EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000013475 (Gene tree)
Gene ID: 103377081
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 12474 bases
Position: chr3:7408379-7420852
Accession: 103377081
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000021123	RRM_1	PF00076.22	4.4e-15	1	2
ENSCSEP00000021123	RRM_1	PF00076.22	4.4e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000021395	-	1470	XM_008307722	ENSCSEP00000021123	489 (aa)	XP_008305944	-

Gene Model

Click here to download ENSCSEG00000013475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000013475's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000013475	rnpc3	95	54.004	ENSG00000185946	RNPC3	96	57.143	Homo_sapiens
ENSCSEG00000013475	rnpc3	99	76.984	ENSAPOG00000017371	rnpc3	99	76.984	Acanthochromis_polyacanthus
ENSCSEG00000013475	rnpc3	95	54.601	ENSAMEG00000001694	RNPC3	93	54.990	Ailuropoda_melanoleuca
ENSCSEG00000013475	rnpc3	99	72.332	ENSACIG00000021043	rnpc3	99	72.332	Amphilophus_citrinellus
ENSCSEG00000013475	rnpc3	99	75.246	ENSAOCG00000014052	rnpc3	98	75.246	Amphiprion_ocellaris
ENSCSEG00000013475	rnpc3	99	75.049	ENSAPEG00000008739	rnpc3	98	75.049	Amphiprion_percula
ENSCSEG00000013475	rnpc3	99	75.147	ENSATEG00000021263	rnpc3	99	75.147	Anabas_testudineus
ENSCSEG00000013475	rnpc3	88	54.955	ENSAPLG00000015605	RNPC3	99	56.376	Anas_platyrhynchos
ENSCSEG00000013475	rnpc3	97	54.397	ENSACAG00000002029	RNPC3	96	52.352	Anolis_carolinensis
ENSCSEG00000013475	rnpc3	95	53.689	ENSANAG00000019950	RNPC3	97	52.559	Aotus_nancymaae
ENSCSEG00000013475	rnpc3	99	76.471	ENSACLG00000014702	rnpc3	99	76.471	Astatotilapia_calliptera
ENSCSEG00000013475	rnpc3	99	63.636	ENSAMXG00000033372	rnpc3	52	68.165	Astyanax_mexicanus
ENSCSEG00000013475	rnpc3	96	54.361	ENSBTAG00000019091	RNPC3	94	54.361	Bos_taurus
ENSCSEG00000013475	rnpc3	95	54.132	ENSCJAG00000035686	RNPC3	94	54.082	Callithrix_jacchus
ENSCSEG00000013475	rnpc3	96	54.286	ENSCAFG00000019972	RNPC3	94	54.582	Canis_familiaris
ENSCSEG00000013475	rnpc3	96	54.694	ENSCAFG00020011300	RNPC3	94	54.694	Canis_lupus_dingo
ENSCSEG00000013475	rnpc3	96	54.545	ENSCHIG00000020361	RNPC3	94	54.049	Capra_hircus
ENSCSEG00000013475	rnpc3	96	53.955	ENSTSYG00000030256	RNPC3	94	54.990	Carlito_syrichta
ENSCSEG00000013475	rnpc3	85	47.727	ENSCAPG00000013600	RNPC3	97	46.774	Cavia_aperea
ENSCSEG00000013475	rnpc3	96	53.644	ENSCPOG00000031638	RNPC3	94	53.644	Cavia_porcellus
ENSCSEG00000013475	rnpc3	95	53.689	ENSCCAG00000024301	RNPC3	97	52.559	Cebus_capucinus
ENSCSEG00000013475	rnpc3	95	53.893	ENSCATG00000002086	RNPC3	94	54.472	Cercocebus_atys
