EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012633 (Gene tree)
Gene ID: 103382349
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4305 bases
Position: chr1:16728483-16732787
Accession: 103382349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000019800	TruB_N	PF01509.18	5.5e-22	1	1
ENSCSEP00000019800	PUA	PF01472.20	8e-16	1	1
ENSCSEP00000019800	DKCLD	PF08068.12	5.3e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000020039	-	1416	XM_008315115	ENSCSEP00000019800	471 (aa)	XP_008313337	-

Gene Model

Click here to download ENSCSEG00000012633's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012633's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012633	dkc1	93	80.822	ENSG00000130826	DKC1	99	85.922	Homo_sapiens
ENSCSEG00000012633	dkc1	97	83.369	ENSAPOG00000007799	dkc1	94	85.000	Acanthochromis_polyacanthus
ENSCSEG00000012633	dkc1	92	82.069	ENSAMEG00000002776	DKC1	79	85.856	Ailuropoda_melanoleuca
ENSCSEG00000012633	dkc1	97	86.710	ENSACIG00000022614	dkc1	95	86.667	Amphilophus_citrinellus
ENSCSEG00000012633	dkc1	97	83.405	ENSAOCG00000013159	dkc1	96	84.421	Amphiprion_ocellaris
ENSCSEG00000012633	dkc1	97	83.405	ENSAPEG00000002284	dkc1	97	84.486	Amphiprion_percula
ENSCSEG00000012633	dkc1	90	87.133	ENSATEG00000013682	dkc1	93	85.895	Anabas_testudineus
ENSCSEG00000012633	dkc1	98	79.004	ENSACAG00000015600	DKC1	82	78.647	Anolis_carolinensis
ENSCSEG00000012633	dkc1	94	80.180	ENSANAG00000022732	DKC1	92	77.035	Aotus_nancymaae
ENSCSEG00000012633	dkc1	96	85.931	ENSACLG00000015605	dkc1	95	85.837	Astatotilapia_calliptera
ENSCSEG00000012633	dkc1	96	81.498	ENSAMXG00000017108	dkc1	94	82.241	Astyanax_mexicanus
ENSCSEG00000012633	dkc1	94	80.180	ENSBTAG00000013045	DKC1	92	78.205	Bos_taurus
ENSCSEG00000012633	dkc1	85	65.500	WBGene00010478	K01G5.5	90	65.500	Caenorhabditis_elegans
ENSCSEG00000012633	dkc1	94	79.505	ENSCJAG00000004210	DKC1	92	75.992	Callithrix_jacchus
ENSCSEG00000012633	dkc1	92	79.954	ENSCAFG00000019620	-	78	85.360	Canis_familiaris
ENSCSEG00000012633	dkc1	92	72.082	ENSCAFG00000009311	-	95	66.189	Canis_familiaris
ENSCSEG00000012633	dkc1	92	79.954	ENSCAFG00020008918	-	78	85.360	Canis_lupus_dingo
ENSCSEG00000012633	dkc1	92	71.363	ENSCAFG00020009379	-	91	65.909	Canis_lupus_dingo
ENSCSEG00000012633	dkc1	94	80.631	ENSCHIG00000017392	DKC1	92	78.205	Capra_hircus
ENSCSEG00000012633	dkc1	96	78.634	ENSTSYG00000007681	DKC1	80	82.201	Carlito_syrichta
ENSCSEG00000012633	dkc1	87	80.000	ENSCAPG00000003342	DKC1	85	85.224	Cavia_aperea
ENSCSEG00000012633	dkc1	94	80.045	ENSCPOG00000008825	DKC1	93	76.151	Cavia_porcellus
ENSCSEG00000012633	dkc1	93	71.005	ENSCCAG00000027418	DKC1	92	67.223	Cebus_capucinus
ENSCSEG00000012633	dkc1	90	79.412	ENSCATG00000033602	DKC1	92	76.200	Cercocebus_atys
