EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000012928 (Gene tree)
Gene ID: 103387618
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 42978 bases
Position: chr12:13472580-13515557
Accession: 103387618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000020296	Tudor-knot	PF11717.8	3.9e-10	1	1
ENSCSEP00000020259	Tudor-knot	PF11717.8	4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000020519	-	6161	XM_017037092	ENSCSEP00000020269	1240 (aa)	XP_024916827	UPI000497F214
ENSCSET00000020546	-	6034	-	ENSCSEP00000020296	1264 (aa)	-	-
ENSCSET00000020509	-	6344	XM_017037089	ENSCSEP00000020259	1301 (aa)	XP_024916823	UPI0004969067

Gene Model

Click here to download ENSCSEG00000012928's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000012928's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000012928	tomm20a	87	73.850	ENSG00000054267	ARID4B	89	75.061	Homo_sapiens
ENSCSEG00000012928	tomm20a	99	84.288	ENSAPOG00000010823	tomm20a	99	83.127	Acanthochromis_polyacanthus
ENSCSEG00000012928	tomm20a	92	88.889	ENSACIG00000006313	tomm20a	98	89.781	Amphilophus_citrinellus
ENSCSEG00000012928	tomm20a	99	83.901	ENSAOCG00000003330	tomm20a	99	82.663	Amphiprion_ocellaris
ENSCSEG00000012928	tomm20a	99	83.901	ENSAPEG00000024018	tomm20a	99	82.663	Amphiprion_percula
ENSCSEG00000012928	tomm20a	99	83.759	ENSATEG00000014930	tomm20a	99	82.933	Anabas_testudineus
ENSCSEG00000012928	tomm20a	90	80.992	ENSACLG00000023521	tomm20a	98	78.729	Astatotilapia_calliptera
ENSCSEG00000012928	tomm20a	80	92.135	ENSAMXG00000003657	tomm20a	91	75.604	Astyanax_mexicanus
ENSCSEG00000012928	tomm20a	100	51.286	ENSBTAG00000000222	ARID4B	99	52.171	Bos_taurus
ENSCSEG00000012928	tomm20a	100	50.826	ENSCJAG00000018055	ARID4B	53	42.582	Callithrix_jacchus
ENSCSEG00000012928	tomm20a	100	51.036	ENSCAFG00000011439	ARID4B	99	52.467	Canis_familiaris
ENSCSEG00000012928	tomm20a	99	51.267	ENSCAFG00020027130	ARID4B	99	52.374	Canis_lupus_dingo
ENSCSEG00000012928	tomm20a	99	49.606	ENSCHIG00000020742	ARID4B	99	50.765	Capra_hircus
ENSCSEG00000012928	tomm20a	99	51.191	ENSCPOG00000034766	ARID4B	99	51.453	Cavia_porcellus
ENSCSEG00000012928	tomm20a	100	51.513	ENSCLAG00000003255	ARID4B	99	52.812	Chinchilla_lanigera
ENSCSEG00000012928	tomm20a	66	90.476	ENSCHOG00000001152	ARID4B	62	90.476	Choloepus_hoffmanni
ENSCSEG00000012928	tomm20a	60	45.141	ENSCPBG00000004501	ARID4B	99	51.101	Chrysemys_picta_bellii
ENSCSEG00000012928	tomm20a	100	52.052	ENSCGRG00001014397	Arid4b	99	52.907	Cricetulus_griseus_chok1gshd
ENSCSEG00000012928	tomm20a	99	52.020	ENSCGRG00000004910	Arid4b	99	52.877	Cricetulus_griseus_crigri
ENSCSEG00000012928	tomm20a	98	77.821	ENSCVAG00000003244	tomm20a	99	77.294	Cyprinodon_variegatus
ENSCSEG00000012928	tomm20a	90	61.497	ENSETEG00000005596	ARID4B	89	62.032	Echinops_telfairi
ENSCSEG00000012928	tomm20a	57	80.556	ENSEEUG00000005378	ARID4B	62	81.250	Erinaceus_europaeus
ENSCSEG00000012928	tomm20a	66	54.386	ENSELUG00000018441	tomm20a	91	57.931	Esox_lucius
ENSCSEG00000012928	tomm20a	98	77.487	ENSFHEG00000003798	tomm20a	99	77.066	Fundulus_heteroclitus
ENSCSEG00000012928	tomm20a	90	73.047	ENSGMOG00000018747	tomm20a	91	72.656	Gadus_morhua
ENSCSEG00000012928	tomm20a	98	74.444	ENSGACG00000004298	tomm20a	99	75.229	Gasterosteus_aculeatus
ENSCSEG00000012928	tomm20a	60	45.644	ENSGAGG00000020544	ARID4B	97	50.660	Gopherus_agassizii