ENSCSEG00000013475	rnpc3	95	42.405	ENSCATG00000035930	-	51	50.211	Cercocebus_atys
ENSCSEG00000013475	rnpc3	96	51.181	ENSCLAG00000005169	RNPC3	94	51.318	Chinchilla_lanigera
ENSCSEG00000013475	rnpc3	95	53.689	ENSCSAG00000001519	RNPC3	94	54.251	Chlorocebus_sabaeus
ENSCSEG00000013475	rnpc3	97	55.758	ENSCPBG00000028311	RNPC3	96	56.942	Chrysemys_picta_bellii
ENSCSEG00000013475	rnpc3	94	36.667	ENSCSAVG00000002800	-	81	51.007	Ciona_savignyi
ENSCSEG00000013475	rnpc3	95	53.893	ENSCANG00000031444	RNPC3	94	54.472	Colobus_angolensis_palliatus
ENSCSEG00000013475	rnpc3	96	54.990	ENSCGRG00001019276	Rnpc3	94	54.990	Cricetulus_griseus_chok1gshd
ENSCSEG00000013475	rnpc3	89	54.305	ENSCGRG00000000053	Rnpc3	99	54.305	Cricetulus_griseus_crigri
ENSCSEG00000013475	rnpc3	99	74.023	ENSCVAG00000002645	rnpc3	99	74.023	Cyprinodon_variegatus
ENSCSEG00000013475	rnpc3	99	63.601	ENSDARG00000011247	rnpc3	99	63.796	Danio_rerio
ENSCSEG00000013475	rnpc3	96	53.213	ENSDNOG00000044555	-	94	53.106	Dasypus_novemcinctus
ENSCSEG00000013475	rnpc3	96	53.815	ENSDNOG00000047498	-	94	53.707	Dasypus_novemcinctus
ENSCSEG00000013475	rnpc3	97	53.846	ENSDORG00000027343	Rnpc3	95	53.846	Dipodomys_ordii
ENSCSEG00000013475	rnpc3	98	50.389	ENSEBUG00000002068	rnpc3	97	49.903	Eptatretus_burgeri
ENSCSEG00000013475	rnpc3	96	54.397	ENSEASG00005015957	RNPC3	94	54.268	Equus_asinus_asinus
ENSCSEG00000013475	rnpc3	96	54.234	ENSECAG00000021148	RNPC3	94	54.234	Equus_caballus
ENSCSEG00000013475	rnpc3	99	64.516	ENSELUG00000002264	rnpc3	99	62.429	Esox_lucius
ENSCSEG00000013475	rnpc3	96	54.786	ENSFCAG00000024312	RNPC3	94	54.990	Felis_catus
ENSCSEG00000013475	rnpc3	88	57.079	ENSFALG00000002580	RNPC3	99	57.079	Ficedula_albicollis
ENSCSEG00000013475	rnpc3	96	54.251	ENSFDAG00000019948	RNPC3	94	54.049	Fukomys_damarensis
ENSCSEG00000013475	rnpc3	99	70.968	ENSFHEG00000020647	rnpc3	99	70.968	Fundulus_heteroclitus
ENSCSEG00000013475	rnpc3	99	66.466	ENSGMOG00000019213	rnpc3	99	66.398	Gadus_morhua
ENSCSEG00000013475	rnpc3	97	55.556	ENSGALG00000005162	RNPC3	89	55.556	Gallus_gallus
ENSCSEG00000013475	rnpc3	99	72.530	ENSGAFG00000017236	rnpc3	99	72.134	Gambusia_affinis
ENSCSEG00000013475	rnpc3	99	75.198	ENSGACG00000002048	rnpc3	99	73.735	Gasterosteus_aculeatus
ENSCSEG00000013475	rnpc3	97	56.883	ENSGAGG00000008438	RNPC3	95	56.883	Gopherus_agassizii
ENSCSEG00000013475	rnpc3	95	47.479	ENSGGOG00000026201	-	93	47.269	Gorilla_gorilla
ENSCSEG00000013475	rnpc3	81	75.706	ENSHBUG00000015966	rnpc3	84	71.186	Haplochromis_burtoni
