EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000013324 (Gene tree)
Gene ID
103388904
Gene Symbol
pabpc1a
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Minus strand
Length
6355 bases
Position
chr13:19311121-19317475
Accession
103388904
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000020865PABPPF00658.186.8e-3211
ENSCSEP00000020865RRM_5PF13893.63.3e-0812
ENSCSEP00000020865RRM_5PF13893.63.3e-0822
ENSCSEP00000020865RRM_1PF00076.224.6e-9314
ENSCSEP00000020865RRM_1PF00076.224.6e-9324
ENSCSEP00000020865RRM_1PF00076.224.6e-9334
ENSCSEP00000020865RRM_1PF00076.224.6e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000021135-3336XM_008324115ENSCSEP00000020865632 (aa)XP_008322337UPI00049524CC
Gene Model
Click here to download ENSCSEG00000013324's gene model file
Pathways
Pathway IDPathway NameSource
csem03013RNA transportKEGG
csem03015mRNA surveillance pathwayKEGG
csem03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000013324's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000013324pabpc1a6731.902ENSCSEG00000015089ncl5530.058
ENSCSEG00000013324pabpc1a5933.684ENSCSEG00000003790rbms2a5333.684
ENSCSEG00000013324pabpc1a5734.091ENSCSEG00000008675celf16634.091
ENSCSEG00000013324pabpc1a5734.884ENSCSEG00000003342-5734.884
ENSCSEG00000013324pabpc1a10088.661ENSCSEG00000015241-9988.661
ENSCSEG00000013324pabpc1a5932.632ENSCSEG00000014677-7232.632
ENSCSEG00000013324pabpc1a5734.177ENSCSEG00000000688-9030.952
ENSCSEG00000013324pabpc1a5836.986ENSCSEG00000007913celf3a8236.986
ENSCSEG00000013324pabpc1a9965.120ENSCSEG00000021295pabpc1l9964.800
ENSCSEG00000013324pabpc1a5937.349ENSCSEG00000006335elavl28537.349
ENSCSEG00000013324pabpc1a5338.554ENSCSEG00000007749si:dkey-205h23.26738.554
ENSCSEG00000013324pabpc1a6039.759ENSCSEG00000002800celf5a7439.759
ENSCSEG00000013324pabpc1a9975.743ENSCSEG00000000130pabpc49975.743
ENSCSEG00000013324pabpc1a5936.145ENSCSEG00000020141elavl48436.145
ENSCSEG00000013324pabpc1a6130.545ENSCSEG00000014331tia1l7630.545
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000013324pabpc1a5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSCSEG00000013324pabpc1a5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSCSEG00000013324pabpc1a9990.476ENSAPOG00000017776pabpc1b9990.317Acanthochromis_polyacanthus
ENSCSEG00000013324pabpc1a10097.785ENSAPOG00000015105pabpc1a9997.785Acanthochromis_polyacanthus
ENSCSEG00000013324pabpc1a5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSCSEG00000013324pabpc1a10097.943ENSACIG00000004685pabpc1a9997.943Amphilophus_citrinellus
ENSCSEG00000013324pabpc1a9987.025ENSACIG00000018366pabpc1b9985.070Amphilophus_citrinellus
ENSCSEG00000013324pabpc1a10098.101ENSAOCG00000011656pabpc1a9998.101Amphiprion_ocellaris
ENSCSEG00000013324pabpc1a9990.794ENSAOCG00000019839pabpc1b9990.635Amphiprion_ocellaris
ENSCSEG00000013324pabpc1a9990.794ENSAPEG00000010435pabpc1b9990.635Amphiprion_percula
ENSCSEG00000013324pabpc1a10098.101ENSAPEG00000006963pabpc1a9998.101Amphiprion_percula
ENSCSEG00000013324pabpc1a10098.259ENSATEG00000024852pabpc1a9998.259Anabas_testudineus
ENSCSEG00000013324pabpc1a9989.540ENSATEG00000012917pabpc1b9989.540Anabas_testudineus
ENSCSEG00000013324pabpc1a5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSCSEG00000013324pabpc1a5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSCSEG00000013324pabpc1a9999.279ENSACLG00000009399pabpc1a9999.279Astatotilapia_calliptera
ENSCSEG00000013324pabpc1a9989.841ENSACLG00000014335pabpc1b9989.683Astatotilapia_calliptera
ENSCSEG00000013324pabpc1a9990.635ENSAMXG00000008599pabpc1b9990.476Astyanax_mexicanus
