EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012616 (Gene tree)
Gene ID: 103378216
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 17073 bases
Position: chr4:13641304-13658376
Accession: 103378216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000019975	Npa1	PF11707.8	1.8e-80	1	1
ENSCSEP00000020036	Npa1	PF11707.8	6.1e-64	1	2
ENSCSEP00000020036	Npa1	PF11707.8	6.1e-64	2	2
ENSCSEP00000019985	Npa1	PF11707.8	5.9e-53	1	2
ENSCSEP00000019985	Npa1	PF11707.8	5.9e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000020231	-	6507	-	ENSCSEP00000019985	2168 (aa)	-	-
ENSCSET00000020283	-	6315	-	ENSCSEP00000020036	2104 (aa)	-	-
ENSCSET00000020220	-	6657	XM_008309335	ENSCSEP00000019975	2218 (aa)	XP_008307557	-

Gene Model

Click here to download ENSCSEG00000012616's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012616's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012616	urb1	99	50.877	ENSG00000142207	URB1	97	48.663	Homo_sapiens
ENSCSEG00000012616	urb1	98	75.956	ENSAPOG00000020308	urb1	100	75.956	Acanthochromis_polyacanthus
ENSCSEG00000012616	urb1	99	48.889	ENSAMEG00000011998	URB1	97	48.889	Ailuropoda_melanoleuca
ENSCSEG00000012616	urb1	95	63.063	ENSACIG00000003248	urb1	97	63.155	Amphilophus_citrinellus
ENSCSEG00000012616	urb1	97	73.297	ENSAOCG00000010364	urb1	100	73.297	Amphiprion_ocellaris
ENSCSEG00000012616	urb1	96	73.319	ENSAPEG00000010758	urb1	99	73.319	Amphiprion_percula
ENSCSEG00000012616	urb1	99	67.703	ENSATEG00000011790	urb1	100	67.703	Anabas_testudineus
ENSCSEG00000012616	urb1	97	44.838	ENSAPLG00000012791	URB1	99	45.173	Anas_platyrhynchos
ENSCSEG00000012616	urb1	98	43.084	ENSACAG00000002817	URB1	99	42.714	Anolis_carolinensis
ENSCSEG00000012616	urb1	99	42.445	ENSANAG00000024617	URB1	97	50.270	Aotus_nancymaae
ENSCSEG00000012616	urb1	99	66.271	ENSACLG00000024865	urb1	100	66.271	Astatotilapia_calliptera
ENSCSEG00000012616	urb1	99	53.608	ENSAMXG00000012306	urb1	97	53.608	Astyanax_mexicanus
ENSCSEG00000012616	urb1	99	42.167	ENSBTAG00000012412	URB1	99	42.286	Bos_taurus
ENSCSEG00000012616	urb1	99	50.296	ENSCJAG00000009118	URB1	97	48.649	Callithrix_jacchus
ENSCSEG00000012616	urb1	99	41.935	ENSCAFG00000008892	URB1	99	41.892	Canis_familiaris
ENSCSEG00000012616	urb1	99	41.411	ENSCAFG00020025994	-	99	41.419	Canis_lupus_dingo
ENSCSEG00000012616	urb1	99	49.444	ENSCAFG00020025987	-	97	49.444	Canis_lupus_dingo
ENSCSEG00000012616	urb1	99	42.071	ENSCHIG00000015645	URB1	99	42.252	Capra_hircus
ENSCSEG00000012616	urb1	99	42.128	ENSTSYG00000013286	URB1	99	42.041	Carlito_syrichta
ENSCSEG00000012616	urb1	98	41.281	ENSCAPG00000015589	URB1	99	41.310	Cavia_aperea
ENSCSEG00000012616	urb1	99	49.189	ENSCPOG00000006748	URB1	97	49.189	Cavia_porcellus
ENSCSEG00000012616	urb1	99	42.167	ENSCCAG00000021299	URB1	99	42.323	Cebus_capucinus
ENSCSEG00000012616	urb1	99	42.820	ENSCATG00000042630	URB1	99	42.609	Cercocebus_atys
ENSCSEG00000012616	urb1	99	48.421	ENSCLAG00000005262	URB1	97	48.421	Chinchilla_lanigera
ENSCSEG00000012616	urb1	98	52.083	ENSCSAG00000009584	URB1	95	50.000	Chlorocebus_sabaeus