ENSCSEG00000012928	tomm20a	99	81.318	ENSHBUG00000020369	tomm20a	99	80.775	Haplochromis_burtoni
ENSCSEG00000012928	tomm20a	94	81.659	ENSHCOG00000010376	tomm20a	98	82.751	Hippocampus_comes
ENSCSEG00000012928	tomm20a	100	62.132	ENSIPUG00000014234	arid4b	99	61.853	Ictalurus_punctatus
ENSCSEG00000012928	tomm20a	92	72.010	ENSKMAG00000010987	tomm20a	98	74.757	Kryptolebias_marmoratus
ENSCSEG00000012928	tomm20a	100	58.491	ENSLOCG00000015899	tomm20a	99	59.375	Lepisosteus_oculatus
ENSCSEG00000012928	tomm20a	99	51.039	ENSLAFG00000014295	ARID4B	99	51.827	Loxodonta_africana
ENSCSEG00000012928	tomm20a	93	82.949	ENSMAMG00000017134	tomm20a	99	82.290	Mastacembelus_armatus
ENSCSEG00000012928	tomm20a	99	81.240	ENSMZEG00005009879	tomm20a	99	80.698	Maylandia_zebra
ENSCSEG00000012928	tomm20a	100	51.291	ENSMICG00000016358	ARID4B	99	52.465	Microcebus_murinus
ENSCSEG00000012928	tomm20a	93	85.339	ENSMMOG00000000561	tomm20a	98	85.996	Mola_mola
ENSCSEG00000012928	tomm20a	99	83.061	ENSMALG00000005205	tomm20a	99	83.450	Monopterus_albus
ENSCSEG00000012928	tomm20a	92	84.434	ENSNBRG00000019684	tomm20a	98	87.621	Neolamprologus_brichardi
ENSCSEG00000012928	tomm20a	100	75.973	ENSORLG00000012510	tomm20a	99	75.580	Oryzias_latipes
ENSCSEG00000012928	tomm20a	91	82.767	ENSORLG00020013988	tomm20a	98	83.981	Oryzias_latipes_hni
ENSCSEG00000012928	tomm20a	91	82.927	ENSORLG00015022835	tomm20a	98	84.634	Oryzias_latipes_hsok
ENSCSEG00000012928	tomm20a	100	76.049	ENSOMEG00000000521	tomm20a	99	75.736	Oryzias_melastigma
ENSCSEG00000012928	tomm20a	99	51.267	ENSOARG00000003481	ARID4B	97	52.212	Ovis_aries
ENSCSEG00000012928	tomm20a	53	78.226	ENSPMGG00000001596	tomm20a	88	78.226	Periophthalmus_magnuspinnatus
ENSCSEG00000012928	tomm20a	100	51.813	ENSPCIG00000029756	ARID4B	99	52.561	Phascolarctos_cinereus
ENSCSEG00000012928	tomm20a	98	77.101	ENSPFOG00000019430	tomm20a	99	78.224	Poecilia_formosa
ENSCSEG00000012928	tomm20a	98	76.715	ENSPLAG00000010554	tomm20a	99	77.915	Poecilia_latipinna
ENSCSEG00000012928	tomm20a	98	75.396	ENSPMEG00000003093	tomm20a	99	75.888	Poecilia_mexicana
ENSCSEG00000012928	tomm20a	98	78.019	ENSPREG00000007996	tomm20a	99	78.217	Poecilia_reticulata
ENSCSEG00000012928	tomm20a	100	50.322	ENSPVAG00000015159	ARID4B	92	76.271	Pteropus_vampyrus
ENSCSEG00000012928	tomm20a	98	75.155	ENSPNYG00000013988	tomm20a	99	75.699	Pundamilia_nyererei
ENSCSEG00000012928	tomm20a	100	66.264	ENSPNAG00000000523	tomm20a	92	65.031	Pygocentrus_nattereri
ENSCSEG00000012928	tomm20a	90	46.236	ENSRNOG00000016391	LOC100912163	96	47.234	Rattus_norvegicus
ENSCSEG00000012928	tomm20a	99	48.119	ENSRBIG00000042029	ARID4B	92	73.219	Rhinopithecus_bieti
ENSCSEG00000012928	tomm20a	100	58.652	ENSSFOG00015000132	arid4b	99	58.837	Scleropages_formosus
ENSCSEG00000012928	tomm20a	99	83.714	ENSSMAG00000010430	tomm20a	99	83.652	Scophthalmus_maximus
ENSCSEG00000012928	tomm20a	99	86.113	ENSSDUG00000003019	tomm20a	99	85.570	Seriola_dumerili
ENSCSEG00000012928	tomm20a	99	84.043	ENSSPAG00000007358	tomm20a	99	83.579	Stegastes_partitus
ENSCSEG00000012928	tomm20a	69	68.268	ENSTRUG00000002893	tomm20a	93	68.618	Takifugu_rubripes
ENSCSEG00000012928	tomm20a	70	66.910	ENSTBEG00000003961	ARID4B	66	67.157	Tupaia_belangeri
ENSCSEG00000012928	tomm20a	100	49.046	ENSVVUG00000008154	ARID4B	98	51.252	Vulpes_vulpes
ENSCSEG00000012928	tomm20a	98	78.244	ENSXMAG00000006538	tomm20a	99	78.295	Xiphophorus_maculatus