00000012392	srp54	100	97.024	ENSPNAG00000008544	srp54	100	97.024	Pygocentrus_nattereri
ENSCSEG00000012392	srp54	100	95.040	ENSRNOG00000032776	Srp54a	100	95.040	Rattus_norvegicus
ENSCSEG00000012392	srp54	100	95.040	ENSRROG00000041292	SRP54	100	95.040	Rhinopithecus_roxellana
ENSCSEG00000012392	srp54	86	51.701	YPR088C	SRP54	95	47.308	Saccharomyces_cerevisiae
ENSCSEG00000012392	srp54	94	94.726	ENSSBOG00000035145	SRP54	100	94.726	Saimiri_boliviensis_boliviensis
ENSCSEG00000012392	srp54	68	93.878	ENSSHAG00000000671	SRP54	100	93.878	Sarcophilus_harrisii
ENSCSEG00000012392	srp54	100	97.619	ENSSFOG00015013920	srp54	100	97.619	Scleropages_formosus
ENSCSEG00000012392	srp54	100	93.071	ENSSMAG00000002441	srp54	100	93.071	Scophthalmus_maximus
ENSCSEG00000012392	srp54	100	98.810	ENSSDUG00000018586	srp54	100	98.810	Seriola_dumerili
ENSCSEG00000012392	srp54	100	99.008	ENSSLDG00000010476	srp54	100	99.008	Seriola_lalandi_dorsalis
ENSCSEG00000012392	srp54	100	95.040	ENSSARG00000002744	SRP54	100	95.040	Sorex_araneus
ENSCSEG00000012392	srp54	100	95.040	ENSSPUG00000013101	SRP54	100	95.040	Sphenodon_punctatus
ENSCSEG00000012392	srp54	100	99.008	ENSSPAG00000002354	srp54	100	99.008	Stegastes_partitus
ENSCSEG00000012392	srp54	100	95.040	ENSSSCG00000001955	SRP54	100	95.040	Sus_scrofa
ENSCSEG00000012392	srp54	94	94.515	ENSTGUG00000011945	-	95	94.515	Taeniopygia_guttata
ENSCSEG00000012392	srp54	100	98.016	ENSTRUG00000007057	srp54	100	98.016	Takifugu_rubripes
ENSCSEG00000012392	srp54	100	97.222	ENSTNIG00000002589	srp54	100	97.222	Tetraodon_nigroviridis
ENSCSEG00000012392	srp54	89	86.353	ENSTBEG00000011409	SRP54	100	86.353	Tupaia_belangeri
ENSCSEG00000012392	srp54	100	85.913	ENSTTRG00000000928	SRP54	100	85.913	Tursiops_truncatus
ENSCSEG00000012392	srp54	52	95.802	ENSUAMG00000012385	SRP54	100	95.802	Ursus_americanus
ENSCSEG00000012392	srp54	100	95.040	ENSUMAG00000011234	SRP54	100	95.040	Ursus_maritimus
ENSCSEG00000012392	srp54	94	94.726	ENSVPAG00000005668	SRP54	100	94.726	Vicugna_pacos
ENSCSEG00000012392	srp54	100	95.040	ENSVVUG00000019962	SRP54	100	95.040	Vulpes_vulpes
ENSCSEG00000012392	srp54	100	80.392	ENSXETG00000012290	srp54	100	80.859	Xenopus_tropicalis
ENSCSEG00000012392	srp54	88	98.871	ENSXCOG00000004658	srp54	96	98.871	Xiphophorus_couchianus
ENSCSEG00000012392	srp54	100	98.810	ENSXMAG00000018315	srp54	100	98.810	Xiphophorus_maculatus