ENSCSEG00000012633	dkc1	94	80.405	ENSCLAG00000000720	DKC1	93	77.615	Chinchilla_lanigera
ENSCSEG00000012633	dkc1	90	79.412	ENSCSAG00000006706	DKC1	92	76.200	Chlorocebus_sabaeus
ENSCSEG00000012633	dkc1	85	86.432	ENSCPBG00000005858	DKC1	86	85.856	Chrysemys_picta_bellii
ENSCSEG00000012633	dkc1	93	73.243	ENSCING00000004599	-	79	77.751	Ciona_intestinalis
ENSCSEG00000012633	dkc1	84	78.535	ENSCSAVG00000010047	-	91	77.094	Ciona_savignyi
ENSCSEG00000012633	dkc1	90	79.412	ENSCANG00000027987	DKC1	92	76.200	Colobus_angolensis_palliatus
ENSCSEG00000012633	dkc1	89	79.727	ENSCGRG00001014574	-	87	79.279	Cricetulus_griseus_chok1gshd
ENSCSEG00000012633	dkc1	80	66.313	ENSCGRG00001016789	-	81	66.313	Cricetulus_griseus_chok1gshd
ENSCSEG00000012633	dkc1	80	66.313	ENSCGRG00000014809	-	79	66.313	Cricetulus_griseus_crigri
ENSCSEG00000012633	dkc1	89	79.727	ENSCGRG00000016075	-	87	79.279	Cricetulus_griseus_crigri
ENSCSEG00000012633	dkc1	91	85.780	ENSCVAG00000010155	dkc1	93	84.388	Cyprinodon_variegatus
ENSCSEG00000012633	dkc1	87	87.981	ENSDARG00000016484	dkc1	93	81.356	Danio_rerio
ENSCSEG00000012633	dkc1	93	81.321	ENSDNOG00000004218	DKC1	79	86.352	Dasypus_novemcinctus
ENSCSEG00000012633	dkc1	59	73.118	ENSDORG00000013566	-	94	72.535	Dipodomys_ordii
ENSCSEG00000012633	dkc1	94	67.647	FBgn0259937	Nop60B	94	68.075	Drosophila_melanogaster
ENSCSEG00000012633	dkc1	89	79.271	ENSETEG00000016095	DKC1	96	76.008	Echinops_telfairi
ENSCSEG00000012633	dkc1	70	77.273	ENSEBUG00000015962	dkc1	99	80.887	Eptatretus_burgeri
ENSCSEG00000012633	dkc1	95	76.421	ENSEASG00005007484	DKC1	93	75.676	Equus_asinus_asinus
ENSCSEG00000012633	dkc1	95	76.421	ENSECAG00000023524	DKC1	93	75.676	Equus_caballus
ENSCSEG00000012633	dkc1	90	81.797	ENSEEUG00000003323	DKC1	99	81.560	Erinaceus_europaeus
ENSCSEG00000012633	dkc1	90	87.943	ENSELUG00000014538	dkc1	94	81.933	Esox_lucius
ENSCSEG00000012633	dkc1	92	81.149	ENSFCAG00000006577	DKC1	79	85.856	Felis_catus
ENSCSEG00000012633	dkc1	94	79.778	ENSFALG00000011496	DKC1	92	76.971	Ficedula_albicollis
ENSCSEG00000012633	dkc1	94	78.747	ENSFDAG00000002516	DKC1	94	78.158	Fukomys_damarensis
ENSCSEG00000012633	dkc1	89	87.559	ENSFHEG00000004627	dkc1	94	85.115	Fundulus_heteroclitus
ENSCSEG00000012633	dkc1	83	87.468	ENSGMOG00000017277	dkc1	100	87.468	Gadus_morhua
ENSCSEG00000012633	dkc1	84	87.406	ENSGALG00000005054	DKC1	85	80.909	Gallus_gallus
ENSCSEG00000012633	dkc1	90	87.037	ENSGAFG00000011486	dkc1	81	85.439	Gambusia_affinis
ENSCSEG00000012633	dkc1	85	93.467	ENSGACG00000004373	dkc1	97	93.300	Gasterosteus_aculeatus
ENSCSEG00000012633	dkc1	89	82.028	ENSGAGG00000011330	DKC1	85	81.179	Gopherus_agassizii
ENSCSEG00000012633	dkc1	93	80.822	ENSGGOG00000001045	DKC1	92	76.409	Gorilla_gorilla
ENSCSEG00000012633	dkc1	96	86.177	ENSHBUG00000012436	dkc1	93	86.081	Haplochromis_burtoni
