EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012499 (Gene tree)
Gene ID: 103398637
Gene Symbol: ddb1
Alias: zgc:63840
Full Name: damage specific DNA binding protein 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 33784 bases
Position: chrKI934275.1:140016-173799
Accession: 103398637
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000019584	CPSF_A	PF03178.15	2e-72	1	1
ENSCSEP00000019613	CPSF_A	PF03178.15	1.3e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000019823	-	7006	XM_008337308	ENSCSEP00000019584	1137 (aa)	XP_008335530	-
ENSCSET00000019852	-	2970	-	ENSCSEP00000019613	989 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000012499's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03420	Nucleotide excision repair	KEGG
csem04120	Ubiquitin mediated proteolysis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012499's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012499	ddb1	99	89.575	ENSG00000167986	DDB1	100	94.521	Homo_sapiens
ENSCSEG00000012499	ddb1	100	96.866	ENSAPOG00000005036	ddb1	99	98.469	Acanthochromis_polyacanthus
ENSCSEG00000012499	ddb1	99	89.676	ENSAMEG00000016518	DDB1	93	91.235	Ailuropoda_melanoleuca
ENSCSEG00000012499	ddb1	100	96.562	ENSACIG00000020624	ddb1	99	98.163	Amphilophus_citrinellus
ENSCSEG00000012499	ddb1	99	96.964	ENSAOCG00000003066	ddb1	93	98.680	Amphiprion_ocellaris
ENSCSEG00000012499	ddb1	99	96.964	ENSAPEG00000000092	ddb1	98	98.680	Amphiprion_percula
ENSCSEG00000012499	ddb1	99	96.862	ENSATEG00000020571	ddb1	96	98.586	Anabas_testudineus
ENSCSEG00000012499	ddb1	99	88.103	ENSAPLG00000007174	DDB1	92	89.695	Anas_platyrhynchos
ENSCSEG00000012499	ddb1	99	89.069	ENSACAG00000017758	DDB1	93	90.575	Anolis_carolinensis
ENSCSEG00000012499	ddb1	99	89.575	ENSANAG00000021878	DDB1	93	91.140	Aotus_nancymaae
ENSCSEG00000012499	ddb1	99	96.255	ENSACLG00000012401	ddb1	99	97.204	Astatotilapia_calliptera
ENSCSEG00000012499	ddb1	54	30.612	ENSAMXG00000008485	cpsf1	52	30.612	Astyanax_mexicanus
ENSCSEG00000012499	ddb1	99	89.575	ENSBTAG00000021569	DDB1	87	91.140	Bos_taurus
ENSCSEG00000012499	ddb1	100	37.475	WBGene00010890	ddb-1	93	37.167	Caenorhabditis_elegans
ENSCSEG00000012499	ddb1	99	89.575	ENSCJAG00000019319	DDB1	93	91.140	Callithrix_jacchus
ENSCSEG00000012499	ddb1	99	89.676	ENSCAFG00000016264	DDB1	98	91.235	Canis_familiaris
ENSCSEG00000012499	ddb1	99	89.676	ENSCAFG00020012722	DDB1	98	91.235	Canis_lupus_dingo
ENSCSEG00000012499	ddb1	99	89.575	ENSCHIG00000014969	DDB1	93	91.140	Capra_hircus
ENSCSEG00000012499	ddb1	99	89.170	ENSTSYG00000008027	DDB1	93	90.763	Carlito_syrichta
ENSCSEG00000012499	ddb1	98	89.452	ENSCAPG00000010786	DDB1	93	91.058	Cavia_aperea
ENSCSEG00000012499	ddb1	99	89.474	ENSCPOG00000009956	DDB1	93	91.046	Cavia_porcellus