ENSCSEG00000012616	urb1	99	45.356	ENSCPBG00000006454	URB1	99	45.356	Chrysemys_picta_bellii
ENSCSEG00000012616	urb1	99	42.582	ENSCANG00000031088	URB1	99	42.590	Colobus_angolensis_palliatus
ENSCSEG00000012616	urb1	99	47.953	ENSCGRG00001010616	Urb1	98	46.354	Cricetulus_griseus_chok1gshd
ENSCSEG00000012616	urb1	98	50.658	ENSCGRG00000015840	Urb1	98	50.658	Cricetulus_griseus_crigri
ENSCSEG00000012616	urb1	93	68.790	ENSCVAG00000009076	urb1	98	70.345	Cyprinodon_variegatus
ENSCSEG00000012616	urb1	99	52.197	ENSDARG00000060308	urb1	99	52.197	Danio_rerio
ENSCSEG00000012616	urb1	85	48.555	ENSDNOG00000015586	URB1	96	48.555	Dasypus_novemcinctus
ENSCSEG00000012616	urb1	99	48.913	ENSDORG00000006735	Urb1	97	48.913	Dipodomys_ordii
ENSCSEG00000012616	urb1	92	49.811	ENSETEG00000009080	URB1	91	49.811	Echinops_telfairi
ENSCSEG00000012616	urb1	99	47.778	ENSEASG00005007711	URB1	95	50.980	Equus_asinus_asinus
ENSCSEG00000012616	urb1	94	52.886	ENSECAG00000013206	URB1	97	52.768	Equus_caballus
ENSCSEG00000012616	urb1	99	54.859	ENSELUG00000020516	urb1	95	60.395	Esox_lucius
ENSCSEG00000012616	urb1	99	41.924	ENSFCAG00000002177	URB1	99	42.174	Felis_catus
ENSCSEG00000012616	urb1	94	45.469	ENSFALG00000004636	URB1	99	41.470	Ficedula_albicollis
ENSCSEG00000012616	urb1	99	42.845	ENSFDAG00000007288	URB1	94	42.820	Fukomys_damarensis
ENSCSEG00000012616	urb1	99	60.738	ENSFHEG00000000202	urb1	99	61.701	Fundulus_heteroclitus
ENSCSEG00000012616	urb1	93	55.864	ENSGMOG00000001838	urb1	94	55.864	Gadus_morhua
ENSCSEG00000012616	urb1	99	44.736	ENSGALG00000015887	URB1	98	44.731	Gallus_gallus
ENSCSEG00000012616	urb1	95	66.809	ENSGAFG00000020694	urb1	99	66.809	Gambusia_affinis
ENSCSEG00000012616	urb1	99	66.064	ENSGACG00000011703	urb1	99	66.064	Gasterosteus_aculeatus
ENSCSEG00000012616	urb1	99	45.411	ENSGAGG00000022544	URB1	99	45.368	Gopherus_agassizii
ENSCSEG00000012616	urb1	99	50.292	ENSGGOG00000000285	URB1	97	48.128	Gorilla_gorilla
ENSCSEG00000012616	urb1	99	66.183	ENSHBUG00000001904	urb1	100	66.183	Haplochromis_burtoni
ENSCSEG00000012616	urb1	99	41.714	ENSHGLG00000004907	URB1	99	41.584	Heterocephalus_glaber_female
ENSCSEG00000012616	urb1	99	41.999	ENSHGLG00100010749	URB1	99	41.868	Heterocephalus_glaber_male
ENSCSEG00000012616	urb1	75	65.274	ENSHCOG00000018683	urb1	98	68.165	Hippocampus_comes
ENSCSEG00000012616	urb1	99	56.284	ENSIPUG00000014721	urb1	97	56.284	Ictalurus_punctatus
ENSCSEG00000012616	urb1	99	42.713	ENSSTOG00000004539	URB1	99	42.663	Ictidomys_tridecemlineatus
ENSCSEG00000012616	urb1	97	64.363	ENSKMAG00000006001	urb1	99	66.563	Kryptolebias_marmoratus
ENSCSEG00000012616	urb1	95	73.056	ENSLBEG00000027208	urb1	99	73.056	Labrus_bergylta
ENSCSEG00000012616	urb1	98	50.549	ENSLACG00000017059	URB1	95	50.549	Latimeria_chalumnae
ENSCSEG00000012616	urb1	99	50.889	ENSLOCG00000009190	urb1	99	50.889	Lepisosteus_oculatus
ENSCSEG00000012616	urb1	99	42.595	ENSLAFG00000010407	URB1	99	42.420	Loxodonta_africana
ENSCSEG00000012616	urb1	99	42.557	ENSMFAG00000034391	URB1	96	42.460	Macaca_fascicularis
ENSCSEG00000012616	urb1	99	42.513	ENSMMUG00000010295	URB1	99	42.435	Macaca_mulatta
ENSCSEG00000012616	urb1	99	41.805	ENSMNEG00000032981	URB1	99	41.819	Macaca_nemestrina
