EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000013464 (Gene tree)
Gene ID: 103394177
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 13474 bases
Position: chr18:6533534-6547007
Accession: 103394177
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000021157	CPSF_A	PF03178.15	8.2e-92	1	1
ENSCSEP00000021173	CPSF_A	PF03178.15	3.4e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000021429	-	4245	XM_017041088	ENSCSEP00000021157	1414 (aa)	XP_016896577	-
ENSCSET00000021446	-	8965	-	ENSCSEP00000021173	1369 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000013464's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000013464's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000013464	cpsf1	100	77.178	ENSG00000071894	CPSF1	100	77.455	Homo_sapiens
ENSCSEG00000013464	cpsf1	99	89.059	ENSAPOG00000019621	cpsf1	100	86.730	Acanthochromis_polyacanthus
ENSCSEG00000013464	cpsf1	99	76.543	ENSAMEG00000005557	CPSF1	99	76.593	Ailuropoda_melanoleuca
ENSCSEG00000013464	cpsf1	100	86.727	ENSACIG00000006112	cpsf1	100	87.005	Amphilophus_citrinellus
ENSCSEG00000013464	cpsf1	100	88.052	ENSAOCG00000007120	cpsf1	100	87.914	Amphiprion_ocellaris
ENSCSEG00000013464	cpsf1	100	88.759	ENSAPEG00000005755	cpsf1	100	88.621	Amphiprion_percula
ENSCSEG00000013464	cpsf1	99	89.956	ENSATEG00000011097	cpsf1	100	86.883	Anabas_testudineus
ENSCSEG00000013464	cpsf1	93	73.755	ENSACAG00000009655	CPSF1	100	73.532	Anolis_carolinensis
ENSCSEG00000013464	cpsf1	100	77.632	ENSANAG00000036514	CPSF1	100	77.701	Aotus_nancymaae
ENSCSEG00000013464	cpsf1	99	89.635	ENSACLG00000012231	cpsf1	100	86.625	Astatotilapia_calliptera
ENSCSEG00000013464	cpsf1	100	78.631	ENSAMXG00000008485	cpsf1	100	78.422	Astyanax_mexicanus
ENSCSEG00000013464	cpsf1	100	76.495	ENSBTAG00000008355	CPSF1	100	77.426	Bos_taurus
ENSCSEG00000013464	cpsf1	100	32.373	WBGene00022301	cpsf-1	99	41.243	Caenorhabditis_elegans
ENSCSEG00000013464	cpsf1	100	77.770	ENSCJAG00000021421	CPSF1	100	77.632	Callithrix_jacchus
ENSCSEG00000013464	cpsf1	99	77.511	ENSCAFG00000001600	CPSF1	100	78.468	Canis_familiaris
ENSCSEG00000013464	cpsf1	100	77.194	ENSCAFG00020020821	CPSF1	100	77.540	Canis_lupus_dingo
ENSCSEG00000013464	cpsf1	100	73.666	ENSCHIG00000015833	CPSF1	100	73.666	Capra_hircus
ENSCSEG00000013464	cpsf1	100	77.855	ENSTSYG00000028560	CPSF1	100	77.855	Carlito_syrichta
ENSCSEG00000013464	cpsf1	99	78.052	ENSCAPG00000014921	CPSF1	99	78.186	Cavia_aperea
ENSCSEG00000013464	cpsf1	100	77.623	ENSCPOG00000011448	CPSF1	100	77.415	Cavia_porcellus
ENSCSEG00000013464	cpsf1	100	77.839	ENSCCAG00000037658	CPSF1	100	77.701	Cebus_capucinus
ENSCSEG00000013464	cpsf1	100	77.232	ENSCATG00000037234	CPSF1	100	77.439	Cercocebus_atys
ENSCSEG00000013464	cpsf1	100	77.978	ENSCLAG00000012166	CPSF1	100	77.770	Chinchilla_lanigera
ENSCSEG00000013464	cpsf1	100	77.578	ENSCSAG00000008502	CPSF1	100	77.509	Chlorocebus_sabaeus
ENSCSEG00000013464	cpsf1	99	79.838	ENSCPBG00000018910	CPSF1	96	79.930	Chrysemys_picta_bellii