ENSCSEG00000012499	ddb1	99	89.575	ENSCCAG00000035883	DDB1	93	91.140	Cebus_capucinus
ENSCSEG00000012499	ddb1	99	87.300	ENSCATG00000044495	DDB1	94	89.003	Cercocebus_atys
ENSCSEG00000012499	ddb1	99	89.474	ENSCLAG00000004126	DDB1	93	91.046	Chinchilla_lanigera
ENSCSEG00000012499	ddb1	99	89.575	ENSCSAG00000006392	DDB1	93	91.140	Chlorocebus_sabaeus
ENSCSEG00000012499	ddb1	85	90.808	ENSCHOG00000011377	DDB1	85	84.034	Choloepus_hoffmanni
ENSCSEG00000012499	ddb1	99	88.968	ENSCPBG00000017728	DDB1	93	90.575	Chrysemys_picta_bellii
ENSCSEG00000012499	ddb1	99	60.900	ENSCING00000007437	-	93	61.323	Ciona_intestinalis
ENSCSEG00000012499	ddb1	91	60.675	ENSCSAVG00000004783	-	100	60.048	Ciona_savignyi
ENSCSEG00000012499	ddb1	99	89.575	ENSCANG00000019948	DDB1	93	91.140	Colobus_angolensis_palliatus
ENSCSEG00000012499	ddb1	99	89.676	ENSCGRG00001016599	Ddb1	98	90.205	Cricetulus_griseus_chok1gshd
ENSCSEG00000012499	ddb1	99	89.676	ENSCGRG00000013427	Ddb1	93	91.235	Cricetulus_griseus_crigri
ENSCSEG00000012499	ddb1	99	95.648	ENSCVAG00000019531	ddb1	98	97.172	Cyprinodon_variegatus
ENSCSEG00000012499	ddb1	99	89.889	ENSDARG00000074431	ddb1	93	91.808	Danio_rerio
ENSCSEG00000012499	ddb1	99	89.676	ENSDNOG00000014884	DDB1	96	91.235	Dasypus_novemcinctus
ENSCSEG00000012499	ddb1	77	94.091	ENSDORG00000000127	Ddb1	92	94.091	Dipodomys_ordii
ENSCSEG00000012499	ddb1	72	30.625	FBgn0024698	Cpsf160	63	30.625	Drosophila_melanogaster
ENSCSEG00000012499	ddb1	99	60.181	FBgn0260962	pic	93	61.069	Drosophila_melanogaster
ENSCSEG00000012499	ddb1	64	94.094	ENSETEG00000001053	-	64	94.094	Echinops_telfairi
ENSCSEG00000012499	ddb1	91	82.386	ENSEBUG00000014593	ddb1	97	83.915	Eptatretus_burgeri
ENSCSEG00000012499	ddb1	99	89.676	ENSEASG00005008184	DDB1	93	91.235	Equus_asinus_asinus
ENSCSEG00000012499	ddb1	99	89.676	ENSECAG00000012136	DDB1	93	91.235	Equus_caballus
ENSCSEG00000012499	ddb1	85	86.802	ENSEEUG00000003194	DDB1	85	86.802	Erinaceus_europaeus
ENSCSEG00000012499	ddb1	99	95.040	ENSELUG00000023868	ddb1	93	96.607	Esox_lucius
ENSCSEG00000012499	ddb1	99	89.676	ENSFCAG00000029716	DDB1	93	91.235	Felis_catus
ENSCSEG00000012499	ddb1	99	88.866	ENSFALG00000011981	DDB1	93	90.386	Ficedula_albicollis
ENSCSEG00000012499	ddb1	99	89.474	ENSFDAG00000005128	DDB1	93	91.046	Fukomys_damarensis
ENSCSEG00000012499	ddb1	89	98.947	ENSFHEG00000022133	ddb1	92	98.295	Fundulus_heteroclitus
ENSCSEG00000012499	ddb1	78	98.662	ENSGMOG00000019386	ddb1	93	98.662	Gadus_morhua
ENSCSEG00000012499	ddb1	99	89.069	ENSGALG00000042333	DDB1	93	90.575	Gallus_gallus
ENSCSEG00000012499	ddb1	99	95.951	ENSGAFG00000013142	ddb1	98	97.644	Gambusia_affinis
ENSCSEG00000012499	ddb1	99	96.356	ENSGACG00000017182	ddb1	97	98.115	Gasterosteus_aculeatus
