EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012757 (Gene tree)
Gene ID: 103395245
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 153080 bases
Position: chr19:10695938-10849017
Accession: 103395245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000020026	EST1	PF10374.9	3.9e-14	1	1
ENSCSEP00000020048	EST1	PF10374.9	4.2e-14	1	1
ENSCSEP00000020007	EST1	PF10374.9	4.3e-14	1	1
ENSCSEP00000020048	EST1_DNA_bind	PF10373.9	8.4e-57	1	1
ENSCSEP00000020007	EST1_DNA_bind	PF10373.9	8.8e-57	1	1
ENSCSEP00000020026	EST1_DNA_bind	PF10373.9	9.6e-57	1	1
ENSCSEP00000020048	PIN_4	PF13638.6	4.5e-22	1	1
ENSCSEP00000020007	PIN_4	PF13638.6	4.4e-21	1	1
ENSCSEP00000020026	PIN_4	PF13638.6	4.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000020294	-	4590	-	ENSCSEP00000020048	1529 (aa)	-	-
ENSCSET00000020254	-	8609	-	ENSCSEP00000020007	1563 (aa)	-	-
ENSCSET00000020273	-	7961	XM_008332903	ENSCSEP00000020026	1637 (aa)	XP_008331125	UPI000496C847

Gene Model

Click here to download ENSCSEG00000012757's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012757's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012757	smg6	80	53.569	ENSG00000070366	SMG6	100	61.017	Homo_sapiens
ENSCSEG00000012757	smg6	100	71.300	ENSAPOG00000019448	smg6	100	71.660	Acanthochromis_polyacanthus
ENSCSEG00000012757	smg6	89	53.153	ENSAMEG00000007632	SMG6	98	53.203	Ailuropoda_melanoleuca
ENSCSEG00000012757	smg6	97	68.963	ENSACIG00000012997	smg6	99	68.504	Amphilophus_citrinellus
ENSCSEG00000012757	smg6	100	71.780	ENSAOCG00000002630	smg6	95	72.320	Amphiprion_ocellaris
ENSCSEG00000012757	smg6	100	71.360	ENSAPEG00000019101	smg6	95	71.879	Amphiprion_percula
ENSCSEG00000012757	smg6	100	70.156	ENSATEG00000006483	smg6	100	70.240	Anabas_testudineus
ENSCSEG00000012757	smg6	65	49.904	ENSACAG00000011783	SMG6	81	50.096	Anolis_carolinensis
ENSCSEG00000012757	smg6	81	53.615	ENSANAG00000035760	SMG6	86	52.941	Aotus_nancymaae
ENSCSEG00000012757	smg6	100	68.765	ENSACLG00000005288	smg6	99	70.485	Astatotilapia_calliptera
ENSCSEG00000012757	smg6	71	67.670	ENSAMXG00000017326	smg6	88	66.760	Astyanax_mexicanus
ENSCSEG00000012757	smg6	94	49.004	ENSBTAG00000000267	SMG6	86	52.857	Bos_taurus
ENSCSEG00000012757	smg6	92	52.268	ENSCJAG00000001820	SMG6	86	58.394	Callithrix_jacchus
ENSCSEG00000012757	smg6	81	54.328	ENSCAFG00000019260	SMG6	86	54.273	Canis_familiaris
ENSCSEG00000012757	smg6	81	54.328	ENSCAFG00020009770	SMG6	86	54.273	Canis_lupus_dingo
ENSCSEG00000012757	smg6	94	49.232	ENSCHIG00000021998	SMG6	86	52.893	Capra_hircus