ENSCSEG00000013464	cpsf1	96	48.298	ENSCING00000000514	-	100	48.298	Ciona_intestinalis
ENSCSEG00000013464	cpsf1	99	48.405	ENSCSAVG00000002293	-	99	49.767	Ciona_savignyi
ENSCSEG00000013464	cpsf1	99	75.544	ENSCANG00000032760	CPSF1	100	77.315	Colobus_angolensis_palliatus
ENSCSEG00000013464	cpsf1	100	77.685	ENSCGRG00001016344	Cpsf1	100	77.616	Cricetulus_griseus_chok1gshd
ENSCSEG00000013464	cpsf1	100	76.161	ENSCGRG00000003118	Cpsf1	100	76.091	Cricetulus_griseus_crigri
ENSCSEG00000013464	cpsf1	92	84.170	ENSCVAG00000014059	cpsf1	100	79.167	Cyprinodon_variegatus
ENSCSEG00000013464	cpsf1	100	84.679	ENSDARG00000034178	cpsf1	100	84.679	Danio_rerio
ENSCSEG00000013464	cpsf1	56	82.319	ENSDNOG00000043654	CPSF1	94	82.319	Dasypus_novemcinctus
ENSCSEG00000013464	cpsf1	99	77.326	ENSDORG00000006278	Cpsf1	99	77.834	Dipodomys_ordii
ENSCSEG00000013464	cpsf1	100	44.534	FBgn0024698	Cpsf160	100	44.828	Drosophila_melanogaster
ENSCSEG00000013464	cpsf1	80	82.550	ENSETEG00000006022	CPSF1	83	82.550	Echinops_telfairi
ENSCSEG00000013464	cpsf1	100	77.747	ENSEASG00005010774	CPSF1	100	77.816	Equus_asinus_asinus
ENSCSEG00000013464	cpsf1	100	77.609	ENSECAG00000022209	CPSF1	100	77.678	Equus_caballus
ENSCSEG00000013464	cpsf1	100	77.125	ENSEEUG00000000471	CPSF1	100	77.194	Erinaceus_europaeus
ENSCSEG00000013464	cpsf1	100	84.589	ENSELUG00000012271	cpsf1	100	84.934	Esox_lucius
ENSCSEG00000013464	cpsf1	100	78.101	ENSFDAG00000016060	CPSF1	100	77.893	Fukomys_damarensis
ENSCSEG00000013464	cpsf1	100	86.848	ENSFHEG00000016801	cpsf1	100	86.639	Fundulus_heteroclitus
ENSCSEG00000013464	cpsf1	100	85.170	ENSGMOG00000000796	cpsf1	100	85.239	Gadus_morhua
ENSCSEG00000013464	cpsf1	100	80.486	ENSGAFG00000018890	cpsf1	100	80.694	Gambusia_affinis
ENSCSEG00000013464	cpsf1	100	87.741	ENSGACG00000008703	cpsf1	100	87.923	Gasterosteus_aculeatus
ENSCSEG00000013464	cpsf1	100	77.024	ENSGAGG00000004276	CPSF1	98	81.391	Gopherus_agassizii
ENSCSEG00000013464	cpsf1	100	77.408	ENSGGOG00000016185	CPSF1	100	77.685	Gorilla_gorilla
ENSCSEG00000013464	cpsf1	100	89.573	ENSHBUG00000018900	cpsf1	100	89.503	Haplochromis_burtoni
ENSCSEG00000013464	cpsf1	100	78.047	ENSHGLG00000016139	CPSF1	100	77.839	Heterocephalus_glaber_female
ENSCSEG00000013464	cpsf1	100	77.978	ENSHGLG00100009750	CPSF1	100	77.770	Heterocephalus_glaber_male
ENSCSEG00000013464	cpsf1	99	87.208	ENSHCOG00000018509	cpsf1	100	84.908	Hippocampus_comes
ENSCSEG00000013464	cpsf1	100	81.224	ENSIPUG00000011259	cpsf1	100	81.293	Ictalurus_punctatus
ENSCSEG00000013464	cpsf1	99	77.190	ENSSTOG00000009957	CPSF1	99	77.770	Ictidomys_tridecemlineatus
ENSCSEG00000013464	cpsf1	100	78.225	ENSJJAG00000023002	Cpsf1	100	78.017	Jaculus_jaculus
ENSCSEG00000013464	cpsf1	91	89.969	ENSKMAG00000001940	cpsf1	99	89.969	Kryptolebias_marmoratus
ENSCSEG00000013464	cpsf1	99	88.816	ENSLBEG00000003601	cpsf1	100	86.764	Labrus_bergylta
ENSCSEG00000013464	cpsf1	88	78.058	ENSLACG00000000233	CPSF1	92	77.938	Latimeria_chalumnae
ENSCSEG00000013464	cpsf1	100	80.249	ENSLOCG00000008484	cpsf1	100	80.939	Lepisosteus_oculatus
