EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000013483 (Gene tree)
Gene ID: 103379453
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 20433 bases
Position: chr6:99144-119576
Accession: 103379453
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000021110	HRDC	PF00570.23	5.4e-14	1	1
ENSCSEP00000021128	HRDC	PF00570.23	5.4e-14	1	1
ENSCSEP00000021110	ResIII	PF04851.15	3.2e-05	1	1
ENSCSEP00000021128	ResIII	PF04851.15	3.2e-05	1	1
ENSCSEP00000021110	BDHCT	PF08072.11	1.1e-17	1	1
ENSCSEP00000021128	BDHCT	PF08072.11	1.1e-17	1	1
ENSCSEP00000021110	DEAD	PF00270.29	3.2e-18	1	1
ENSCSEP00000021128	DEAD	PF00270.29	3.2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000021382	-	7645	XM_017032923	ENSCSEP00000021110	1300 (aa)	XP_016888412	UPI0007DC9615
ENSCSET00000021400	-	8726	-	ENSCSEP00000021128	1300 (aa)	XP_024912183	UPI0007DC9615

Gene Model

Click here to download ENSCSEG00000013483's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03440	Homologous recombination	KEGG
csem03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000013483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000013483	blm	80	53.565	ENSG00000197299	BLM	89	48.547	Homo_sapiens
ENSCSEG00000013483	blm	99	68.393	ENSAPOG00000017966	blm	95	67.873	Acanthochromis_polyacanthus
ENSCSEG00000013483	blm	60	64.736	ENSAMEG00000013843	BLM	89	48.862	Ailuropoda_melanoleuca
ENSCSEG00000013483	blm	99	67.846	ENSACIG00000023762	blm	93	67.698	Amphilophus_citrinellus
ENSCSEG00000013483	blm	99	68.670	ENSAOCG00000003318	blm	95	68.971	Amphiprion_ocellaris
ENSCSEG00000013483	blm	99	68.209	ENSAPEG00000018105	blm	93	68.507	Amphiprion_percula
ENSCSEG00000013483	blm	99	68.787	ENSATEG00000006421	blm	95	69.012	Anabas_testudineus
ENSCSEG00000013483	blm	60	66.026	ENSACAG00000014275	BLM	74	65.063	Anolis_carolinensis
ENSCSEG00000013483	blm	79	54.089	ENSANAG00000038415	BLM	89	48.308	Aotus_nancymaae
ENSCSEG00000013483	blm	99	67.671	ENSACLG00000020354	blm	95	66.102	Astatotilapia_calliptera
ENSCSEG00000013483	blm	89	59.050	ENSAMXG00000016970	blm	95	55.919	Astyanax_mexicanus
ENSCSEG00000013483	blm	57	38.306	WBGene00001865	him-6	70	40.000	Caenorhabditis_elegans
ENSCSEG00000013483	blm	82	52.867	ENSCJAG00000009803	BLM	89	48.382	Callithrix_jacchus
ENSCSEG00000013483	blm	85	51.871	ENSCAFG00000012385	BLM	89	48.487	Canis_familiaris
ENSCSEG00000013483	blm	85	51.959	ENSCAFG00020016111	BLM	87	67.493	Canis_lupus_dingo
ENSCSEG00000013483	blm	64	62.251	ENSCHIG00000010329	BLM	58	62.456	Capra_hircus
ENSCSEG00000013483	blm	55	70.160	ENSCAPG00000017976	BLM	73	70.160	Cavia_aperea
ENSCSEG00000013483	blm	60	64.541	ENSCPOG00000001761	BLM	56	64.076	Cavia_porcellus
ENSCSEG00000013483	blm	80	53.647	ENSCCAG00000023069	BLM	89	48.760	Cebus_capucinus
ENSCSEG00000013483	blm	84	51.251	ENSCATG00000040609	BLM	87	67.787	Cercocebus_atys
ENSCSEG00000013483	blm	62	63.088	ENSCLAG00000012111	BLM	58	63.260	Chinchilla_lanigera
ENSCSEG00000013483	blm	84	51.165	ENSCSAG00000017040	BLM	89	48.250	Chlorocebus_sabaeus