ENSCSEG00000012757	smg6	91	53.017	ENSTSYG00000003406	SMG6	100	60.829	Carlito_syrichta
ENSCSEG00000012757	smg6	74	55.742	ENSCAPG00000016197	SMG6	85	55.742	Cavia_aperea
ENSCSEG00000012757	smg6	90	51.437	ENSCPOG00000014878	SMG6	95	56.780	Cavia_porcellus
ENSCSEG00000012757	smg6	82	52.576	ENSCCAG00000035801	SMG6	86	53.419	Cebus_capucinus
ENSCSEG00000012757	smg6	93	52.059	ENSCATG00000031956	SMG6	100	52.139	Cercocebus_atys
ENSCSEG00000012757	smg6	90	52.171	ENSCLAG00000006748	SMG6	99	52.177	Chinchilla_lanigera
ENSCSEG00000012757	smg6	83	52.426	ENSCSAG00000013800	SMG6	87	53.544	Chlorocebus_sabaeus
ENSCSEG00000012757	smg6	90	54.984	ENSCPBG00000020369	SMG6	99	54.862	Chrysemys_picta_bellii
ENSCSEG00000012757	smg6	82	53.283	ENSCANG00000031764	SMG6	100	61.017	Colobus_angolensis_palliatus
ENSCSEG00000012757	smg6	83	48.604	ENSCGRG00000007782	Smg6	89	49.057	Cricetulus_griseus_crigri
ENSCSEG00000012757	smg6	100	63.343	ENSCVAG00000012789	smg6	100	64.221	Cyprinodon_variegatus
ENSCSEG00000012757	smg6	100	55.993	ENSDARG00000100481	smg6	100	56.404	Danio_rerio
ENSCSEG00000012757	smg6	78	54.604	ENSDNOG00000048283	SMG6	86	53.822	Dasypus_novemcinctus
ENSCSEG00000012757	smg6	94	47.037	ENSDORG00000016614	Smg6	100	49.246	Dipodomys_ordii
ENSCSEG00000012757	smg6	82	87.500	ENSETEG00000016790	SMG6	91	87.500	Echinops_telfairi
ENSCSEG00000012757	smg6	62	47.628	ENSEBUG00000005059	smg6	63	47.633	Eptatretus_burgeri
ENSCSEG00000012757	smg6	81	53.811	ENSEASG00005009318	SMG6	86	54.314	Equus_asinus_asinus
ENSCSEG00000012757	smg6	81	53.894	ENSECAG00000006519	SMG6	86	54.314	Equus_caballus
ENSCSEG00000012757	smg6	79	46.635	ENSEEUG00000003493	SMG6	85	46.557	Erinaceus_europaeus
ENSCSEG00000012757	smg6	94	62.697	ENSELUG00000005934	smg6	86	65.634	Esox_lucius
ENSCSEG00000012757	smg6	80	53.647	ENSFCAG00000028817	SMG6	85	54.902	Felis_catus
ENSCSEG00000012757	smg6	78	55.887	ENSFALG00000006538	SMG6	84	55.715	Ficedula_albicollis
ENSCSEG00000012757	smg6	80	54.144	ENSFDAG00000015106	SMG6	88	58.559	Fukomys_damarensis
ENSCSEG00000012757	smg6	100	64.311	ENSFHEG00000013282	smg6	100	65.120	Fundulus_heteroclitus
ENSCSEG00000012757	smg6	81	52.888	ENSGALG00000003108	SMG6	97	52.252	Gallus_gallus
ENSCSEG00000012757	smg6	100	63.919	ENSGAFG00000000379	smg6	100	64.456	Gambusia_affinis
ENSCSEG00000012757	smg6	87	79.070	ENSGACG00000020521	smg6	99	79.070	Gasterosteus_aculeatus
ENSCSEG00000012757	smg6	78	55.466	ENSGAGG00000025617	SMG6	84	55.270	Gopherus_agassizii