ENSCSEG00000013464	cpsf1	99	77.471	ENSLAFG00000022601	CPSF1	99	77.810	Loxodonta_africana
ENSCSEG00000013464	cpsf1	100	77.301	ENSMFAG00000037013	CPSF1	100	77.509	Macaca_fascicularis
ENSCSEG00000013464	cpsf1	100	77.561	ENSMMUG00000007380	CPSF1	100	77.770	Macaca_mulatta
ENSCSEG00000013464	cpsf1	99	77.794	ENSMNEG00000043564	CPSF1	99	78.009	Macaca_nemestrina
ENSCSEG00000013464	cpsf1	100	77.301	ENSMLEG00000043010	CPSF1	100	77.509	Mandrillus_leucophaeus
ENSCSEG00000013464	cpsf1	99	90.372	ENSMAMG00000003803	cpsf1	100	87.068	Mastacembelus_armatus
ENSCSEG00000013464	cpsf1	100	86.415	ENSMZEG00005001168	cpsf1	100	86.625	Maylandia_zebra
ENSCSEG00000013464	cpsf1	100	77.685	ENSMAUG00000003601	Cpsf1	100	77.685	Mesocricetus_auratus
ENSCSEG00000013464	cpsf1	100	77.755	ENSMICG00000015767	CPSF1	100	77.547	Microcebus_murinus
ENSCSEG00000013464	cpsf1	100	77.755	ENSMOCG00000022758	Cpsf1	100	77.547	Microtus_ochrogaster
ENSCSEG00000013464	cpsf1	100	88.803	ENSMMOG00000021245	cpsf1	100	88.803	Mola_mola
ENSCSEG00000013464	cpsf1	100	77.877	ENSMODG00000010755	CPSF1	100	77.877	Monodelphis_domestica
ENSCSEG00000013464	cpsf1	99	89.481	ENSMALG00000020545	cpsf1	100	86.237	Monopterus_albus
ENSCSEG00000013464	cpsf1	100	78.032	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.824	Mus_caroli
ENSCSEG00000013464	cpsf1	100	77.963	ENSMUSG00000034022	Cpsf1	100	77.755	Mus_musculus
ENSCSEG00000013464	cpsf1	100	78.101	MGP_PahariEiJ_G0019946	Cpsf1	100	77.893	Mus_pahari
ENSCSEG00000013464	cpsf1	100	78.032	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.824	Mus_spretus
ENSCSEG00000013464	cpsf1	99	77.042	ENSMPUG00000006419	CPSF1	93	78.296	Mustela_putorius_furo
ENSCSEG00000013464	cpsf1	100	77.839	ENSNGAG00000022460	Cpsf1	100	77.632	Nannospalax_galili
ENSCSEG00000013464	cpsf1	100	83.986	ENSNBRG00000000813	cpsf1	100	84.034	Neolamprologus_brichardi
ENSCSEG00000013464	cpsf1	86	65.789	ENSNLEG00000010633	-	100	76.852	Nomascus_leucogenys
ENSCSEG00000013464	cpsf1	84	83.140	ENSMEUG00000014922	CPSF1	84	83.140	Notamacropus_eugenii
ENSCSEG00000013464	cpsf1	65	87.368	ENSOPRG00000004693	-	70	87.368	Ochotona_princeps
ENSCSEG00000013464	cpsf1	100	77.839	ENSODEG00000013995	CPSF1	100	77.839	Octodon_degus
ENSCSEG00000013464	cpsf1	100	88.843	ENSONIG00000007676	cpsf1	100	88.704	Oreochromis_niloticus
ENSCSEG00000013464	cpsf1	63	75.714	ENSOANG00000010716	CPSF1	89	75.714	Ornithorhynchus_anatinus
ENSCSEG00000013464	cpsf1	99	87.582	ENSORLG00000013544	cpsf1	100	85.422	Oryzias_latipes
ENSCSEG00000013464	cpsf1	99	87.655	ENSORLG00020021693	cpsf1	100	85.490	Oryzias_latipes_hni
ENSCSEG00000013464	cpsf1	99	87.655	ENSORLG00015009979	cpsf1	100	85.490	Oryzias_latipes_hsok
ENSCSEG00000013464	cpsf1	99	87.737	ENSOMEG00000011849	cpsf1	100	86.016	Oryzias_melastigma
ENSCSEG00000013464	cpsf1	100	77.770	ENSOGAG00000000315	CPSF1	100	77.632	Otolemur_garnettii
ENSCSEG00000013464	cpsf1	100	77.424	ENSPPAG00000019280	CPSF1	100	78.281	Pan_paniscus