ENSCSEG00000012633	dkc1	97	74.587	ENSHGLG00000000649	DKC1	93	75.983	Heterocephalus_glaber_female
ENSCSEG00000012633	dkc1	97	74.587	ENSHGLG00100001153	DKC1	95	75.983	Heterocephalus_glaber_male
ENSCSEG00000012633	dkc1	98	85.563	ENSHCOG00000021099	dkc1	95	84.760	Hippocampus_comes
ENSCSEG00000012633	dkc1	85	89.950	ENSIPUG00000010309	dkc1	78	89.578	Ictalurus_punctatus
ENSCSEG00000012633	dkc1	90	78.652	ENSSTOG00000001074	-	92	78.747	Ictidomys_tridecemlineatus
ENSCSEG00000012633	dkc1	90	73.041	ENSSTOG00000020149	-	86	73.165	Ictidomys_tridecemlineatus
ENSCSEG00000012633	dkc1	98	66.739	ENSSTOG00000011904	-	83	67.857	Ictidomys_tridecemlineatus
ENSCSEG00000012633	dkc1	59	73.646	ENSJJAG00000010086	-	94	72.887	Jaculus_jaculus
ENSCSEG00000012633	dkc1	89	87.529	ENSKMAG00000008010	dkc1	95	85.053	Kryptolebias_marmoratus
ENSCSEG00000012633	dkc1	89	87.500	ENSLBEG00000019122	dkc1	95	86.296	Labrus_bergylta
ENSCSEG00000012633	dkc1	85	86.683	ENSLACG00000014025	DKC1	92	86.600	Latimeria_chalumnae
ENSCSEG00000012633	dkc1	91	83.673	ENSLOCG00000013713	dkc1	88	85.579	Lepisosteus_oculatus
ENSCSEG00000012633	dkc1	90	80.272	ENSLAFG00000000221	DKC1	87	79.821	Loxodonta_africana
ENSCSEG00000012633	dkc1	90	79.638	ENSMFAG00000032398	DKC1	80	76.409	Macaca_fascicularis
ENSCSEG00000012633	dkc1	90	79.412	ENSMMUG00000005768	DKC1	92	76.200	Macaca_mulatta
ENSCSEG00000012633	dkc1	90	79.412	ENSMNEG00000034503	DKC1	92	76.200	Macaca_nemestrina
ENSCSEG00000012633	dkc1	90	79.412	ENSMLEG00000034422	DKC1	92	76.200	Mandrillus_leucophaeus
ENSCSEG00000012633	dkc1	86	93.827	ENSMAMG00000005427	dkc1	91	93.827	Mastacembelus_armatus
ENSCSEG00000012633	dkc1	96	86.393	ENSMZEG00005014503	dkc1	93	86.296	Maylandia_zebra
ENSCSEG00000012633	dkc1	77	89.256	ENSMGAG00000009238	DKC1	87	83.208	Meleagris_gallopavo
ENSCSEG00000012633	dkc1	59	72.401	ENSMAUG00000016454	-	94	71.831	Mesocricetus_auratus
ENSCSEG00000012633	dkc1	92	81.149	ENSMICG00000038751	-	92	76.042	Microcebus_murinus
ENSCSEG00000012633	dkc1	86	73.399	ENSMICG00000002818	-	99	77.260	Microcebus_murinus
ENSCSEG00000012633	dkc1	59	69.176	ENSMOCG00000001169	-	94	68.662	Microtus_ochrogaster
ENSCSEG00000012633	dkc1	85	91.294	ENSMMOG00000020348	dkc1	88	91.133	Mola_mola
ENSCSEG00000012633	dkc1	95	77.951	ENSMODG00000009243	DKC1	70	85.149	Monodelphis_domestica
ENSCSEG00000012633	dkc1	90	88.372	ENSMALG00000009454	dkc1	92	84.255	Monopterus_albus
ENSCSEG00000012633	dkc1	89	68.539	MGP_CAROLIEiJ_G0033191	Dkc1	90	82.707	Mus_caroli
ENSCSEG00000012633	dkc1	95	78.747	ENSMUSG00000031403	Dkc1	94	72.535	Mus_musculus
ENSCSEG00000012633	dkc1	90	77.928	MGP_PahariEiJ_G0031735	Dkc1	94	71.831	Mus_pahari
ENSCSEG00000012633	dkc1	95	78.747	MGP_SPRETEiJ_G0034351	Dkc1	94	72.535	Mus_spretus
ENSCSEG00000012633	dkc1	94	79.775	ENSMPUG00000016136	DKC1	75	85.608	Mustela_putorius_furo
