EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000013881 (Gene tree)
Gene ID: 103379466
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2949 bases
Position: chr6:516381-519329
Accession: 103379466
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000021745	HVSL	PF09749.9	9.8e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000022022	-	1992	XM_008311026	ENSCSEP00000021745	276 (aa)	XP_008309248	UPI0004974147

Gene Model

Click here to download ENSCSEG00000013881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000013881's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000013881	usb1	84	49.785	ENSG00000103005	USB1	100	51.869	Homo_sapiens
ENSCSEG00000013881	usb1	99	67.857	ENSAPOG00000011942	usb1	99	67.857	Acanthochromis_polyacanthus
ENSCSEG00000013881	usb1	84	50.644	ENSAMEG00000017205	USB1	98	48.175	Ailuropoda_melanoleuca
ENSCSEG00000013881	usb1	81	73.094	ENSACIG00000012234	usb1	99	66.545	Amphilophus_citrinellus
ENSCSEG00000013881	usb1	99	68.070	ENSAOCG00000014831	usb1	100	69.149	Amphiprion_ocellaris
ENSCSEG00000013881	usb1	99	67.368	ENSAPEG00000000296	usb1	100	68.440	Amphiprion_percula
ENSCSEG00000013881	usb1	99	67.972	ENSATEG00000009348	usb1	100	69.504	Anabas_testudineus
ENSCSEG00000013881	usb1	80	53.778	ENSAPLG00000002756	USB1	99	54.222	Anas_platyrhynchos
ENSCSEG00000013881	usb1	80	50.667	ENSACAG00000015481	USB1	98	50.667	Anolis_carolinensis
ENSCSEG00000013881	usb1	82	50.877	ENSANAG00000035640	USB1	98	46.715	Aotus_nancymaae
ENSCSEG00000013881	usb1	88	69.835	ENSACLG00000020586	usb1	99	65.836	Astatotilapia_calliptera
ENSCSEG00000013881	usb1	81	63.393	ENSAMXG00000040146	usb1	95	56.849	Astyanax_mexicanus
ENSCSEG00000013881	usb1	92	48.669	ENSBTAG00000015758	USB1	99	48.669	Bos_taurus
ENSCSEG00000013881	usb1	83	51.082	ENSCJAG00000011733	USB1	98	47.810	Callithrix_jacchus
ENSCSEG00000013881	usb1	84	50.000	ENSCAFG00000008556	USB1	71	46.886	Canis_familiaris
ENSCSEG00000013881	usb1	99	46.350	ENSCAFG00020009263	USB1	98	46.350	Canis_lupus_dingo
ENSCSEG00000013881	usb1	99	48.000	ENSCHIG00000024290	USB1	98	48.000	Capra_hircus
ENSCSEG00000013881	usb1	84	48.927	ENSTSYG00000006997	USB1	98	45.985	Carlito_syrichta
ENSCSEG00000013881	usb1	83	40.260	ENSCAPG00000009057	USB1	99	40.260	Cavia_aperea
ENSCSEG00000013881	usb1	99	45.985	ENSCPOG00000014325	USB1	98	45.985	Cavia_porcellus
ENSCSEG00000013881	usb1	82	51.316	ENSCCAG00000022132	USB1	98	47.080	Cebus_capucinus
ENSCSEG00000013881	usb1	84	50.215	ENSCATG00000032174	USB1	98	47.445	Cercocebus_atys
ENSCSEG00000013881	usb1	62	49.711	ENSCLAG00000007363	USB1	98	49.711	Chinchilla_lanigera
ENSCSEG00000013881	usb1	84	50.215	ENSCSAG00000004783	USB1	98	47.810	Chlorocebus_sabaeus
ENSCSEG00000013881	usb1	83	53.680	ENSCPBG00000026943	USB1	98	50.730	Chrysemys_picta_bellii
ENSCSEG00000013881	usb1	80	33.617	ENSCSAVG00000000894	-	92	32.824	Ciona_savignyi
ENSCSEG00000013881	usb1	84	50.644	ENSCANG00000037135	USB1	98	47.985	Colobus_angolensis_palliatus
ENSCSEG00000013881	usb1	99	47.445	ENSCGRG00001011243	USB1	98	47.445	Cricetulus_griseus_chok1gshd
ENSCSEG00000013881	usb1	99	47.445	ENSCGRG00000013252	USB1	98	47.445	Cricetulus_griseus_crigri
