EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000012726 (Gene tree)
Gene ID
103395242
Gene Symbol
RPA1 (1 of many)
Alias
HSSB|REPA1|RF-A|RP-A|RPA70
Full Name
replication protein A 70 kDa DNA-binding subunit-like
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Plus strand
Length
30204 bases
Position
chr19:10634740-10664943
Accession
103395242
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000019947tRNA_anti-codonPF01336.252.8e-1311
ENSCSEP00000019935tRNA_anti-codonPF01336.255.1e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000020180RPA1 (1 of many)-2012502-ENSCSEP00000019935589 (aa)--
ENSCSET00000020192RPA1 (1 of many)-2022538XM_008332899ENSCSEP00000019947633 (aa)XP_008331121UPI000494FDA6
Gene Model
Click here to download ENSCSEG00000012726's gene model file
Pathways
Pathway IDPathway NameSource
csem03030DNA replicationKEGG
csem03420Nucleotide excision repairKEGG
csem03430Mismatch repairKEGG
csem03440Homologous recombinationKEGG
csem03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012726's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000012726RPA19954.966ENSCSEG00000013066rpa19954.080
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000012726RPA19956.089ENSAPOG00000011658rpa19955.330Acanthochromis_polyacanthus
ENSCSEG00000012726RPA19963.369ENSAPOG00000019409RPA110062.808Acanthochromis_polyacanthus
ENSCSEG00000012726RPA19853.912ENSAMEG00000007706RPA19552.778Ailuropoda_melanoleuca
ENSCSEG00000012726RPA19969.374ENSACIG00000012881RPA19968.473Amphilophus_citrinellus
ENSCSEG00000012726RPA19950.257ENSACIG00000007277rpa19949.088Amphilophus_citrinellus
ENSCSEG00000012726RPA19956.799ENSAOCG00000023376rpa19955.627Amphiprion_ocellaris
ENSCSEG00000012726RPA19966.393ENSAOCG00000009003RPA110066.208Amphiprion_ocellaris
ENSCSEG00000012726RPA19966.290ENSAPEG00000019132RPA110065.964Amphiprion_percula
ENSCSEG00000012726RPA19956.186ENSAPEG00000008634rpa19955.236Amphiprion_percula
ENSCSEG00000012726RPA19968.750ENSATEG00000006443RPA110068.098Anabas_testudineus
ENSCSEG00000012726RPA19955.670ENSATEG00000022024rpa19955.330Anabas_testudineus
ENSCSEG00000012726RPA19847.344ENSAPLG00000012442RPA19946.965Anas_platyrhynchos
ENSCSEG00000012726RPA19947.297ENSACAG00000014490RPA19947.544Anolis_carolinensis
ENSCSEG00000012726RPA19954.003ENSANAG00000023456RPA19853.191Aotus_nancymaae
ENSCSEG00000012726RPA19957.338ENSACLG00000006640rpa19957.338Astatotilapia_calliptera
ENSCSEG00000012726RPA19967.667ENSACLG00000005223RPA19966.615Astatotilapia_calliptera
ENSCSEG00000012726RPA19956.027ENSAMXG00000008418rpa19955.981Astyanax_mexicanus
ENSCSEG00000012726RPA19853.082ENSBTAG00000009711RPA19951.603Bos_taurus
ENSCSEG00000012726RPA19952.560ENSCJAG00000001848RPA19950.786Callithrix_jacchus
ENSCSEG00000012726RPA19852.650ENSCAFG00000019249RPA19951.675Canis_familiaris
ENSCSEG00000012726RPA19852.650ENSCAFG00020009847RPA19951.675Canis_lupus_dingo
ENSCSEG00000012726RPA19851.701ENSCHIG00000026308RPA19951.597Capra_hircus
ENSCSEG00000012726RPA19853.093ENSTSYG00000003482-9950.949Carlito_syrichta