ENSCSEG00000013475	rnpc3	96	53.644	ENSHGLG00000001708	RNPC3	94	53.644	Heterocephalus_glaber_female
ENSCSEG00000013475	rnpc3	96	53.644	ENSHGLG00100003005	RNPC3	94	53.644	Heterocephalus_glaber_male
ENSCSEG00000013475	rnpc3	97	71.919	ENSHCOG00000017135	rnpc3	99	71.315	Hippocampus_comes
ENSCSEG00000013475	rnpc3	98	62.725	ENSIPUG00000002916	rnpc3	99	63.126	Ictalurus_punctatus
ENSCSEG00000013475	rnpc3	95	54.192	ENSSTOG00000025020	RNPC3	94	54.192	Ictidomys_tridecemlineatus
ENSCSEG00000013475	rnpc3	96	53.768	ENSJJAG00000010203	Rnpc3	95	53.988	Jaculus_jaculus
ENSCSEG00000013475	rnpc3	99	74.349	ENSKMAG00000017358	rnpc3	99	74.349	Kryptolebias_marmoratus
ENSCSEG00000013475	rnpc3	98	74.400	ENSLBEG00000024901	rnpc3	97	74.400	Labrus_bergylta
ENSCSEG00000013475	rnpc3	98	57.000	ENSLACG00000005720	RNPC3	91	57.000	Latimeria_chalumnae
ENSCSEG00000013475	rnpc3	98	61.078	ENSLOCG00000007986	rnpc3	98	57.285	Lepisosteus_oculatus
ENSCSEG00000013475	rnpc3	96	53.265	ENSLAFG00000032342	RNPC3	94	53.265	Loxodonta_africana
ENSCSEG00000013475	rnpc3	95	41.438	ENSMFAG00000002917	-	53	50.847	Macaca_fascicularis
ENSCSEG00000013475	rnpc3	95	53.893	ENSMFAG00000002004	RNPC3	94	54.472	Macaca_fascicularis
ENSCSEG00000013475	rnpc3	76	53.000	ENSMMUG00000002098	-	84	52.913	Macaca_mulatta
ENSCSEG00000013475	rnpc3	95	53.689	ENSMMUG00000018039	RNPC3	94	54.268	Macaca_mulatta
ENSCSEG00000013475	rnpc3	95	50.615	ENSMNEG00000033950	RNPC3	94	51.220	Macaca_nemestrina
ENSCSEG00000013475	rnpc3	75	44.327	ENSMNEG00000029209	-	53	48.333	Macaca_nemestrina
ENSCSEG00000013475	rnpc3	95	42.620	ENSMLEG00000034644	-	94	42.974	Mandrillus_leucophaeus
ENSCSEG00000013475	rnpc3	95	53.893	ENSMLEG00000033628	RNPC3	94	54.472	Mandrillus_leucophaeus
ENSCSEG00000013475	rnpc3	99	69.020	ENSMAMG00000007496	rnpc3	99	69.020	Mastacembelus_armatus
ENSCSEG00000013475	rnpc3	99	73.438	ENSMZEG00005020233	rnpc3	99	73.438	Maylandia_zebra
ENSCSEG00000013475	rnpc3	88	55.799	ENSMGAG00000006381	RNPC3	99	55.799	Meleagris_gallopavo
ENSCSEG00000013475	rnpc3	96	54.918	ENSMAUG00000001358	Rnpc3	94	54.918	Mesocricetus_auratus
ENSCSEG00000013475	rnpc3	96	54.694	ENSMICG00000029591	RNPC3	95	54.767	Microcebus_murinus
ENSCSEG00000013475	rnpc3	95	54.733	ENSMOCG00000013423	Rnpc3	93	54.733	Microtus_ochrogaster
ENSCSEG00000013475	rnpc3	99	69.838	ENSMMOG00000005309	rnpc3	99	66.397	Mola_mola
ENSCSEG00000013475	rnpc3	96	54.733	ENSMODG00000002946	RNPC3	95	54.490	Monodelphis_domestica
ENSCSEG00000013475	rnpc3	99	71.850	ENSMALG00000015471	rnpc3	99	71.850	Monopterus_albus
ENSCSEG00000013475	rnpc3	96	55.102	MGP_CAROLIEiJ_G0025555	Rnpc3	96	55.102	Mus_caroli