ENSCSEG00000013483	blm	88	52.361	ENSCHOG00000006255	BLM	85	52.599	Choloepus_hoffmanni
ENSCSEG00000013483	blm	84	53.630	ENSCPBG00000025000	BLM	82	61.744	Chrysemys_picta_bellii
ENSCSEG00000013483	blm	66	64.444	ENSCANG00000034808	BLM	87	64.444	Colobus_angolensis_palliatus
ENSCSEG00000013483	blm	63	62.574	ENSCGRG00001024897	Blm	90	48.967	Cricetulus_griseus_chok1gshd
ENSCSEG00000013483	blm	75	62.357	ENSCVAG00000017583	blm	89	71.875	Cyprinodon_variegatus
ENSCSEG00000013483	blm	99	55.782	ENSDARG00000077089	blm	95	56.550	Danio_rerio
ENSCSEG00000013483	blm	64	61.933	ENSDNOG00000010159	BLM	58	61.933	Dasypus_novemcinctus
ENSCSEG00000013483	blm	63	62.901	ENSDORG00000011033	Blm	99	54.717	Dipodomys_ordii
ENSCSEG00000013483	blm	60	50.202	ENSETEG00000015019	BLM	56	50.202	Echinops_telfairi
ENSCSEG00000013483	blm	75	59.784	ENSEASG00005006727	BLM	77	59.281	Equus_asinus_asinus
ENSCSEG00000013483	blm	64	62.545	ENSECAG00000011405	BLM	58	62.635	Equus_caballus
ENSCSEG00000013483	blm	64	60.304	ENSEEUG00000001434	BLM	60	61.244	Erinaceus_europaeus
ENSCSEG00000013483	blm	99	57.567	ENSELUG00000019098	blm	93	57.803	Esox_lucius
ENSCSEG00000013483	blm	69	65.069	ENSFCAG00000006087	BLM	71	72.784	Felis_catus
ENSCSEG00000013483	blm	80	53.565	ENSFALG00000010981	BLM	74	63.851	Ficedula_albicollis
ENSCSEG00000013483	blm	60	52.465	ENSFDAG00000012658	BLM	53	52.020	Fukomys_damarensis
ENSCSEG00000013483	blm	99	64.891	ENSFHEG00000002553	blm	95	64.366	Fundulus_heteroclitus
ENSCSEG00000013483	blm	97	58.860	ENSGMOG00000016431	blm	98	67.583	Gadus_morhua
ENSCSEG00000013483	blm	84	52.151	ENSGALG00000008256	BLM	60	62.515	Gallus_gallus
ENSCSEG00000013483	blm	99	65.292	ENSGAFG00000001117	blm	95	66.824	Gambusia_affinis
ENSCSEG00000013483	blm	97	66.897	ENSGACG00000010863	blm	100	86.742	Gasterosteus_aculeatus
ENSCSEG00000013483	blm	68	56.489	ENSGAGG00000005383	BLM	80	65.767	Gopherus_agassizii
ENSCSEG00000013483	blm	80	53.473	ENSGGOG00000007710	BLM	91	65.940	Gorilla_gorilla
ENSCSEG00000013483	blm	99	67.442	ENSHBUG00000015943	blm	95	67.667	Haplochromis_burtoni
ENSCSEG00000013483	blm	85	51.560	ENSHGLG00000013231	BLM	79	51.868	Heterocephalus_glaber_female
ENSCSEG00000013483	blm	79	68.756	ENSHCOG00000011455	blm	100	68.436	Hippocampus_comes
ENSCSEG00000013483	blm	83	60.367	ENSIPUG00000000529	blm	83	69.487	Ictalurus_punctatus
ENSCSEG00000013483	blm	59	64.937	ENSSTOG00000005000	BLM	55	64.923	Ictidomys_tridecemlineatus
ENSCSEG00000013483	blm	99	67.812	ENSKMAG00000016608	blm	95	67.964	Kryptolebias_marmoratus
ENSCSEG00000013483	blm	64	76.196	ENSLBEG00000018729	blm	97	77.033	Labrus_bergylta
ENSCSEG00000013483	blm	64	63.647	ENSLACG00000006490	BLM	89	48.770	Latimeria_chalumnae
ENSCSEG00000013483	blm	88	56.845	ENSLOCG00000014302	blm	61	69.632	Lepisosteus_oculatus
ENSCSEG00000013483	blm	80	53.059	ENSMFAG00000042982	BLM	91	66.213	Macaca_fascicularis
ENSCSEG00000013483	blm	80	53.059	ENSMMUG00000019526	BLM	91	66.213	Macaca_mulatta
ENSCSEG00000013483	blm	80	52.968	ENSMNEG00000031251	BLM	91	65.940	Macaca_nemestrina