ENSCSEG00000012726RPA19853.253ENSCPOG00000000035RPA19951.429Cavia_porcellus
ENSCSEG00000012726RPA19941.582ENSCCAG00000010981RPA19942.097Cebus_capucinus
ENSCSEG00000012726RPA19849.231ENSCLAG00000015045-9947.943Chinchilla_lanigera
ENSCSEG00000012726RPA19853.767ENSCLAG00000005185-9951.659Chinchilla_lanigera
ENSCSEG00000012726RPA19942.296ENSCSAG00000013833RPA19942.138Chlorocebus_sabaeus
ENSCSEG00000012726RPA17361.290ENSCHOG00000009454-9961.290Choloepus_hoffmanni
ENSCSEG00000012726RPA19852.730ENSCHOG00000013540-9752.445Choloepus_hoffmanni
ENSCSEG00000012726RPA19853.820ENSCPBG00000020377RPA19953.898Chrysemys_picta_bellii
ENSCSEG00000012726RPA19842.222ENSCING00000023482-9942.105Ciona_intestinalis
ENSCSEG00000012726RPA19952.740ENSCANG00000030911RPA19851.809Colobus_angolensis_palliatus
ENSCSEG00000012726RPA19853.265ENSCGRG00001008197Rpa19952.000Cricetulus_griseus_chok1gshd
ENSCSEG00000012726RPA18356.301ENSCGRG00000000582Rpa19954.545Cricetulus_griseus_crigri
ENSCSEG00000012726RPA19956.873ENSCVAG00000019431rpa19956.678Cyprinodon_variegatus
ENSCSEG00000012726RPA19564.618ENSCVAG00000013446-9663.101Cyprinodon_variegatus
ENSCSEG00000012726RPA19956.701ENSDARG00000003938rpa19955.183Danio_rerio
ENSCSEG00000012726RPA19853.608ENSDNOG00000017218RPA19852.258Dasypus_novemcinctus
ENSCSEG00000012726RPA19853.265ENSDORG00000006199Rpa19951.752Dipodomys_ordii
ENSCSEG00000012726RPA19935.871FBgn0010173RpA-709935.918Drosophila_melanogaster
ENSCSEG00000012726RPA18263.830ENSETEG00000017608RPA18263.830Echinops_telfairi
ENSCSEG00000012726RPA19853.608ENSEASG00005009372RPA19851.689Equus_asinus_asinus
ENSCSEG00000012726RPA19852.811ENSECAG00000023886RPA19951.510Equus_caballus
ENSCSEG00000012726RPA17061.538ENSEEUG00000002186-6861.538Erinaceus_europaeus
ENSCSEG00000012726RPA17167.386ENSELUG00000006136RPA19956.093Esox_lucius
ENSCSEG00000012726RPA19957.167ENSELUG00000021071rpa19956.329Esox_lucius
ENSCSEG00000012726RPA19853.333ENSFCAG00000006306RPA19952.153Felis_catus
ENSCSEG00000012726RPA19853.162ENSFALG00000006575RPA19952.208Ficedula_albicollis
ENSCSEG00000012726RPA19852.470ENSFDAG00000007720RPA19950.869Fukomys_damarensis
ENSCSEG00000012726RPA19957.216ENSFHEG00000003580rpa19956.160Fundulus_heteroclitus
ENSCSEG00000012726RPA19954.733ENSGMOG00000010382rpa19953.440Gadus_morhua
ENSCSEG00000012726RPA19853.596ENSGALG00000003072RPA19952.941Gallus_gallus
ENSCSEG00000012726RPA19965.139ENSGAFG00000020953RPA19965.138Gambusia_affinis
ENSCSEG00000012726RPA19957.045ENSGAFG00000012916rpa19955.929Gambusia_affinis
ENSCSEG00000012726RPA19955.670ENSGACG00000010856rpa19954.735Gasterosteus_aculeatus
ENSCSEG00000012726RPA19853.820ENSGAGG00000013611RPA19952.524Gopherus_agassizii
ENSCSEG00000012726RPA19852.830ENSGGOG00000014186RPA19951.196Gorilla_gorilla
ENSCSEG00000012726RPA19958.662ENSHBUG00000017773rpa19957.051Haplochromis_burtoni
ENSCSEG00000012726RPA19957.534ENSHBUG00000009348RPA19856.977Haplochromis_burtoni
ENSCSEG00000012726RPA19852.129ENSHGLG00000008846RPA19951.675Heterocephalus_glaber_female
ENSCSEG00000012726RPA19850.000ENSHGLG00100000799-9948.494Heterocephalus_glaber_male