ENSCSEG00000012757	smg6	93	52.059	ENSGGOG00000017156	SMG6	100	52.413	Gorilla_gorilla
ENSCSEG00000012757	smg6	100	69.476	ENSHBUG00000021311	smg6	100	69.055	Haplochromis_burtoni
ENSCSEG00000012757	smg6	78	54.769	ENSHGLG00000012882	SMG6	89	58.744	Heterocephalus_glaber_female
ENSCSEG00000012757	smg6	82	53.283	ENSHGLG00100017815	SMG6	89	58.744	Heterocephalus_glaber_male
ENSCSEG00000012757	smg6	68	69.340	ENSHCOG00000008761	smg6	83	69.717	Hippocampus_comes
ENSCSEG00000012757	smg6	100	53.988	ENSIPUG00000012493	smg6	100	53.535	Ictalurus_punctatus
ENSCSEG00000012757	smg6	91	52.474	ENSSTOG00000028127	SMG6	100	52.370	Ictidomys_tridecemlineatus
ENSCSEG00000012757	smg6	68	49.899	ENSJJAG00000015367	Smg6	90	48.917	Jaculus_jaculus
ENSCSEG00000012757	smg6	99	67.094	ENSKMAG00000000279	smg6	100	66.667	Kryptolebias_marmoratus
ENSCSEG00000012757	smg6	100	70.084	ENSLBEG00000002184	smg6	100	69.604	Labrus_bergylta
ENSCSEG00000012757	smg6	70	65.461	ENSLOCG00000006448	smg6	99	55.369	Lepisosteus_oculatus
ENSCSEG00000012757	smg6	81	53.113	ENSLAFG00000001261	SMG6	86	53.190	Loxodonta_africana
ENSCSEG00000012757	smg6	83	52.500	ENSMFAG00000003394	SMG6	87	53.620	Macaca_fascicularis
ENSCSEG00000012757	smg6	83	52.279	ENSMMUG00000023161	SMG6	87	53.394	Macaca_mulatta
ENSCSEG00000012757	smg6	95	46.898	ENSMNEG00000044592	SMG6	87	51.632	Macaca_nemestrina
ENSCSEG00000012757	smg6	77	62.088	ENSMLEG00000029353	SMG6	88	61.957	Mandrillus_leucophaeus
ENSCSEG00000012757	smg6	100	70.616	ENSMAMG00000020119	smg6	99	71.641	Mastacembelus_armatus
ENSCSEG00000012757	smg6	100	68.645	ENSMZEG00005024736	smg6	100	68.885	Maylandia_zebra
ENSCSEG00000012757	smg6	57	49.525	ENSMGAG00000005401	-	82	49.632	Meleagris_gallopavo
ENSCSEG00000012757	smg6	80	54.219	ENSMICG00000012913	SMG6	85	54.375	Microcebus_murinus
ENSCSEG00000012757	smg6	99	66.257	ENSMMOG00000010883	smg6	100	64.089	Mola_mola
ENSCSEG00000012757	smg6	90	52.385	ENSMODG00000010622	SMG6	83	58.318	Monodelphis_domestica
ENSCSEG00000012757	smg6	100	69.562	ENSMALG00000001106	smg6	100	68.955	Monopterus_albus
ENSCSEG00000012757	smg6	93	51.497	MGP_CAROLIEiJ_G0016729	Smg6	96	63.483	Mus_caroli
ENSCSEG00000012757	smg6	90	52.065	ENSMUSG00000038290	Smg6	96	63.483	Mus_musculus
ENSCSEG00000012757	smg6	88	53.281	MGP_PahariEiJ_G0017866	Smg6	97	62.881	Mus_pahari
ENSCSEG00000012757	smg6	90	51.991	MGP_SPRETEiJ_G0017572	Smg6	96	63.202	Mus_spretus
ENSCSEG00000012757	smg6	80	54.743	ENSMPUG00000013046	SMG6	86	54.376	Mustela_putorius_furo
ENSCSEG00000012757	smg6	81	53.323	ENSMLUG00000005739	SMG6	88	53.476	Myotis_lucifugus