ENSCSEG00000012633	dkc1	96	75.055	ENSMLUG00000011918	DKC1	77	82.878	Myotis_lucifugus
ENSCSEG00000012633	dkc1	59	73.477	ENSNGAG00000015724	-	94	72.887	Nannospalax_galili
ENSCSEG00000012633	dkc1	85	92.982	ENSNBRG00000005638	dkc1	82	92.840	Neolamprologus_brichardi
ENSCSEG00000012633	dkc1	90	79.864	ENSNLEG00000014323	DKC1	92	76.618	Nomascus_leucogenys
ENSCSEG00000012633	dkc1	85	81.343	ENSMEUG00000001066	DKC1	88	81.683	Notamacropus_eugenii
ENSCSEG00000012633	dkc1	74	79.310	ENSOPRG00000005248	DKC1	71	78.310	Ochotona_princeps
ENSCSEG00000012633	dkc1	84	87.626	ENSODEG00000011816	-	87	80.269	Octodon_degus
ENSCSEG00000012633	dkc1	59	73.118	ENSODEG00000000549	-	94	72.535	Octodon_degus
ENSCSEG00000012633	dkc1	96	86.739	ENSONIG00000013889	dkc1	93	86.510	Oreochromis_niloticus
ENSCSEG00000012633	dkc1	63	61.462	ENSOANG00000022295	-	84	61.667	Ornithorhynchus_anatinus
ENSCSEG00000012633	dkc1	92	81.567	ENSOANG00000008713	-	88	82.436	Ornithorhynchus_anatinus
ENSCSEG00000012633	dkc1	93	80.320	ENSOCUG00000012646	DKC1	92	76.360	Oryctolagus_cuniculus
ENSCSEG00000012633	dkc1	94	86.667	ENSORLG00000018748	dkc1	91	85.281	Oryzias_latipes
ENSCSEG00000012633	dkc1	96	84.783	ENSOMEG00000005786	dkc1	85	89.431	Oryzias_melastigma
ENSCSEG00000012633	dkc1	96	79.295	ENSOGAG00000003399	DKC1	77	85.856	Otolemur_garnettii
ENSCSEG00000012633	dkc1	95	80.045	ENSOARG00000003047	DKC1	92	78.205	Ovis_aries
ENSCSEG00000012633	dkc1	92	81.250	ENSPPAG00000023820	DKC1	87	79.596	Pan_paniscus
ENSCSEG00000012633	dkc1	92	81.149	ENSPPRG00000009104	DKC1	79	85.856	Panthera_pardus
ENSCSEG00000012633	dkc1	89	82.353	ENSPTIG00000017469	DKC1	92	78.308	Panthera_tigris_altaica
ENSCSEG00000012633	dkc1	93	80.822	ENSPTRG00000022449	DKC1	92	76.409	Pan_troglodytes
ENSCSEG00000012633	dkc1	93	80.455	ENSPTRG00000043416	-	80	76.409	Pan_troglodytes
ENSCSEG00000012633	dkc1	90	79.412	ENSPANG00000011978	DKC1	92	76.200	Papio_anubis
ENSCSEG00000012633	dkc1	97	81.659	ENSPKIG00000008443	dkc1	99	81.474	Paramormyrops_kingsleyae
ENSCSEG00000012633	dkc1	76	90.223	ENSPSIG00000013765	DKC1	86	90.223	Pelodiscus_sinensis
ENSCSEG00000012633	dkc1	85	86.432	ENSPMGG00000004097	dkc1	74	86.420	Periophthalmus_magnuspinnatus
ENSCSEG00000012633	dkc1	67	86.207	ENSPEMG00000013348	Dkc1	84	85.484	Peromyscus_maniculatus_bairdii
ENSCSEG00000012633	dkc1	85	85.678	ENSPCIG00000016706	DKC1	68	85.149	Phascolarctos_cinereus
ENSCSEG00000012633	dkc1	90	87.991	ENSPFOG00000018653	dkc1	93	86.724	Poecilia_formosa
ENSCSEG00000012633	dkc1	90	87.991	ENSPLAG00000003272	dkc1	84	86.724	Poecilia_latipinna
ENSCSEG00000012633	dkc1	90	87.991	ENSPMEG00000010413	dkc1	94	85.744	Poecilia_mexicana
ENSCSEG00000012633	dkc1	90	87.529	ENSPREG00000004100	dkc1	92	86.170	Poecilia_reticulata