ENSCSEG00000013483	blm	84	48.791	ENSMLEG00000032934	BLM	89	45.872	Mandrillus_leucophaeus
ENSCSEG00000013483	blm	99	68.333	ENSMAMG00000008726	blm	95	68.385	Mastacembelus_armatus
ENSCSEG00000013483	blm	99	67.097	ENSMZEG00005022323	blm	93	67.197	Maylandia_zebra
ENSCSEG00000013483	blm	63	61.747	ENSMAUG00000008953	Blm	59	61.747	Mesocricetus_auratus
ENSCSEG00000013483	blm	84	51.591	ENSMICG00000034442	BLM	55	67.459	Microcebus_murinus
ENSCSEG00000013483	blm	85	65.345	ENSMOCG00000016367	Blm	81	65.601	Microtus_ochrogaster
ENSCSEG00000013483	blm	99	68.263	ENSMMOG00000006959	blm	95	68.488	Mola_mola
ENSCSEG00000013483	blm	99	68.966	ENSMALG00000007323	blm	95	69.340	Monopterus_albus
ENSCSEG00000013483	blm	60	65.045	MGP_CAROLIEiJ_G0029907	Blm	55	65.090	Mus_caroli
ENSCSEG00000013483	blm	60	65.006	ENSMUSG00000030528	Blm	54	64.751	Mus_musculus
ENSCSEG00000013483	blm	60	65.732	MGP_PahariEiJ_G0013129	Blm	55	65.985	Mus_pahari
ENSCSEG00000013483	blm	60	64.789	MGP_SPRETEiJ_G0031009	Blm	55	64.623	Mus_spretus
ENSCSEG00000013483	blm	60	64.586	ENSMLUG00000014697	BLM	55	64.586	Myotis_lucifugus
ENSCSEG00000013483	blm	64	62.275	ENSNGAG00000001275	Blm	58	62.395	Nannospalax_galili
ENSCSEG00000013483	blm	99	67.347	ENSNBRG00000019702	blm	93	67.671	Neolamprologus_brichardi
ENSCSEG00000013483	blm	80	51.869	ENSNLEG00000012087	BLM	99	51.304	Nomascus_leucogenys
ENSCSEG00000013483	blm	55	66.066	ENSOPRG00000011667	BLM	51	65.928	Ochotona_princeps
ENSCSEG00000013483	blm	60	60.281	ENSODEG00000015373	BLM	75	60.178	Octodon_degus
ENSCSEG00000013483	blm	99	64.265	ENSONIG00000015193	blm	93	64.568	Oreochromis_niloticus
ENSCSEG00000013483	blm	58	65.938	ENSOANG00000009316	-	100	65.633	Ornithorhynchus_anatinus
ENSCSEG00000013483	blm	59	65.593	ENSOCUG00000013969	BLM	79	51.240	Oryctolagus_cuniculus
ENSCSEG00000013483	blm	99	65.038	ENSORLG00000008110	blm	95	65.889	Oryzias_latipes
ENSCSEG00000013483	blm	99	64.586	ENSORLG00020004812	blm	95	65.437	Oryzias_latipes_hni
ENSCSEG00000013483	blm	99	65.139	ENSORLG00015018640	blm	99	70.190	Oryzias_latipes_hsok
ENSCSEG00000013483	blm	99	65.243	ENSOMEG00000023545	blm	95	64.494	Oryzias_melastigma
ENSCSEG00000013483	blm	64	61.603	ENSOGAG00000005708	BLM	59	61.603	Otolemur_garnettii
ENSCSEG00000013483	blm	64	62.603	ENSOARG00000012875	BLM	58	62.810	Ovis_aries
ENSCSEG00000013483	blm	80	53.473	ENSPPAG00000032173	BLM	89	48.394	Pan_paniscus
ENSCSEG00000013483	blm	69	64.943	ENSPPRG00000002471	BLM	71	72.784	Panthera_pardus
ENSCSEG00000013483	blm	69	64.439	ENSPTIG00000016168	BLM	70	72.098	Panthera_tigris_altaica
ENSCSEG00000013483	blm	80	53.199	ENSPTRG00000007460	BLM	89	48.242	Pan_troglodytes
ENSCSEG00000013483	blm	84	51.165	ENSPANG00000018572	BLM	87	67.507	Papio_anubis
ENSCSEG00000013483	blm	87	70.975	ENSPKIG00000008954	blm	81	70.858	Paramormyrops_kingsleyae
ENSCSEG00000013483	blm	76	68.448	ENSPMGG00000006629	blm	99	69.254	Periophthalmus_magnuspinnatus
ENSCSEG00000013483	blm	63	62.972	ENSPEMG00000017348	Blm	59	62.618	Peromyscus_maniculatus_bairdii