ENSCSEG00000013324pabpc1a5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSCSEG00000013324pabpc1a5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSCSEG00000013324pabpc1a5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSCSEG00000013324pabpc1a5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSCSEG00000013324pabpc1a5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSCSEG00000013324pabpc1a5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSCSEG00000013324pabpc1a5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSCSEG00000013324pabpc1a5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSCSEG00000013324pabpc1a5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSCSEG00000013324pabpc1a5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSCSEG00000013324pabpc1a5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSCSEG00000013324pabpc1a5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSCSEG00000013324pabpc1a5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSCSEG00000013324pabpc1a5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSCSEG00000013324pabpc1a5880.110ENSCGRG00001023387-9677.835Cricetulus_griseus_chok1gshd
ENSCSEG00000013324pabpc1a10097.310ENSCVAG00000021872pabpc1a9997.310Cyprinodon_variegatus
ENSCSEG00000013324pabpc1a9988.431ENSCVAG00000005489pabpc1b9988.273Cyprinodon_variegatus
ENSCSEG00000013324pabpc1a9989.524ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSCSEG00000013324pabpc1a9992.429ENSDARG00000017219pabpc1a9992.429Danio_rerio
ENSCSEG00000013324pabpc1a5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSCSEG00000013324pabpc1a5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSCSEG00000013324pabpc1a5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSCSEG00000013324pabpc1a5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSCSEG00000013324pabpc1a5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSCSEG00000013324pabpc1a10093.849ENSELUG00000003614pabpc1a9993.849Esox_lucius
ENSCSEG00000013324pabpc1a9989.241ENSELUG00000015062-9989.082Esox_lucius
ENSCSEG00000013324pabpc1a5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSCSEG00000013324pabpc1a5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSCSEG00000013324pabpc1a5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSCSEG00000013324pabpc1a10088.976ENSFHEG00000008186pabpc1b9989.134Fundulus_heteroclitus
ENSCSEG00000013324pabpc1a10097.310ENSFHEG00000018979pabpc1a9997.310Fundulus_heteroclitus
ENSCSEG00000013324pabpc1a9982.047ENSGMOG00000002448-9880.841Gadus_morhua
ENSCSEG00000013324pabpc1a10093.333ENSGMOG00000013448pabpc1a9993.178Gadus_morhua
ENSCSEG00000013324pabpc1a10096.994ENSGAFG00000019750pabpc1a9996.994Gambusia_affinis
ENSCSEG00000013324pabpc1a10089.905ENSGAFG00000010193pabpc1b9990.063Gambusia_affinis
ENSCSEG00000013324pabpc1a10097.785ENSGACG00000003572pabpc1a9997.785Gasterosteus_aculeatus
ENSCSEG00000013324pabpc1a9988.697ENSGACG00000003771pabpc1b9988.697Gasterosteus_aculeatus
ENSCSEG00000013324pabpc1a5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSCSEG00000013324pabpc1a5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSCSEG00000013324pabpc1a9989.841ENSHBUG00000002075pabpc1b9989.683Haplochromis_burtoni
ENSCSEG00000013324pabpc1a9999.279ENSHBUG00000020487pabpc1a9999.279Haplochromis_burtoni
ENSCSEG00000013324pabpc1a5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSCSEG00000013324pabpc1a5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSCSEG00000013324pabpc1a5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSCSEG00000013324pabpc1a9970.645ENSHCOG00000003175pabpc1b9970.645Hippocampus_comes
ENSCSEG00000013324pabpc1a10097.785ENSHCOG00000013502pabpc1a9997.785Hippocampus_comes
ENSCSEG00000013324pabpc1a10090.665ENSIPUG00000008848pabpc1a9990.665Ictalurus_punctatus
ENSCSEG00000013324pabpc1a10084.335ENSIPUG00000010791-9984.177Ictalurus_punctatus
ENSCSEG00000013324pabpc1a7554.886ENSIPUG00000021244-6554.886Ictalurus_punctatus
ENSCSEG00000013324pabpc1a8156.716ENSIPUG00000018724-7956.716Ictalurus_punctatus
ENSCSEG00000013324pabpc1a5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSCSEG00000013324pabpc1a5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSCSEG00000013324pabpc1a5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSCSEG00000013324pabpc1a9989.030ENSKMAG00000008049pabpc1b9989.189Kryptolebias_marmoratus