ENSCSEG00000012499	ddb1	94	88.841	ENSGAGG00000014124	DDB1	93	90.547	Gopherus_agassizii
ENSCSEG00000012499	ddb1	99	89.575	ENSGGOG00000004052	DDB1	93	91.140	Gorilla_gorilla
ENSCSEG00000012499	ddb1	99	96.255	ENSHBUG00000008873	ddb1	93	98.010	Haplochromis_burtoni
ENSCSEG00000012499	ddb1	99	89.271	ENSHGLG00000018430	DDB1	93	90.858	Heterocephalus_glaber_female
ENSCSEG00000012499	ddb1	99	88.158	ENSHGLG00100014475	DDB1	93	89.821	Heterocephalus_glaber_male
ENSCSEG00000012499	ddb1	99	96.154	ENSHCOG00000018670	ddb1	97	97.832	Hippocampus_comes
ENSCSEG00000012499	ddb1	99	93.725	ENSIPUG00000005612	DDB1	96	95.476	Ictalurus_punctatus
ENSCSEG00000012499	ddb1	99	89.575	ENSSTOG00000007552	DDB1	93	91.140	Ictidomys_tridecemlineatus
ENSCSEG00000012499	ddb1	99	89.575	ENSJJAG00000017769	Ddb1	93	91.140	Jaculus_jaculus
ENSCSEG00000012499	ddb1	99	96.053	ENSKMAG00000002315	ddb1	99	97.644	Kryptolebias_marmoratus
ENSCSEG00000012499	ddb1	98	96.701	ENSLBEG00000017065	ddb1	99	98.335	Labrus_bergylta
ENSCSEG00000012499	ddb1	99	89.575	ENSLACG00000017611	DDB1	96	90.874	Latimeria_chalumnae
ENSCSEG00000012499	ddb1	91	86.483	ENSLOCG00000000012	ddb1	92	87.544	Lepisosteus_oculatus
ENSCSEG00000012499	ddb1	99	89.372	ENSLAFG00000011513	DDB1	93	90.952	Loxodonta_africana
ENSCSEG00000012499	ddb1	99	89.575	ENSMFAG00000042035	DDB1	93	91.140	Macaca_fascicularis
ENSCSEG00000012499	ddb1	99	89.575	ENSMMUG00000002691	DDB1	100	93.056	Macaca_mulatta
ENSCSEG00000012499	ddb1	99	89.575	ENSMNEG00000031559	DDB1	93	91.140	Macaca_nemestrina
ENSCSEG00000012499	ddb1	99	89.575	ENSMLEG00000044136	DDB1	97	89.562	Mandrillus_leucophaeus
ENSCSEG00000012499	ddb1	99	96.964	ENSMAMG00000014372	ddb1	93	98.680	Mastacembelus_armatus
ENSCSEG00000012499	ddb1	99	96.255	ENSMZEG00005013835	ddb1	93	97.926	Maylandia_zebra
ENSCSEG00000012499	ddb1	91	89.712	ENSMGAG00000004990	DDB1	92	90.222	Meleagris_gallopavo
ENSCSEG00000012499	ddb1	99	89.676	ENSMAUG00000012926	Ddb1	93	91.235	Mesocricetus_auratus
ENSCSEG00000012499	ddb1	99	89.777	ENSMICG00000013703	DDB1	93	91.329	Microcebus_murinus
ENSCSEG00000012499	ddb1	99	89.676	ENSMOCG00000020499	Ddb1	93	91.235	Microtus_ochrogaster
ENSCSEG00000012499	ddb1	100	96.866	ENSMMOG00000001758	ddb1	99	98.469	Mola_mola
ENSCSEG00000012499	ddb1	99	81.616	ENSMODG00000020353	DDB1	92	82.895	Monodelphis_domestica
ENSCSEG00000012499	ddb1	99	96.862	ENSMALG00000014071	ddb1	93	98.586	Monopterus_albus
ENSCSEG00000012499	ddb1	99	89.676	MGP_CAROLIEiJ_G0022695	Ddb1	93	91.235	Mus_caroli
ENSCSEG00000012499	ddb1	99	89.777	ENSMUSG00000024740	Ddb1	93	91.329	Mus_musculus
ENSCSEG00000012499	ddb1	99	89.676	MGP_PahariEiJ_G0014189	Ddb1	93	91.235	Mus_pahari
ENSCSEG00000012499	ddb1	99	89.777	MGP_SPRETEiJ_G0023609	Ddb1	93	91.329	Mus_spretus