ENSCSEG00000012616	urb1	99	42.726	ENSMLEG00000041435	URB1	99	42.646	Mandrillus_leucophaeus
ENSCSEG00000012616	urb1	99	65.310	ENSMAMG00000011238	urb1	99	65.310	Mastacembelus_armatus
ENSCSEG00000012616	urb1	99	65.700	ENSMZEG00005011862	urb1	100	65.700	Maylandia_zebra
ENSCSEG00000012616	urb1	97	62.676	ENSMGAG00000014512	URB1	96	62.676	Meleagris_gallopavo
ENSCSEG00000012616	urb1	92	50.000	ENSMAUG00000010516	Urb1	99	49.556	Mesocricetus_auratus
ENSCSEG00000012616	urb1	99	41.656	ENSMICG00000016424	URB1	99	41.768	Microcebus_murinus
ENSCSEG00000012616	urb1	99	47.486	ENSMOCG00000012613	Urb1	97	47.486	Microtus_ochrogaster
ENSCSEG00000012616	urb1	99	41.831	ENSMODG00000021076	URB1	99	41.831	Monodelphis_domestica
ENSCSEG00000012616	urb1	97	74.242	ENSMALG00000017411	urb1	99	74.242	Monopterus_albus
ENSCSEG00000012616	urb1	99	48.469	MGP_CAROLIEiJ_G0020948	Urb1	97	48.469	Mus_caroli
ENSCSEG00000012616	urb1	99	47.449	ENSMUSG00000039929	Urb1	97	47.449	Mus_musculus
ENSCSEG00000012616	urb1	99	41.751	MGP_PahariEiJ_G0016653	Urb1	96	50.556	Mus_pahari
ENSCSEG00000012616	urb1	99	48.469	MGP_SPRETEiJ_G0021854	Urb1	97	48.469	Mus_spretus
ENSCSEG00000012616	urb1	99	42.423	ENSMPUG00000001123	URB1	99	42.535	Mustela_putorius_furo
ENSCSEG00000012616	urb1	99	49.133	ENSNGAG00000001905	Urb1	96	49.133	Nannospalax_galili
ENSCSEG00000012616	urb1	81	65.614	ENSNBRG00000001049	urb1	99	65.614	Neolamprologus_brichardi
ENSCSEG00000012616	urb1	99	40.482	ENSNLEG00000026872	URB1	99	40.671	Nomascus_leucogenys
ENSCSEG00000012616	urb1	95	46.184	ENSMEUG00000010828	URB1	90	48.045	Notamacropus_eugenii
ENSCSEG00000012616	urb1	99	40.834	ENSOPRG00000013482	URB1	99	40.729	Ochotona_princeps
ENSCSEG00000012616	urb1	99	42.193	ENSODEG00000002587	URB1	99	41.995	Octodon_degus
ENSCSEG00000012616	urb1	99	66.491	ENSONIG00000005599	urb1	100	66.491	Oreochromis_niloticus
ENSCSEG00000012616	urb1	99	42.609	ENSOCUG00000009381	URB1	99	42.795	Oryctolagus_cuniculus
ENSCSEG00000012616	urb1	99	62.004	ENSORLG00000003429	urb1	99	62.004	Oryzias_latipes
ENSCSEG00000012616	urb1	99	61.922	ENSORLG00020013785	urb1	99	61.922	Oryzias_latipes_hni
ENSCSEG00000012616	urb1	98	69.832	ENSORLG00015019421	urb1	98	61.838	Oryzias_latipes_hsok
ENSCSEG00000012616	urb1	78	67.436	ENSOMEG00000002094	urb1	98	67.436	Oryzias_melastigma
ENSCSEG00000012616	urb1	99	47.644	ENSOGAG00000017140	URB1	97	47.644	Otolemur_garnettii
ENSCSEG00000012616	urb1	94	45.255	ENSOARG00000013679	URB1	97	45.031	Ovis_aries
ENSCSEG00000012616	urb1	99	41.944	ENSPPAG00000003423	URB1	99	41.913	Pan_paniscus
ENSCSEG00000012616	urb1	99	41.982	ENSPPRG00000023131	URB1	99	42.231	Panthera_pardus
ENSCSEG00000012616	urb1	88	50.000	ENSPTIG00000016125	URB1	92	50.000	Panthera_tigris_altaica
ENSCSEG00000012616	urb1	99	50.877	ENSPTRG00000013852	URB1	97	48.663	Pan_troglodytes
ENSCSEG00000012616	urb1	98	53.247	ENSPANG00000021964	URB1	99	42.559	Papio_anubis
ENSCSEG00000012616	urb1	99	50.914	ENSPKIG00000003683	urb1	99	51.309	Paramormyrops_kingsleyae
ENSCSEG00000012616	urb1	99	47.222	ENSPEMG00000021205	Urb1	96	47.222	Peromyscus_maniculatus_bairdii