ENSCSEG00000013324pabpc1a10097.627ENSKMAG00000000605pabpc1a9997.627Kryptolebias_marmoratus
ENSCSEG00000013324pabpc1a10097.468ENSLBEG00000024002-9997.468Labrus_bergylta
ENSCSEG00000013324pabpc1a9989.365ENSLBEG00000026845pabpc1b9989.030Labrus_bergylta
ENSCSEG00000013324pabpc1a5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSCSEG00000013324pabpc1a5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSCSEG00000013324pabpc1a5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSCSEG00000013324pabpc1a5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSCSEG00000013324pabpc1a5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSCSEG00000013324pabpc1a5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSCSEG00000013324pabpc1a5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSCSEG00000013324pabpc1a10097.627ENSMAMG00000004502-9998.558Mastacembelus_armatus
ENSCSEG00000013324pabpc1a9989.841ENSMAMG00000014610pabpc1b9990.000Mastacembelus_armatus
ENSCSEG00000013324pabpc1a9989.841ENSMZEG00005026745pabpc1b9989.683Maylandia_zebra
ENSCSEG00000013324pabpc1a9999.279ENSMZEG00005025416pabpc1a9999.279Maylandia_zebra
ENSCSEG00000013324pabpc1a5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSCSEG00000013324pabpc1a9997.837ENSMMOG00000018044pabpc1a9997.837Mola_mola
ENSCSEG00000013324pabpc1a9984.897ENSMMOG00000018009pabpc1b9985.215Mola_mola
ENSCSEG00000013324pabpc1a9966.509ENSMODG00000015024-9966.139Monodelphis_domestica
ENSCSEG00000013324pabpc1a9972.843ENSMODG00000013156-9873.194Monodelphis_domestica
ENSCSEG00000013324pabpc1a9983.625ENSMALG00000006066pabpc1b9985.533Monopterus_albus
ENSCSEG00000013324pabpc1a10097.943ENSMALG00000013020-9997.943Monopterus_albus
ENSCSEG00000013324pabpc1a5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSCSEG00000013324pabpc1a9999.279ENSNBRG00000003068-9999.279Neolamprologus_brichardi
ENSCSEG00000013324pabpc1a9989.841ENSNBRG00000013737pabpc1b9989.683Neolamprologus_brichardi
ENSCSEG00000013324pabpc1a5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSCSEG00000013324pabpc1a5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSCSEG00000013324pabpc1a9990.000ENSONIG00000002717pabpc1b9989.841Oreochromis_niloticus
ENSCSEG00000013324pabpc1a10096.519ENSONIG00000006871-9996.519Oreochromis_niloticus
ENSCSEG00000013324pabpc1a5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSCSEG00000013324pabpc1a9984.738ENSORLG00000003008-9984.420Oryzias_latipes
ENSCSEG00000013324pabpc1a9998.333ENSORLG00000002691pabpc1a9998.333Oryzias_latipes
ENSCSEG00000013324pabpc1a10096.361ENSORLG00020022398pabpc1a9996.361Oryzias_latipes_hni
ENSCSEG00000013324pabpc1a9984.579ENSORLG00020022259-9984.261Oryzias_latipes_hni
ENSCSEG00000013324pabpc1a9985.056ENSORLG00015010932-9984.738Oryzias_latipes_hsok
ENSCSEG00000013324pabpc1a10096.203ENSORLG00015013633pabpc19996.203Oryzias_latipes_hsok
ENSCSEG00000013324pabpc1a10096.994ENSOMEG00000020219pabpc1a9996.994Oryzias_melastigma
ENSCSEG00000013324pabpc1a9981.007ENSOMEG00000013627pabpc1b9881.007Oryzias_melastigma
ENSCSEG00000013324pabpc1a5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSCSEG00000013324pabpc1a5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSCSEG00000013324pabpc1a5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSCSEG00000013324pabpc1a5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSCSEG00000013324pabpc1a5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSCSEG00000013324pabpc1a5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSCSEG00000013324pabpc1a5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSCSEG00000013324pabpc1a5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSCSEG00000013324pabpc1a9990.317ENSPKIG00000005676pabpc1b9990.317Paramormyrops_kingsleyae
ENSCSEG00000013324pabpc1a7097.978ENSPMGG00000022487pabpc1a9297.978Periophthalmus_magnuspinnatus
ENSCSEG00000013324pabpc1a7092.152ENSPMGG00000023134-9792.152Periophthalmus_magnuspinnatus
ENSCSEG00000013324pabpc1a9972.303ENSPCIG00000016995-5472.285Phascolarctos_cinereus