ENSCSEG00000012499	ddb1	99	88.866	ENSMPUG00000014200	DDB1	93	88.030	Mustela_putorius_furo
ENSCSEG00000012499	ddb1	99	89.777	ENSMLUG00000013232	DDB1	93	91.329	Myotis_lucifugus
ENSCSEG00000012499	ddb1	99	89.575	ENSNGAG00000009384	Ddb1	93	91.140	Nannospalax_galili
ENSCSEG00000012499	ddb1	99	96.356	ENSNBRG00000019581	ddb1	93	98.021	Neolamprologus_brichardi
ENSCSEG00000012499	ddb1	99	86.800	ENSNLEG00000002022	DDB1	94	88.537	Nomascus_leucogenys
ENSCSEG00000012499	ddb1	88	100.000	ENSMEUG00000001099	DDB1	86	97.073	Notamacropus_eugenii
ENSCSEG00000012499	ddb1	88	87.600	ENSOPRG00000008254	DDB1	84	82.143	Ochotona_princeps
ENSCSEG00000012499	ddb1	99	89.474	ENSODEG00000002419	DDB1	93	91.046	Octodon_degus
ENSCSEG00000012499	ddb1	99	96.255	ENSONIG00000005804	ddb1	93	97.926	Oreochromis_niloticus
ENSCSEG00000012499	ddb1	88	90.711	ENSOANG00000004897	DDB1	92	90.871	Ornithorhynchus_anatinus
ENSCSEG00000012499	ddb1	99	89.676	ENSOCUG00000001667	DDB1	93	91.235	Oryctolagus_cuniculus
ENSCSEG00000012499	ddb1	99	95.344	ENSORLG00000001399	ddb1	98	96.926	Oryzias_latipes
ENSCSEG00000012499	ddb1	99	95.243	ENSORLG00020001277	ddb1	94	96.984	Oryzias_latipes_hni
ENSCSEG00000012499	ddb1	99	95.344	ENSORLG00015002080	ddb1	97	97.078	Oryzias_latipes_hsok
ENSCSEG00000012499	ddb1	99	95.648	ENSOMEG00000006181	ddb1	96	97.361	Oryzias_melastigma
ENSCSEG00000012499	ddb1	99	89.777	ENSOGAG00000016103	DDB1	93	91.329	Otolemur_garnettii
ENSCSEG00000012499	ddb1	99	89.575	ENSOARG00000011716	DDB1	92	91.140	Ovis_aries
ENSCSEG00000012499	ddb1	99	89.575	ENSPPAG00000035343	DDB1	93	91.140	Pan_paniscus
ENSCSEG00000012499	ddb1	99	89.676	ENSPPRG00000013300	DDB1	93	91.235	Panthera_pardus
ENSCSEG00000012499	ddb1	98	89.659	ENSPTIG00000006909	DDB1	91	91.250	Panthera_tigris_altaica
ENSCSEG00000012499	ddb1	99	89.575	ENSPTRG00000003737	DDB1	93	91.140	Pan_troglodytes
ENSCSEG00000012499	ddb1	99	89.575	ENSPANG00000000242	DDB1	93	91.140	Papio_anubis
ENSCSEG00000012499	ddb1	99	94.433	ENSPKIG00000019213	ddb1	93	96.136	Paramormyrops_kingsleyae
ENSCSEG00000012499	ddb1	98	88.683	ENSPSIG00000013275	DDB1	93	90.335	Pelodiscus_sinensis
ENSCSEG00000012499	ddb1	100	96.461	ENSPMGG00000021179	ddb1	99	98.061	Periophthalmus_magnuspinnatus
ENSCSEG00000012499	ddb1	99	89.676	ENSPEMG00000012241	Ddb1	93	91.235	Peromyscus_maniculatus_bairdii
ENSCSEG00000012499	ddb1	98	84.607	ENSPMAG00000008479	ddb1	100	86.444	Petromyzon_marinus
ENSCSEG00000012499	ddb1	99	89.980	ENSPCIG00000002643	DDB1	93	91.423	Phascolarctos_cinereus
ENSCSEG00000012499	ddb1	99	96.154	ENSPFOG00000002768	ddb1	93	97.832	Poecilia_formosa
ENSCSEG00000012499	ddb1	99	96.154	ENSPLAG00000017227	ddb1	97	97.832	Poecilia_latipinna