ENSCSEG00000012616	urb1	73	32.353	ENSPMAG00000009733	URB1	99	32.477	Petromyzon_marinus
ENSCSEG00000012616	urb1	99	41.557	ENSPCIG00000016350	URB1	99	42.124	Phascolarctos_cinereus
ENSCSEG00000012616	urb1	97	61.950	ENSPLAG00000004371	urb1	100	61.978	Poecilia_latipinna
ENSCSEG00000012616	urb1	99	62.621	ENSPMEG00000006634	urb1	100	62.621	Poecilia_mexicana
ENSCSEG00000012616	urb1	99	62.198	ENSPREG00000013453	urb1	100	62.198	Poecilia_reticulata
ENSCSEG00000012616	urb1	99	49.733	ENSPPYG00000011359	URB1	97	49.733	Pongo_abelii
ENSCSEG00000012616	urb1	96	48.202	ENSPCAG00000007430	URB1	96	48.202	Procavia_capensis
ENSCSEG00000012616	urb1	99	42.349	ENSPCOG00000022695	URB1	99	42.448	Propithecus_coquereli
ENSCSEG00000012616	urb1	99	41.930	ENSPVAG00000000889	URB1	99	41.930	Pteropus_vampyrus
ENSCSEG00000012616	urb1	99	64.693	ENSPNYG00000010589	urb1	100	64.693	Pundamilia_nyererei
ENSCSEG00000012616	urb1	99	57.838	ENSPNAG00000019324	urb1	97	57.838	Pygocentrus_nattereri
ENSCSEG00000012616	urb1	99	41.497	ENSRNOG00000002080	Urb1	97	45.918	Rattus_norvegicus
ENSCSEG00000012616	urb1	99	42.563	ENSRBIG00000033122	URB1	99	42.534	Rhinopithecus_bieti
ENSCSEG00000012616	urb1	99	42.519	ENSRROG00000040237	URB1	99	42.440	Rhinopithecus_roxellana
ENSCSEG00000012616	urb1	99	41.840	ENSSBOG00000027672	URB1	99	41.927	Saimiri_boliviensis_boliviensis
ENSCSEG00000012616	urb1	99	41.674	ENSSHAG00000005140	URB1	99	41.805	Sarcophilus_harrisii
ENSCSEG00000012616	urb1	93	53.465	ENSSFOG00015000339	urb1	99	53.560	Scleropages_formosus
ENSCSEG00000012616	urb1	99	71.241	ENSSMAG00000003782	urb1	100	71.285	Scophthalmus_maximus
ENSCSEG00000012616	urb1	99	72.151	ENSSDUG00000012313	urb1	99	72.151	Seriola_dumerili
ENSCSEG00000012616	urb1	99	71.843	ENSSLDG00000023179	urb1	99	71.843	Seriola_lalandi_dorsalis
ENSCSEG00000012616	urb1	99	43.315	ENSSPUG00000012447	URB1	99	43.531	Sphenodon_punctatus
ENSCSEG00000012616	urb1	99	68.521	ENSSPAG00000006325	urb1	99	68.521	Stegastes_partitus
ENSCSEG00000012616	urb1	99	49.444	ENSSSCG00000032024	URB1	97	49.444	Sus_scrofa
ENSCSEG00000012616	urb1	74	46.631	ENSTGUG00000013442	URB1	100	46.631	Taeniopygia_guttata
ENSCSEG00000012616	urb1	99	63.428	ENSTRUG00000009372	urb1	99	63.428	Takifugu_rubripes
ENSCSEG00000012616	urb1	99	60.843	ENSTNIG00000016277	urb1	99	60.843	Tetraodon_nigroviridis
ENSCSEG00000012616	urb1	75	55.422	ENSTBEG00000010044	URB1	71	55.422	Tupaia_belangeri
ENSCSEG00000012616	urb1	84	65.882	ENSTTRG00000007712	URB1	86	65.882	Tursiops_truncatus
ENSCSEG00000012616	urb1	99	42.243	ENSUAMG00000012231	URB1	99	42.057	Ursus_americanus
ENSCSEG00000012616	urb1	87	50.980	ENSUMAG00000017419	URB1	93	50.355	Ursus_maritimus
ENSCSEG00000012616	urb1	64	58.400	ENSVPAG00000001164	URB1	64	59.028	Vicugna_pacos
ENSCSEG00000012616	urb1	99	49.451	ENSVVUG00000000551	URB1	97	49.451	Vulpes_vulpes
ENSCSEG00000012616	urb1	99	43.155	ENSXETG00000009895	urb1	99	42.735	Xenopus_tropicalis
ENSCSEG00000012616	urb1	99	71.038	ENSXCOG00000005500	urb1	100	71.038	Xiphophorus_couchianus
ENSCSEG00000012616	urb1	99	71.585	ENSXMAG00000007253	urb1	100	71.585	Xiphophorus_maculatus