ENSCSEG00000013464	cpsf1	100	77.424	ENSPTRG00000049288	-	100	78.281	Pan_troglodytes
ENSCSEG00000013464	cpsf1	100	76.106	ENSPTRG00000051253	-	100	78.281	Pan_troglodytes
ENSCSEG00000013464	cpsf1	99	77.866	ENSPANG00000015005	CPSF1	99	78.080	Papio_anubis
ENSCSEG00000013464	cpsf1	100	84.834	ENSPKIG00000002582	cpsf1	100	85.584	Paramormyrops_kingsleyae
ENSCSEG00000013464	cpsf1	100	78.030	ENSPCIG00000009035	CPSF1	100	78.030	Phascolarctos_cinereus
ENSCSEG00000013464	cpsf1	99	87.372	ENSPFOG00000012870	cpsf1	100	84.339	Poecilia_formosa
ENSCSEG00000013464	cpsf1	99	87.372	ENSPREG00000016307	cpsf1	100	84.690	Poecilia_reticulata
ENSCSEG00000013464	cpsf1	100	70.242	ENSPPYG00000018973	CPSF1	100	70.519	Pongo_abelii
ENSCSEG00000013464	cpsf1	94	82.955	ENSPCAG00000011541	CPSF1	94	82.955	Procavia_capensis
ENSCSEG00000013464	cpsf1	100	74.202	ENSPCOG00000020001	CPSF1	100	76.852	Propithecus_coquereli
ENSCSEG00000013464	cpsf1	90	85.429	ENSPVAG00000006761	CPSF1	91	85.429	Pteropus_vampyrus
ENSCSEG00000013464	cpsf1	99	89.781	ENSPNYG00000004906	cpsf1	100	88.329	Pundamilia_nyererei
ENSCSEG00000013464	cpsf1	100	80.796	ENSPNAG00000024395	cpsf1	100	80.726	Pygocentrus_nattereri
ENSCSEG00000013464	cpsf1	100	78.001	ENSRNOG00000030705	Cpsf1	100	77.793	Rattus_norvegicus
ENSCSEG00000013464	cpsf1	100	77.370	ENSRBIG00000044907	CPSF1	100	77.509	Rhinopithecus_bieti
ENSCSEG00000013464	cpsf1	100	77.439	ENSRROG00000044861	CPSF1	100	77.578	Rhinopithecus_roxellana
ENSCSEG00000013464	cpsf1	99	77.850	ENSSBOG00000027177	CPSF1	99	78.065	Saimiri_boliviensis_boliviensis
ENSCSEG00000013464	cpsf1	100	77.755	ENSSHAG00000006500	CPSF1	100	77.893	Sarcophilus_harrisii
ENSCSEG00000013464	cpsf1	99	84.509	ENSSFOG00015004606	cpsf1	100	85.131	Scleropages_formosus
ENSCSEG00000013464	cpsf1	99	89.788	ENSSMAG00000020547	cpsf1	100	86.847	Scophthalmus_maximus
ENSCSEG00000013464	cpsf1	100	90.470	ENSSDUG00000001100	cpsf1	100	90.399	Seriola_dumerili
ENSCSEG00000013464	cpsf1	100	90.126	ENSSLDG00000003619	cpsf1	100	90.126	Seriola_lalandi_dorsalis
ENSCSEG00000013464	cpsf1	92	74.272	ENSSARG00000003643	CPSF1	92	75.403	Sorex_araneus
ENSCSEG00000013464	cpsf1	99	79.927	ENSSPUG00000014396	CPSF1	99	80.620	Sphenodon_punctatus
ENSCSEG00000013464	cpsf1	99	89.635	ENSSPAG00000005349	cpsf1	100	87.127	Stegastes_partitus
ENSCSEG00000013464	cpsf1	100	76.833	ENSSSCG00000005906	CPSF1	100	76.763	Sus_scrofa
ENSCSEG00000013464	cpsf1	99	88.282	ENSTRUG00000013134	cpsf1	97	88.210	Takifugu_rubripes
ENSCSEG00000013464	cpsf1	100	86.616	ENSTNIG00000014027	cpsf1	100	86.067	Tetraodon_nigroviridis
ENSCSEG00000013464	cpsf1	76	74.806	ENSTBEG00000001756	CPSF1	91	71.107	Tupaia_belangeri
ENSCSEG00000013464	cpsf1	89	82.556	ENSTTRG00000001937	CPSF1	90	82.556	Tursiops_truncatus
ENSCSEG00000013464	cpsf1	99	77.996	ENSUAMG00000006476	CPSF1	98	77.953	Ursus_americanus
ENSCSEG00000013464	cpsf1	100	86.341	ENSXCOG00000003608	cpsf1	100	86.411	Xiphophorus_couchianus
ENSCSEG00000013464	cpsf1	100	86.103	ENSXMAG00000005798	cpsf1	100	86.103	Xiphophorus_maculatus