ENSCSEG00000012757	smg6	80	53.323	ENSNGAG00000007287	Smg6	89	58.744	Nannospalax_galili
ENSCSEG00000012757	smg6	98	68.579	ENSNBRG00000009511	smg6	99	69.312	Neolamprologus_brichardi
ENSCSEG00000012757	smg6	83	52.132	ENSNLEG00000017171	SMG6	100	61.017	Nomascus_leucogenys
ENSCSEG00000012757	smg6	82	52.632	ENSMEUG00000015804	SMG6	89	53.125	Notamacropus_eugenii
ENSCSEG00000012757	smg6	54	67.614	ENSOPRG00000000579	SMG6	81	57.143	Ochotona_princeps
ENSCSEG00000012757	smg6	83	46.549	ENSODEG00000008038	SMG6	98	46.460	Octodon_degus
ENSCSEG00000012757	smg6	100	69.005	ENSONIG00000005594	smg6	100	73.773	Oreochromis_niloticus
ENSCSEG00000012757	smg6	88	53.499	ENSOCUG00000013018	SMG6	99	52.964	Oryctolagus_cuniculus
ENSCSEG00000012757	smg6	100	63.842	ENSORLG00000003317	smg6	100	63.560	Oryzias_latipes
ENSCSEG00000012757	smg6	100	63.909	ENSORLG00020015343	smg6	100	63.309	Oryzias_latipes_hni
ENSCSEG00000012757	smg6	100	63.734	ENSORLG00015020454	smg6	100	63.435	Oryzias_latipes_hsok
ENSCSEG00000012757	smg6	99	65.703	ENSOMEG00000010838	smg6	100	64.363	Oryzias_melastigma
ENSCSEG00000012757	smg6	88	53.187	ENSOGAG00000004483	SMG6	83	58.690	Otolemur_garnettii
ENSCSEG00000012757	smg6	94	49.098	ENSOARG00000015076	SMG6	88	52.893	Ovis_aries
ENSCSEG00000012757	smg6	93	52.059	ENSPPAG00000043296	SMG6	100	51.944	Pan_paniscus
ENSCSEG00000012757	smg6	80	53.647	ENSPPRG00000014581	SMG6	85	55.059	Panthera_pardus
ENSCSEG00000012757	smg6	80	53.647	ENSPTIG00000008925	SMG6	100	61.205	Panthera_tigris_altaica
ENSCSEG00000012757	smg6	93	52.132	ENSPTRG00000008544	SMG6	100	61.017	Pan_troglodytes
ENSCSEG00000012757	smg6	82	53.399	ENSPANG00000024588	SMG6	87	53.747	Papio_anubis
ENSCSEG00000012757	smg6	80	53.227	ENSPSIG00000006660	SMG6	95	53.203	Pelodiscus_sinensis
ENSCSEG00000012757	smg6	94	78.445	ENSPMGG00000000844	smg6	99	76.294	Periophthalmus_magnuspinnatus
ENSCSEG00000012757	smg6	88	53.768	ENSPEMG00000020707	Smg6	97	57.322	Peromyscus_maniculatus_bairdii
ENSCSEG00000012757	smg6	100	65.706	ENSPFOG00000012035	smg6	96	72.174	Poecilia_formosa
ENSCSEG00000012757	smg6	100	65.285	ENSPLAG00000017660	smg6	100	65.343	Poecilia_latipinna
ENSCSEG00000012757	smg6	100	66.066	ENSPMEG00000000258	smg6	100	65.403	Poecilia_mexicana
ENSCSEG00000012757	smg6	100	64.886	ENSPREG00000010066	smg6	100	65.123	Poecilia_reticulata
ENSCSEG00000012757	smg6	82	49.437	ENSPPYG00000007790	SMG6	86	49.849	Pongo_abelii
ENSCSEG00000012757	smg6	76	62.679	ENSPCAG00000000552	SMG6	86	51.466	Procavia_capensis