ENSCSEG00000012726RPA19844.710ENSHGLG00100002005-9944.391Heterocephalus_glaber_male
ENSCSEG00000012726RPA19852.129ENSHGLG00100017755-9951.675Heterocephalus_glaber_male
ENSCSEG00000012726RPA19848.034ENSHCOG00000000351RPA19854.933Hippocampus_comes
ENSCSEG00000012726RPA19952.921ENSHCOG00000001401rpa19953.045Hippocampus_comes
ENSCSEG00000012726RPA19857.858ENSIPUG00000004400rpa110056.369Ictalurus_punctatus
ENSCSEG00000012726RPA19751.557ENSSTOG00000022475RPA19451.712Ictidomys_tridecemlineatus
ENSCSEG00000012726RPA19852.659ENSJJAG00000000876Rpa19552.659Jaculus_jaculus
ENSCSEG00000012726RPA19954.872ENSKMAG00000005605rpa19954.213Kryptolebias_marmoratus
ENSCSEG00000012726RPA19965.195ENSKMAG00000000234RPA19963.249Kryptolebias_marmoratus
ENSCSEG00000012726RPA19955.366ENSLBEG00000021604rpa19954.473Labrus_bergylta
ENSCSEG00000012726RPA19962.424ENSLBEG00000002281RPA19961.506Labrus_bergylta
ENSCSEG00000012726RPA17855.072ENSLACG00000007210RPA19953.678Latimeria_chalumnae
ENSCSEG00000012726RPA19954.017ENSLOCG00000006397rpa19953.333Lepisosteus_oculatus
ENSCSEG00000012726RPA19852.324ENSLAFG00000015354RPA19950.720Loxodonta_africana
ENSCSEG00000012726RPA18250.610ENSMFAG00000036138-9849.612Macaca_fascicularis
ENSCSEG00000012726RPA19950.685ENSMMUG00000002442-9948.730Macaca_mulatta
ENSCSEG00000012726RPA19952.542ENSMMUG00000011604-9951.115Macaca_mulatta
ENSCSEG00000012726RPA19952.373ENSMNEG00000031632-9652.013Macaca_nemestrina
ENSCSEG00000012726RPA17556.726ENSMNEG00000029837-8156.726Macaca_nemestrina
ENSCSEG00000012726RPA19949.073ENSMLEG00000038768-9849.103Mandrillus_leucophaeus
ENSCSEG00000012726RPA19956.014ENSMAMG00000017993rpa19954.992Mastacembelus_armatus
ENSCSEG00000012726RPA19965.869ENSMAMG00000020097RPA19965.425Mastacembelus_armatus
ENSCSEG00000012726RPA19958.662ENSMZEG00005007551rpa19957.051Maylandia_zebra
ENSCSEG00000012726RPA19967.667ENSMZEG00005024731RPA19966.615Maylandia_zebra
ENSCSEG00000012726RPA19853.425ENSMGAG00000005315RPA19852.412Meleagris_gallopavo
ENSCSEG00000012726RPA19853.436ENSMAUG00000010474Rpa19853.048Mesocricetus_auratus
ENSCSEG00000012726RPA19953.675ENSMICG00000012867RPA19952.139Microcebus_murinus
ENSCSEG00000012726RPA19851.630ENSMOCG00000013019Rpa19949.921Microtus_ochrogaster
ENSCSEG00000012726RPA19955.918ENSMMOG00000014292rpa19955.354Mola_mola
ENSCSEG00000012726RPA19964.726ENSMMOG00000010868RPA19871.101Mola_mola
ENSCSEG00000012726RPA19854.124ENSMODG00000010549RPA19952.389Monodelphis_domestica
ENSCSEG00000012726RPA19960.534ENSMALG00000001208RPA19972.784Monopterus_albus
ENSCSEG00000012726RPA19956.357ENSMALG00000011453rpa19954.647Monopterus_albus
ENSCSEG00000012726RPA19853.012MGP_CAROLIEiJ_G0016734Rpa19952.083Mus_caroli
ENSCSEG00000012726RPA19852.749ENSMUSG00000000751Rpa19951.043Mus_musculus
ENSCSEG00000012726RPA19853.012MGP_PahariEiJ_G0017871Rpa19951.846Mus_pahari
ENSCSEG00000012726RPA19853.173MGP_SPRETEiJ_G0017577Rpa19951.442Mus_spretus
ENSCSEG00000012726RPA19853.265ENSMPUG00000013119RPA19951.923Mustela_putorius_furo
ENSCSEG00000012726RPA19853.952ENSMLUG00000006113RPA19951.735Myotis_lucifugus