ENSCSEG00000012499	ddb1	99	96.154	ENSPMEG00000011398	ddb1	97	97.832	Poecilia_mexicana
ENSCSEG00000012499	ddb1	99	96.154	ENSPREG00000004440	ddb1	96	97.832	Poecilia_reticulata
ENSCSEG00000012499	ddb1	99	85.758	ENSPPYG00000003193	DDB1	93	87.582	Pongo_abelii
ENSCSEG00000012499	ddb1	81	88.583	ENSPCAG00000011040	DDB1	78	89.002	Procavia_capensis
ENSCSEG00000012499	ddb1	99	89.091	ENSPCOG00000015176	DDB1	93	90.687	Propithecus_coquereli
ENSCSEG00000012499	ddb1	99	89.474	ENSPVAG00000003847	DDB1	93	91.046	Pteropus_vampyrus
ENSCSEG00000012499	ddb1	99	94.534	ENSPNAG00000006635	ddb1	98	94.815	Pygocentrus_nattereri
ENSCSEG00000012499	ddb1	99	89.777	ENSRNOG00000020715	Ddb1	93	91.329	Rattus_norvegicus
ENSCSEG00000012499	ddb1	99	89.575	ENSRBIG00000033611	DDB1	94	91.140	Rhinopithecus_bieti
ENSCSEG00000012499	ddb1	99	89.575	ENSRROG00000041407	DDB1	93	91.140	Rhinopithecus_roxellana
ENSCSEG00000012499	ddb1	99	89.676	ENSSBOG00000019775	DDB1	93	91.235	Saimiri_boliviensis_boliviensis
ENSCSEG00000012499	ddb1	91	88.053	ENSSHAG00000011600	DDB1	93	88.900	Sarcophilus_harrisii
ENSCSEG00000012499	ddb1	99	94.636	ENSSFOG00015011151	ddb1	95	96.324	Scleropages_formosus
ENSCSEG00000012499	ddb1	99	96.761	ENSSMAG00000009495	ddb1	93	98.492	Scophthalmus_maximus
ENSCSEG00000012499	ddb1	99	96.964	ENSSDUG00000004642	ddb1	93	98.680	Seriola_dumerili
ENSCSEG00000012499	ddb1	99	96.964	ENSSLDG00000015804	ddb1	93	98.680	Seriola_lalandi_dorsalis
ENSCSEG00000012499	ddb1	67	96.226	ENSSARG00000003290	-	70	96.226	Sorex_araneus
ENSCSEG00000012499	ddb1	99	89.170	ENSSPUG00000019338	DDB1	93	90.763	Sphenodon_punctatus
ENSCSEG00000012499	ddb1	99	97.065	ENSSPAG00000009888	ddb1	98	98.775	Stegastes_partitus
ENSCSEG00000012499	ddb1	99	89.069	ENSSSCG00000013094	DDB1	93	90.669	Sus_scrofa
ENSCSEG00000012499	ddb1	99	89.271	ENSTGUG00000006414	DDB1	93	90.763	Taeniopygia_guttata
ENSCSEG00000012499	ddb1	99	95.648	ENSTRUG00000016682	ddb1	97	97.078	Takifugu_rubripes
ENSCSEG00000012499	ddb1	85	91.082	ENSTNIG00000009565	ddb1	92	91.658	Tetraodon_nigroviridis
ENSCSEG00000012499	ddb1	91	84.488	ENSTTRG00000011055	DDB1	87	85.444	Tursiops_truncatus
ENSCSEG00000012499	ddb1	99	89.676	ENSUAMG00000017793	DDB1	92	91.235	Ursus_americanus
ENSCSEG00000012499	ddb1	99	89.676	ENSUMAG00000011788	DDB1	97	91.235	Ursus_maritimus
ENSCSEG00000012499	ddb1	94	84.640	ENSVPAG00000007963	DDB1	82	86.132	Vicugna_pacos
ENSCSEG00000012499	ddb1	99	89.676	ENSVVUG00000004987	DDB1	93	91.235	Vulpes_vulpes
ENSCSEG00000012499	ddb1	100	87.576	ENSXETG00000008820	ddb1	93	88.920	Xenopus_tropicalis
ENSCSEG00000012499	ddb1	100	95.956	ENSXCOG00000013956	ddb1	99	97.551	Xiphophorus_couchianus
ENSCSEG00000012499	ddb1	99	95.951	ENSXMAG00000000022	ddb1	98	97.644	Xiphophorus_maculatus