ENSCSEG00000013483	blm	50	62.980	ENSPMAG00000000445	blm	87	63.247	Petromyzon_marinus
ENSCSEG00000013483	blm	64	60.981	ENSPCIG00000006609	BLM	58	61.053	Phascolarctos_cinereus
ENSCSEG00000013483	blm	99	65.714	ENSPFOG00000005059	blm	95	65.266	Poecilia_formosa
ENSCSEG00000013483	blm	99	64.834	ENSPLAG00000017344	blm	95	65.116	Poecilia_latipinna
ENSCSEG00000013483	blm	99	65.789	ENSPMEG00000000321	blm	95	65.341	Poecilia_mexicana
ENSCSEG00000013483	blm	98	66.616	ENSPREG00000007715	blm	95	65.742	Poecilia_reticulata
ENSCSEG00000013483	blm	80	52.337	ENSPPYG00000006784	BLM	89	47.568	Pongo_abelii
ENSCSEG00000013483	blm	62	60.964	ENSPCAG00000008960	BLM	67	60.744	Procavia_capensis
ENSCSEG00000013483	blm	84	46.916	ENSPCOG00000000439	BLM	89	43.492	Propithecus_coquereli
ENSCSEG00000013483	blm	74	74.098	ENSPVAG00000011642	BLM	70	74.098	Pteropus_vampyrus
ENSCSEG00000013483	blm	99	59.624	ENSPNYG00000010956	blm	93	59.518	Pundamilia_nyererei
ENSCSEG00000013483	blm	89	60.726	ENSPNAG00000011714	blm	95	56.509	Pygocentrus_nattereri
ENSCSEG00000013483	blm	60	65.605	ENSRNOG00000011213	Blm	55	65.561	Rattus_norvegicus
ENSCSEG00000013483	blm	80	53.242	ENSRBIG00000029656	BLM	91	66.213	Rhinopithecus_bieti
ENSCSEG00000013483	blm	84	51.424	ENSRROG00000037871	BLM	91	66.213	Rhinopithecus_roxellana
ENSCSEG00000013483	blm	69	53.659	ENSSBOG00000030957	BLM	54	68.156	Saimiri_boliviensis_boliviensis
ENSCSEG00000013483	blm	86	51.397	ENSSHAG00000007988	BLM	61	61.279	Sarcophilus_harrisii
ENSCSEG00000013483	blm	71	71.630	ENSSFOG00015015462	blm	76	71.260	Scleropages_formosus
ENSCSEG00000013483	blm	99	69.910	ENSSMAG00000001120	blm	95	70.513	Scophthalmus_maximus
ENSCSEG00000013483	blm	99	70.886	ENSSDUG00000010955	blm	95	71.333	Seriola_dumerili
ENSCSEG00000013483	blm	99	70.395	ENSSLDG00000000634	blm	95	70.790	Seriola_lalandi_dorsalis
ENSCSEG00000013483	blm	60	60.486	ENSSARG00000006398	BLM	59	60.307	Sorex_araneus
ENSCSEG00000013483	blm	84	52.273	ENSSPUG00000000013	BLM	76	61.620	Sphenodon_punctatus
ENSCSEG00000013483	blm	99	69.231	ENSSPAG00000013999	blm	93	68.552	Stegastes_partitus
ENSCSEG00000013483	blm	67	65.625	ENSSSCG00000001816	BLM	72	65.385	Sus_scrofa
ENSCSEG00000013483	blm	84	47.400	ENSTGUG00000009959	-	99	47.751	Taeniopygia_guttata
ENSCSEG00000013483	blm	99	64.955	ENSTRUG00000019860	blm	95	65.489	Takifugu_rubripes
ENSCSEG00000013483	blm	97	63.622	ENSTNIG00000019246	blm	91	64.047	Tetraodon_nigroviridis
ENSCSEG00000013483	blm	60	65.107	ENSTTRG00000016386	BLM	55	64.923	Tursiops_truncatus
ENSCSEG00000013483	blm	60	65.355	ENSUMAG00000009105	BLM	87	72.139	Ursus_maritimus
ENSCSEG00000013483	blm	64	59.053	ENSVPAG00000000085	BLM	58	59.069	Vicugna_pacos
ENSCSEG00000013483	blm	86	51.395	ENSVVUG00000006402	BLM	79	63.711	Vulpes_vulpes
ENSCSEG00000013483	blm	85	53.112	ENSXETG00000007847	blm	80	52.174	Xenopus_tropicalis
ENSCSEG00000013483	blm	99	63.506	ENSXCOG00000020227	blm	93	64.141	Xiphophorus_couchianus
ENSCSEG00000013483	blm	99	65.247	ENSXMAG00000002951	blm	95	66.243	Xiphophorus_maculatus