ENSCSEG00000013475	rnpc3	96	54.878	ENSMUSG00000027981	Rnpc3	99	53.863	Mus_musculus
ENSCSEG00000013475	rnpc3	96	54.675	MGP_PahariEiJ_G0027001	Rnpc3	96	54.675	Mus_pahari
ENSCSEG00000013475	rnpc3	96	54.878	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.878	Mus_spretus
ENSCSEG00000013475	rnpc3	96	54.839	ENSMPUG00000007349	RNPC3	94	54.839	Mustela_putorius_furo
ENSCSEG00000013475	rnpc3	96	54.694	ENSMLUG00000028743	RNPC3	94	54.694	Myotis_lucifugus
ENSCSEG00000013475	rnpc3	96	53.862	ENSNGAG00000010939	Rnpc3	95	54.065	Nannospalax_galili
ENSCSEG00000013475	rnpc3	99	76.876	ENSNBRG00000012196	rnpc3	96	76.876	Neolamprologus_brichardi
ENSCSEG00000013475	rnpc3	95	54.004	ENSNLEG00000012013	RNPC3	94	53.955	Nomascus_leucogenys
ENSCSEG00000013475	rnpc3	96	54.898	ENSODEG00000007612	RNPC3	94	53.170	Octodon_degus
ENSCSEG00000013475	rnpc3	99	74.606	ENSONIG00000004770	rnpc3	100	76.171	Oreochromis_niloticus
ENSCSEG00000013475	rnpc3	92	55.202	ENSOANG00000008220	RNPC3	100	55.202	Ornithorhynchus_anatinus
ENSCSEG00000013475	rnpc3	96	54.728	ENSOCUG00000004016	RNPC3	94	54.637	Oryctolagus_cuniculus
ENSCSEG00000013475	rnpc3	97	75.869	ENSORLG00000005694	rnpc3	99	74.849	Oryzias_latipes
ENSCSEG00000013475	rnpc3	97	76.074	ENSORLG00020005513	rnpc3	98	76.074	Oryzias_latipes_hni
ENSCSEG00000013475	rnpc3	97	76.074	ENSORLG00015002179	rnpc3	99	75.050	Oryzias_latipes_hsok
ENSCSEG00000013475	rnpc3	97	75.407	ENSOMEG00000017737	rnpc3	98	75.407	Oryzias_melastigma
ENSCSEG00000013475	rnpc3	96	54.747	ENSOGAG00000026182	RNPC3	94	54.747	Otolemur_garnettii
ENSCSEG00000013475	rnpc3	96	54.545	ENSOARG00000018719	RNPC3	94	54.049	Ovis_aries
ENSCSEG00000013475	rnpc3	95	54.415	ENSPPAG00000037459	RNPC3	94	54.361	Pan_paniscus
ENSCSEG00000013475	rnpc3	95	47.808	ENSPPAG00000030278	-	95	48.049	Pan_paniscus
ENSCSEG00000013475	rnpc3	96	54.786	ENSPPRG00000020246	RNPC3	94	54.858	Panthera_pardus
ENSCSEG00000013475	rnpc3	96	54.786	ENSPTIG00000009887	RNPC3	96	54.858	Panthera_tigris_altaica
ENSCSEG00000013475	rnpc3	94	47.669	ENSPTRG00000044227	-	95	47.500	Pan_troglodytes
ENSCSEG00000013475	rnpc3	95	53.689	ENSPTRG00000033902	RNPC3	94	54.268	Pan_troglodytes
ENSCSEG00000013475	rnpc3	95	44.142	ENSPANG00000029957	-	51	50.000	Papio_anubis
ENSCSEG00000013475	rnpc3	95	54.004	ENSPANG00000012137	RNPC3	94	54.582	Papio_anubis
ENSCSEG00000013475	rnpc3	97	63.126	ENSPKIG00000008828	rnpc3	97	59.519	Paramormyrops_kingsleyae
ENSCSEG00000013475	rnpc3	64	56.231	ENSPSIG00000007396	RNPC3	99	56.231	Pelodiscus_sinensis
ENSCSEG00000013475	rnpc3	97	63.492	ENSPMGG00000011742	rnpc3	98	62.698	Periophthalmus_magnuspinnatus