ENSCSEG00000013881	usb1	81	68.860	ENSCVAG00000009252	usb1	98	68.860	Cyprinodon_variegatus
ENSCSEG00000013881	usb1	99	57.401	ENSDARG00000003841	usb1	100	57.401	Danio_rerio
ENSCSEG00000013881	usb1	99	46.350	ENSDORG00000001888	Usb1	98	46.715	Dipodomys_ordii
ENSCSEG00000013881	usb1	84	37.917	FBgn0037713	CG16790	100	34.982	Drosophila_melanogaster
ENSCSEG00000013881	usb1	99	40.000	ENSETEG00000019682	USB1	98	40.000	Echinops_telfairi
ENSCSEG00000013881	usb1	80	48.198	ENSEBUG00000005889	usb1	99	39.871	Eptatretus_burgeri
ENSCSEG00000013881	usb1	99	47.636	ENSEASG00005005484	USB1	98	47.636	Equus_asinus_asinus
ENSCSEG00000013881	usb1	99	47.810	ENSECAG00000019493	USB1	89	47.810	Equus_caballus
ENSCSEG00000013881	usb1	62	43.353	ENSEEUG00000000154	USB1	65	43.353	Erinaceus_europaeus
ENSCSEG00000013881	usb1	91	57.540	ENSELUG00000010974	usb1	99	56.727	Esox_lucius
ENSCSEG00000013881	usb1	84	50.000	ENSFCAG00000002693	USB1	98	47.080	Felis_catus
ENSCSEG00000013881	usb1	83	52.609	ENSFALG00000006876	USB1	98	49.451	Ficedula_albicollis
ENSCSEG00000013881	usb1	99	45.985	ENSFDAG00000010052	USB1	98	45.985	Fukomys_damarensis
ENSCSEG00000013881	usb1	88	64.082	ENSFHEG00000012334	usb1	98	64.898	Fundulus_heteroclitus
ENSCSEG00000013881	usb1	80	64.865	ENSGMOG00000004228	usb1	99	64.865	Gadus_morhua
ENSCSEG00000013881	usb1	80	52.018	ENSGALG00000035604	USB1	98	47.445	Gallus_gallus
ENSCSEG00000013881	usb1	99	67.870	ENSGAFG00000021890	usb1	99	67.870	Gambusia_affinis
ENSCSEG00000013881	usb1	99	64.158	ENSGACG00000003257	usb1	100	64.388	Gasterosteus_aculeatus
ENSCSEG00000013881	usb1	99	50.916	ENSGAGG00000022572	USB1	98	50.916	Gopherus_agassizii
ENSCSEG00000013881	usb1	84	49.785	ENSGGOG00000017147	USB1	98	47.445	Gorilla_gorilla
ENSCSEG00000013881	usb1	88	69.835	ENSHBUG00000009823	usb1	99	65.125	Haplochromis_burtoni
ENSCSEG00000013881	usb1	99	47.253	ENSHGLG00000016078	USB1	96	47.253	Heterocephalus_glaber_female
ENSCSEG00000013881	usb1	99	47.253	ENSHGLG00100005562	USB1	96	47.253	Heterocephalus_glaber_male
ENSCSEG00000013881	usb1	99	60.949	ENSHCOG00000015633	usb1	99	61.091	Hippocampus_comes
ENSCSEG00000013881	usb1	99	53.819	ENSIPUG00000008601	usb1	100	54.167	Ictalurus_punctatus
ENSCSEG00000013881	usb1	99	48.175	ENSSTOG00000007548	USB1	98	48.175	Ictidomys_tridecemlineatus
ENSCSEG00000013881	usb1	99	48.727	ENSJJAG00000021859	Usb1	98	48.727	Jaculus_jaculus
ENSCSEG00000013881	usb1	86	71.849	ENSKMAG00000007200	usb1	99	66.904	Kryptolebias_marmoratus
ENSCSEG00000013881	usb1	81	65.198	ENSLBEG00000008452	usb1	83	62.140	Labrus_bergylta
ENSCSEG00000013881	usb1	69	55.208	ENSLACG00000000105	USB1	86	48.996	Latimeria_chalumnae
ENSCSEG00000013881	usb1	99	52.313	ENSLOCG00000000465	usb1	99	52.313	Lepisosteus_oculatus
ENSCSEG00000013881	usb1	99	43.060	ENSLAFG00000002267	USB1	98	43.060	Loxodonta_africana
ENSCSEG00000013881	usb1	84	50.215	ENSMFAG00000003926	USB1	98	47.445	Macaca_fascicularis
ENSCSEG00000013881	usb1	84	50.215	ENSMMUG00000022669	USB1	98	47.445	Macaca_mulatta
ENSCSEG00000013881	usb1	84	49.785	ENSMNEG00000042487	USB1	98	47.080	Macaca_nemestrina
ENSCSEG00000013881	usb1	84	50.215	ENSMLEG00000028756	USB1	98	47.445	Mandrillus_leucophaeus