ENSCSEG00000012633	dkc1	90	79.638	ENSPPYG00000020892	DKC1	93	76.409	Pongo_abelii
ENSCSEG00000012633	dkc1	77	87.845	ENSPCAG00000015034	DKC1	71	87.845	Procavia_capensis
ENSCSEG00000012633	dkc1	94	80.000	ENSPCOG00000026874	DKC1	93	75.783	Propithecus_coquereli
ENSCSEG00000012633	dkc1	89	81.967	ENSPVAG00000009222	DKC1	93	78.448	Pteropus_vampyrus
ENSCSEG00000012633	dkc1	85	92.481	ENSPNYG00000020063	dkc1	95	84.728	Pundamilia_nyererei
ENSCSEG00000012633	dkc1	95	82.511	ENSPNAG00000005780	dkc1	95	82.008	Pygocentrus_nattereri
ENSCSEG00000012633	dkc1	95	74.627	ENSRNOG00000055562	Dkc1	92	73.109	Rattus_norvegicus
ENSCSEG00000012633	dkc1	90	79.412	ENSRBIG00000028457	DKC1	80	76.200	Rhinopithecus_bieti
ENSCSEG00000012633	dkc1	90	79.412	ENSRROG00000044780	DKC1	92	76.200	Rhinopithecus_roxellana
ENSCSEG00000012633	dkc1	81	70.757	YLR175W	-	88	65.340	Saccharomyces_cerevisiae
ENSCSEG00000012633	dkc1	94	79.730	ENSSBOG00000033746	DKC1	86	79.326	Saimiri_boliviensis_boliviensis
ENSCSEG00000012633	dkc1	95	79.333	ENSSHAG00000002463	DKC1	85	85.360	Sarcophilus_harrisii
ENSCSEG00000012633	dkc1	85	89.698	ENSSFOG00015009585	dkc1	79	89.578	Scleropages_formosus
ENSCSEG00000012633	dkc1	90	89.535	ENSSMAG00000002552	dkc1	92	86.325	Scophthalmus_maximus
ENSCSEG00000012633	dkc1	96	85.870	ENSSDUG00000009963	dkc1	93	85.957	Seriola_dumerili
ENSCSEG00000012633	dkc1	96	86.344	ENSSLDG00000019342	dkc1	95	86.422	Seriola_lalandi_dorsalis
ENSCSEG00000012633	dkc1	96	73.404	ENSSARG00000001822	DKC1	95	73.053	Sorex_araneus
ENSCSEG00000012633	dkc1	84	86.616	ENSSPUG00000018907	DKC1	77	85.608	Sphenodon_punctatus
ENSCSEG00000012633	dkc1	97	88.034	ENSSPAG00000002585	dkc1	90	87.605	Stegastes_partitus
ENSCSEG00000012633	dkc1	85	86.181	ENSSSCG00000012823	DKC1	84	85.608	Sus_scrofa
ENSCSEG00000012633	dkc1	87	83.333	ENSTGUG00000006781	DKC1	95	80.549	Taeniopygia_guttata
ENSCSEG00000012633	dkc1	96	84.749	ENSTRUG00000004413	dkc1	94	83.974	Takifugu_rubripes
ENSCSEG00000012633	dkc1	89	70.991	ENSTNIG00000002582	dkc1	84	70.698	Tetraodon_nigroviridis
ENSCSEG00000012633	dkc1	65	78.033	ENSTBEG00000011262	DKC1	74	85.130	Tupaia_belangeri
ENSCSEG00000012633	dkc1	59	88.087	ENSTTRG00000008089	DKC1	55	88.087	Tursiops_truncatus
ENSCSEG00000012633	dkc1	96	78.936	ENSUAMG00000022721	DKC1	87	83.095	Ursus_americanus
ENSCSEG00000012633	dkc1	96	78.271	ENSUMAG00000016899	DKC1	96	85.714	Ursus_maritimus
ENSCSEG00000012633	dkc1	96	76.957	ENSVVUG00000020734	-	84	73.077	Vulpes_vulpes
ENSCSEG00000012633	dkc1	84	71.212	ENSVVUG00000021671	-	75	70.197	Vulpes_vulpes
ENSCSEG00000012633	dkc1	92	81.818	ENSXETG00000032517	DKC1	79	89.367	Xenopus_tropicalis
ENSCSEG00000012633	dkc1	91	87.872	ENSXCOG00000005498	dkc1	99	87.174	Xiphophorus_couchianus
ENSCSEG00000012633	dkc1	90	87.816	ENSXMAG00000004919	dkc1	95	85.624	Xiphophorus_maculatus