ENSCSEG00000012726RPA19853.767ENSNGAG00000004522Rpa19153.767Nannospalax_galili
ENSCSEG00000012726RPA19963.543ENSNBRG00000009672RPA19762.761Neolamprologus_brichardi
ENSCSEG00000012726RPA19956.997ENSNBRG00000020595rpa19956.566Neolamprologus_brichardi
ENSCSEG00000012726RPA19853.322ENSNLEG00000017149RPA19952.866Nomascus_leucogenys
ENSCSEG00000012726RPA19847.079ENSMEUG00000006714RPA19746.205Notamacropus_eugenii
ENSCSEG00000012726RPA19852.496ENSODEG00000009038RPA19452.632Octodon_degus
ENSCSEG00000012726RPA19957.850ENSONIG00000013135rpa19956.230Oreochromis_niloticus
ENSCSEG00000012726RPA19852.027ENSOANG00000010880RPA19951.303Ornithorhynchus_anatinus
ENSCSEG00000012726RPA19850.990ENSOCUG00000001504RPA19949.768Oryctolagus_cuniculus
ENSCSEG00000012726RPA19956.110ENSORLG00000004856rpa19954.662Oryzias_latipes
ENSCSEG00000012726RPA19966.066ENSORLG00000003368RPA19965.291Oryzias_latipes
ENSCSEG00000012726RPA19956.282ENSORLG00020008980rpa19954.823Oryzias_latipes_hni
ENSCSEG00000012726RPA19964.469ENSORLG00020015284RPA19963.814Oryzias_latipes_hni
ENSCSEG00000012726RPA17470.481ENSORLG00015005867-9970.481Oryzias_latipes_hsok
ENSCSEG00000012726RPA19956.282ENSORLG00015013982rpa19954.823Oryzias_latipes_hsok
ENSCSEG00000012726RPA19965.391ENSORLG00015020383RPA19964.506Oryzias_latipes_hsok
ENSCSEG00000012726RPA19962.306ENSOMEG00000011040RPA19961.655Oryzias_melastigma
ENSCSEG00000012726RPA19954.733ENSOMEG00000004704rpa19953.933Oryzias_melastigma
ENSCSEG00000012726RPA19853.859ENSOGAG00000005581-9952.305Otolemur_garnettii
ENSCSEG00000012726RPA17463.277ENSOGAG00000029379-9763.277Otolemur_garnettii
ENSCSEG00000012726RPA19851.448ENSOARG00000014479RPA19951.597Ovis_aries
ENSCSEG00000012726RPA19852.811ENSPPAG00000039680RPA19952.866Pan_paniscus
ENSCSEG00000012726RPA19853.436ENSPPRG00000011807RPA19952.070Panthera_pardus
ENSCSEG00000012726RPA19853.436ENSPTIG00000007898RPA19952.244Panthera_tigris_altaica
ENSCSEG00000012726RPA19852.811ENSPTRG00000008539RPA19952.866Pan_troglodytes
ENSCSEG00000012726RPA19952.712ENSPANG00000024592RPA19951.101Papio_anubis
ENSCSEG00000012726RPA19456.000ENSPKIG00000008053rpa19456.208Paramormyrops_kingsleyae
ENSCSEG00000012726RPA19853.152ENSPSIG00000015617RPA19852.295Pelodiscus_sinensis
ENSCSEG00000012726RPA19956.014ENSPMGG00000011589rpa19655.330Periophthalmus_magnuspinnatus
ENSCSEG00000012726RPA19962.457ENSPMGG00000000543RPA110062.162Periophthalmus_magnuspinnatus
ENSCSEG00000012726RPA19853.093ENSPEMG00000021061Rpa19951.763Peromyscus_maniculatus_bairdii
ENSCSEG00000012726RPA19852.971ENSPCIG00000019049RPA19951.994Phascolarctos_cinereus
ENSCSEG00000012726RPA19957.045ENSPFOG00000003987rpa19955.449Poecilia_formosa
ENSCSEG00000012726RPA19957.216ENSPLAG00000004984rpa19955.609Poecilia_latipinna
ENSCSEG00000012726RPA19464.019ENSPLAG00000008844-9764.019Poecilia_latipinna
ENSCSEG00000012726RPA19463.857ENSPMEG00000003627-9764.506Poecilia_mexicana
ENSCSEG00000012726RPA19957.045ENSPMEG00000020602rpa19957.045Poecilia_mexicana
ENSCSEG00000012726RPA19351.730ENSPREG00000010174rpa19550.769Poecilia_reticulata