ENSCSEG00000013324pabpc1a10095.963ENSPFOG00000010815pabpc1a9995.963Poecilia_formosa
ENSCSEG00000013324pabpc1a10089.432ENSPFOG00000005917pabpc1b9989.590Poecilia_formosa
ENSCSEG00000013324pabpc1a10089.748ENSPLAG00000001388pabpc1b9989.905Poecilia_latipinna
ENSCSEG00000013324pabpc1a10097.943ENSPLAG00000004114pabpc1a9997.943Poecilia_latipinna
ENSCSEG00000013324pabpc1a10097.943ENSPMEG00000001334pabpc1a9997.943Poecilia_mexicana
ENSCSEG00000013324pabpc1a10089.432ENSPMEG00000014399pabpc1b9989.590Poecilia_mexicana
ENSCSEG00000013324pabpc1a10089.748ENSPREG00000010911pabpc1b9989.905Poecilia_reticulata
ENSCSEG00000013324pabpc1a9999.279ENSPREG00000019595pabpc1a9999.279Poecilia_reticulata
ENSCSEG00000013324pabpc1a5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSCSEG00000013324pabpc1a5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSCSEG00000013324pabpc1a5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSCSEG00000013324pabpc1a5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSCSEG00000013324pabpc1a10097.468ENSPNYG00000005192pabpc1a9997.468Pundamilia_nyererei
ENSCSEG00000013324pabpc1a9989.841ENSPNYG00000012578pabpc1b9989.683Pundamilia_nyererei
ENSCSEG00000013324pabpc1a10091.325ENSPNAG00000028408pabpc1a9595.056Pygocentrus_nattereri
ENSCSEG00000013324pabpc1a9990.159ENSPNAG00000024626pabpc1b9990.000Pygocentrus_nattereri
ENSCSEG00000013324pabpc1a5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSCSEG00000013324pabpc1a9988.967ENSRBIG00000028738-9388.967Rhinopithecus_bieti
ENSCSEG00000013324pabpc1a5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSCSEG00000013324pabpc1a9864.103ENSSHAG00000000511-10063.782Sarcophilus_harrisii
ENSCSEG00000013324pabpc1a9989.348ENSSFOG00015006662pabpc1a9989.348Scleropages_formosus
ENSCSEG00000013324pabpc1a9990.620ENSSFOG00015002752-9990.461Scleropages_formosus
ENSCSEG00000013324pabpc1a6678.613ENSSFOG00015019668-8878.613Scleropages_formosus
ENSCSEG00000013324pabpc1a9989.365ENSSMAG00000006869pabpc1b9989.206Scophthalmus_maximus
ENSCSEG00000013324pabpc1a10097.468ENSSMAG00000010803pabpc1a9997.468Scophthalmus_maximus
ENSCSEG00000013324pabpc1a9988.413ENSSDUG00000011965pabpc1b9988.076Seriola_dumerili
ENSCSEG00000013324pabpc1a10097.627ENSSDUG00000006675pabpc1a9997.627Seriola_dumerili
ENSCSEG00000013324pabpc1a10097.627ENSSLDG00000011661pabpc1a9997.627Seriola_lalandi_dorsalis
ENSCSEG00000013324pabpc1a9990.079ENSSLDG00000014156pabpc1b9989.748Seriola_lalandi_dorsalis
ENSCSEG00000013324pabpc1a10097.943ENSSPAG00000014453-9997.943Stegastes_partitus
ENSCSEG00000013324pabpc1a9990.952ENSSPAG00000019265pabpc1b9990.620Stegastes_partitus
ENSCSEG00000013324pabpc1a5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSCSEG00000013324pabpc1a5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSCSEG00000013324pabpc1a10086.299ENSTRUG00000003767-9986.299Takifugu_rubripes
ENSCSEG00000013324pabpc1a10094.471ENSTRUG00000011577-9994.945Takifugu_rubripes
ENSCSEG00000013324pabpc1a10086.834ENSTNIG00000009153pabpc1b9986.207Tetraodon_nigroviridis
ENSCSEG00000013324pabpc1a10091.433ENSTNIG00000013307pabpc1a9991.900Tetraodon_nigroviridis
ENSCSEG00000013324pabpc1a5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSCSEG00000013324pabpc1a5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSCSEG00000013324pabpc1a5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSCSEG00000013324pabpc1a9754.369ENSUMAG00000023926-8969.613Ursus_maritimus
ENSCSEG00000013324pabpc1a5979.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSCSEG00000013324pabpc1a9845.392ENSXETG00000015439-9745.392Xenopus_tropicalis
ENSCSEG00000013324pabpc1a10091.614ENSXCOG00000017066pabpc1a9991.614Xiphophorus_couchianus
ENSCSEG00000013324pabpc1a10085.782ENSXCOG00000019901pabpc1b9985.647Xiphophorus_couchianus
ENSCSEG00000013324pabpc1a10089.905ENSXMAG00000003753pabpc1b9990.063Xiphophorus_maculatus
ENSCSEG00000013324pabpc1a10097.627ENSXMAG00000002555pabpc1a9997.627Xiphophorus_maculatus

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