ENSCSEG00000012757	smg6	87	52.914	ENSPCOG00000020925	SMG6	96	52.999	Propithecus_coquereli
ENSCSEG00000012757	smg6	78	50.703	ENSPVAG00000002159	SMG6	83	51.846	Pteropus_vampyrus
ENSCSEG00000012757	smg6	97	67.560	ENSPNYG00000024151	smg6	99	69.180	Pundamilia_nyererei
ENSCSEG00000012757	smg6	100	51.405	ENSPNAG00000015480	smg6	100	51.621	Pygocentrus_nattereri
ENSCSEG00000012757	smg6	93	51.696	ENSRNOG00000003041	Smg6	96	63.202	Rattus_norvegicus
ENSCSEG00000012757	smg6	82	53.434	ENSRBIG00000024746	SMG6	87	53.544	Rhinopithecus_bieti
ENSCSEG00000012757	smg6	82	53.434	ENSRROG00000030423	SMG6	100	61.017	Rhinopithecus_roxellana
ENSCSEG00000012757	smg6	82	53.135	ENSSBOG00000022518	SMG6	71	57.632	Saimiri_boliviensis_boliviensis
ENSCSEG00000012757	smg6	78	54.834	ENSSHAG00000010045	SMG6	83	55.068	Sarcophilus_harrisii
ENSCSEG00000012757	smg6	100	49.447	ENSSFOG00015005436	smg6	81	58.382	Scleropages_formosus
ENSCSEG00000012757	smg6	100	71.231	ENSSMAG00000019777	smg6	79	77.542	Scophthalmus_maximus
ENSCSEG00000012757	smg6	100	75.564	ENSSDUG00000016412	smg6	100	74.686	Seriola_dumerili
ENSCSEG00000012757	smg6	95	75.542	ENSSLDG00000020747	smg6	98	74.590	Seriola_lalandi_dorsalis
ENSCSEG00000012757	smg6	86	54.180	ENSSPUG00000007152	SMG6	94	53.840	Sphenodon_punctatus
ENSCSEG00000012757	smg6	100	71.617	ENSSPAG00000015633	smg6	100	71.497	Stegastes_partitus
ENSCSEG00000012757	smg6	81	54.253	ENSSSCG00000017826	SMG6	86	54.231	Sus_scrofa
ENSCSEG00000012757	smg6	78	55.323	ENSTGUG00000005836	SMG6	97	54.396	Taeniopygia_guttata
ENSCSEG00000012757	smg6	97	65.336	ENSTRUG00000000358	smg6	98	66.215	Takifugu_rubripes
ENSCSEG00000012757	smg6	89	74.777	ENSTNIG00000016164	smg6	98	75.831	Tetraodon_nigroviridis
ENSCSEG00000012757	smg6	88	50.391	ENSTBEG00000011424	SMG6	100	49.886	Tupaia_belangeri
ENSCSEG00000012757	smg6	72	57.247	ENSTTRG00000001175	SMG6	77	56.894	Tursiops_truncatus
ENSCSEG00000012757	smg6	81	53.994	ENSUAMG00000025152	SMG6	88	54.167	Ursus_americanus
ENSCSEG00000012757	smg6	81	53.752	ENSUMAG00000009306	SMG6	88	54.273	Ursus_maritimus
ENSCSEG00000012757	smg6	65	95.833	ENSVPAG00000000225	SMG6	72	95.833	Vicugna_pacos
ENSCSEG00000012757	smg6	80	55.170	ENSVVUG00000021727	SMG6	87	54.688	Vulpes_vulpes
ENSCSEG00000012757	smg6	69	55.720	ENSXETG00000023799	SMG6	89	49.886	Xenopus_tropicalis
ENSCSEG00000012757	smg6	98	65.177	ENSXCOG00000009867	smg6	99	62.924	Xiphophorus_couchianus
ENSCSEG00000012757	smg6	100	64.982	ENSXMAG00000010321	smg6	100	65.160	Xiphophorus_maculatus