ENSCSEG00000012726RPA19963.492ENSPREG00000010119RPA19963.001Poecilia_reticulata
ENSCSEG00000012726RPA19853.608ENSPCOG00000001799RPA19951.752Propithecus_coquereli
ENSCSEG00000012726RPA19853.436ENSPVAG00000002149RPA19952.070Pteropus_vampyrus
ENSCSEG00000012726RPA19958.834ENSPNYG00000016316rpa19957.338Pundamilia_nyererei
ENSCSEG00000012726RPA19968.167ENSPNYG00000024165RPA19967.081Pundamilia_nyererei
ENSCSEG00000012726RPA19950.514ENSPNAG00000008599rpa19949.048Pygocentrus_nattereri
ENSCSEG00000012726RPA19856.872ENSRNOG00000003123Rpa19952.006Rattus_norvegicus
ENSCSEG00000012726RPA19953.390ENSRBIG00000036587RPA19951.572Rhinopithecus_bieti
ENSCSEG00000012726RPA19949.492ENSRROG00000043278RPA19947.956Rhinopithecus_roxellana
ENSCSEG00000012726RPA19831.818YAR007CRFA19931.818Saccharomyces_cerevisiae
ENSCSEG00000012726RPA19751.979ENSSBOG00000030233RPA19753.899Saimiri_boliviensis_boliviensis
ENSCSEG00000012726RPA19854.217ENSSHAG00000007969RPA19753.710Sarcophilus_harrisii
ENSCSEG00000012726RPA19959.316ENSSFOG00015005362rpa19257.937Scleropages_formosus
ENSCSEG00000012726RPA19967.585ENSSMAG00000019746RPA110067.020Scophthalmus_maximus
ENSCSEG00000012726RPA19956.014ENSSDUG00000011949rpa19954.735Seriola_dumerili
ENSCSEG00000012726RPA19966.509ENSSDUG00000016358RPA110066.765Seriola_dumerili
ENSCSEG00000012726RPA19965.835ENSSLDG00000020784RPA110065.693Seriola_lalandi_dorsalis
ENSCSEG00000012726RPA19955.842ENSSLDG00000011806rpa19954.968Seriola_lalandi_dorsalis
ENSCSEG00000012726RPA18566.667ENSSARG00000007506RPA19842.741Sorex_araneus
ENSCSEG00000012726RPA19851.877ENSSPUG00000007223RPA19951.133Sphenodon_punctatus
ENSCSEG00000012726RPA19956.089ENSSPAG00000009903rpa19954.968Stegastes_partitus
ENSCSEG00000012726RPA19967.526ENSSPAG00000011165RPA110064.434Stegastes_partitus
ENSCSEG00000012726RPA19852.668ENSSSCG00000017822RPA19852.970Sus_scrofa
ENSCSEG00000012726RPA19853.253ENSTGUG00000005775RPA19952.229Taeniopygia_guttata
ENSCSEG00000012726RPA19859.641ENSTRUG00000000405RPA19958.766Takifugu_rubripes
ENSCSEG00000012726RPA19856.432ENSTRUG00000003616rpa19955.305Takifugu_rubripes
ENSCSEG00000012726RPA19957.118ENSTNIG00000016199rpa19956.051Tetraodon_nigroviridis
ENSCSEG00000012726RPA17361.060ENSTBEG00000002709RPA17361.060Tupaia_belangeri
ENSCSEG00000012726RPA19853.436ENSTTRG00000001169RPA19952.083Tursiops_truncatus
ENSCSEG00000012726RPA18871.154ENSUAMG00000015676RPA19771.154Ursus_americanus
ENSCSEG00000012726RPA19853.093ENSUMAG00000009328RPA19952.229Ursus_maritimus
ENSCSEG00000012726RPA19850.767ENSVPAG00000009443RPA19849.600Vicugna_pacos
ENSCSEG00000012726RPA19852.811ENSVVUG00000021715RPA19951.828Vulpes_vulpes
ENSCSEG00000012726RPA19953.425ENSXETG00000013538rpa19952.313Xenopus_tropicalis
ENSCSEG00000012726RPA19964.444ENSXCOG00000009899-9963.773Xiphophorus_couchianus
ENSCSEG00000012726RPA19355.273ENSXCOG00000010068rpa19454.017Xiphophorus_couchianus
ENSCSEG00000012726RPA19956.701ENSXMAG00000004102rpa19956.701Xiphophorus_maculatus
ENSCSEG00000012726RPA19960.086ENSXMAG00000010333RPA19960.515Xiphophorus_maculatus

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