ENSCSEG00000013475	rnpc3	89	54.525	ENSPEMG00000020112	Rnpc3	99	54.525	Peromyscus_maniculatus_bairdii
ENSCSEG00000013475	rnpc3	96	54.490	ENSPCIG00000004415	-	95	54.490	Phascolarctos_cinereus
ENSCSEG00000013475	rnpc3	99	73.016	ENSPFOG00000009895	rnpc3	99	73.016	Poecilia_formosa
ENSCSEG00000013475	rnpc3	99	72.619	ENSPLAG00000012023	rnpc3	99	72.619	Poecilia_latipinna
ENSCSEG00000013475	rnpc3	99	73.214	ENSPMEG00000003663	rnpc3	99	73.214	Poecilia_mexicana
ENSCSEG00000013475	rnpc3	99	72.619	ENSPREG00000010206	rnpc3	99	72.817	Poecilia_reticulata
ENSCSEG00000013475	rnpc3	79	49.635	ENSPPYG00000001102	RNPC3	93	49.878	Pongo_abelii
ENSCSEG00000013475	rnpc3	99	76.471	ENSPNYG00000020603	rnpc3	99	76.471	Pundamilia_nyererei
ENSCSEG00000013475	rnpc3	96	54.786	ENSRNOG00000017310	Rnpc3	94	54.786	Rattus_norvegicus
ENSCSEG00000013475	rnpc3	95	51.129	ENSRBIG00000043897	RNPC3	94	50.507	Rhinopithecus_bieti
ENSCSEG00000013475	rnpc3	95	53.893	ENSRROG00000032334	RNPC3	94	54.472	Rhinopithecus_roxellana
ENSCSEG00000013475	rnpc3	95	53.799	ENSSBOG00000024473	RNPC3	94	54.379	Saimiri_boliviensis_boliviensis
ENSCSEG00000013475	rnpc3	96	53.939	ENSSHAG00000011859	RNPC3	95	53.939	Sarcophilus_harrisii
ENSCSEG00000013475	rnpc3	97	66.735	ENSSFOG00015013055	rnpc3	99	66.735	Scleropages_formosus
ENSCSEG00000013475	rnpc3	99	74.514	ENSSMAG00000020346	rnpc3	99	74.319	Scophthalmus_maximus
ENSCSEG00000013475	rnpc3	99	78.711	ENSSDUG00000006600	rnpc3	99	79.102	Seriola_dumerili
ENSCSEG00000013475	rnpc3	99	78.516	ENSSLDG00000007979	rnpc3	99	78.516	Seriola_lalandi_dorsalis
ENSCSEG00000013475	rnpc3	96	53.320	ENSSPUG00000008539	-	96	53.479	Sphenodon_punctatus
ENSCSEG00000013475	rnpc3	96	50.725	ENSSPUG00000003872	-	92	51.139	Sphenodon_punctatus
ENSCSEG00000013475	rnpc3	97	72.449	ENSSPAG00000005633	rnpc3	98	76.122	Stegastes_partitus
ENSCSEG00000013475	rnpc3	96	53.069	ENSSSCG00000037254	RNPC3	94	54.990	Sus_scrofa
ENSCSEG00000013475	rnpc3	88	57.788	ENSTGUG00000004795	-	99	57.788	Taeniopygia_guttata
ENSCSEG00000013475	rnpc3	99	71.713	ENSTNIG00000018963	rnpc3	99	71.713	Tetraodon_nigroviridis
ENSCSEG00000013475	rnpc3	96	54.286	ENSUMAG00000007775	RNPC3	96	54.158	Ursus_maritimus
ENSCSEG00000013475	rnpc3	96	54.694	ENSVVUG00000000331	RNPC3	94	54.694	Vulpes_vulpes
ENSCSEG00000013475	rnpc3	96	44.556	ENSXETG00000025027	rnpc3	96	43.976	Xenopus_tropicalis
ENSCSEG00000013475	rnpc3	52	77.273	ENSXCOG00000005013	rnpc3	99	72.978	Xiphophorus_couchianus
ENSCSEG00000013475	rnpc3	99	73.123	ENSXMAG00000006495	rnpc3	99	72.925	Xiphophorus_maculatus