ENSCSEG00000013881	usb1	99	68.345	ENSMAMG00000015092	usb1	100	68.345	Mastacembelus_armatus
ENSCSEG00000013881	usb1	88	69.835	ENSMZEG00005010008	usb1	99	65.125	Maylandia_zebra
ENSCSEG00000013881	usb1	99	48.364	ENSMAUG00000007832	Usb1	98	48.364	Mesocricetus_auratus
ENSCSEG00000013881	usb1	83	50.649	ENSMICG00000004900	USB1	99	47.909	Microcebus_murinus
ENSCSEG00000013881	usb1	99	49.455	ENSMOCG00000022647	Usb1	98	49.455	Microtus_ochrogaster
ENSCSEG00000013881	usb1	83	72.368	ENSMMOG00000000490	usb1	100	63.799	Mola_mola
ENSCSEG00000013881	usb1	99	46.182	ENSMODG00000014067	USB1	99	48.188	Monodelphis_domestica
ENSCSEG00000013881	usb1	99	66.548	ENSMALG00000005930	usb1	99	66.548	Monopterus_albus
ENSCSEG00000013881	usb1	99	47.636	MGP_CAROLIEiJ_G0031421	Usb1	99	53.571	Mus_caroli
ENSCSEG00000013881	usb1	99	47.636	ENSMUSG00000031792	Usb1	99	53.571	Mus_musculus
ENSCSEG00000013881	usb1	99	46.715	MGP_PahariEiJ_G0023019	Usb1	100	54.701	Mus_pahari
ENSCSEG00000013881	usb1	99	47.636	MGP_SPRETEiJ_G0032540	Usb1	98	47.636	Mus_spretus
ENSCSEG00000013881	usb1	84	50.215	ENSMPUG00000004684	USB1	94	47.445	Mustela_putorius_furo
ENSCSEG00000013881	usb1	83	51.515	ENSMLUG00000007400	USB1	100	51.515	Myotis_lucifugus
ENSCSEG00000013881	usb1	99	47.080	ENSNGAG00000009703	Usb1	98	47.445	Nannospalax_galili
ENSCSEG00000013881	usb1	88	64.050	ENSNBRG00000008747	usb1	99	68.545	Neolamprologus_brichardi
ENSCSEG00000013881	usb1	79	49.083	ENSNLEG00000003340	USB1	98	47.104	Nomascus_leucogenys
ENSCSEG00000013881	usb1	99	47.253	ENSODEG00000016214	USB1	98	47.253	Octodon_degus
ENSCSEG00000013881	usb1	99	65.714	ENSONIG00000011063	usb1	100	65.714	Oreochromis_niloticus
ENSCSEG00000013881	usb1	81	50.667	ENSOANG00000012118	USB1	94	50.667	Ornithorhynchus_anatinus
ENSCSEG00000013881	usb1	99	65.693	ENSORLG00000012479	usb1	99	65.693	Oryzias_latipes
ENSCSEG00000013881	usb1	86	68.908	ENSORLG00020018671	usb1	99	64.964	Oryzias_latipes_hni
ENSCSEG00000013881	usb1	86	69.748	ENSORLG00015009679	usb1	99	65.328	Oryzias_latipes_hsok
ENSCSEG00000013881	usb1	99	68.000	ENSOMEG00000012930	usb1	99	68.000	Oryzias_melastigma
ENSCSEG00000013881	usb1	85	46.809	ENSOGAG00000003273	USB1	98	44.891	Otolemur_garnettii
ENSCSEG00000013881	usb1	86	50.840	ENSOARG00000001107	USB1	91	50.840	Ovis_aries
ENSCSEG00000013881	usb1	84	49.356	ENSPPAG00000042137	USB1	98	47.080	Pan_paniscus
ENSCSEG00000013881	usb1	84	50.000	ENSPPRG00000024797	USB1	98	47.810	Panthera_pardus
ENSCSEG00000013881	usb1	84	50.427	ENSPTIG00000007506	USB1	98	47.810	Panthera_tigris_altaica
ENSCSEG00000013881	usb1	84	46.781	ENSPTRG00000008172	USB1	100	51.869	Pan_troglodytes
ENSCSEG00000013881	usb1	84	50.215	ENSPANG00000025138	USB1	98	47.445	Papio_anubis
ENSCSEG00000013881	usb1	88	58.436	ENSPKIG00000015109	usb1	99	53.378	Paramormyrops_kingsleyae
ENSCSEG00000013881	usb1	81	45.575	ENSPSIG00000004305	USB1	100	45.575	Pelodiscus_sinensis
ENSCSEG00000013881	usb1	99	53.818	ENSPMGG00000017725	usb1	98	54.909	Periophthalmus_magnuspinnatus
ENSCSEG00000013881	usb1	99	46.429	ENSPEMG00000016183	Usb1	98	46.429	Peromyscus_maniculatus_bairdii
ENSCSEG00000013881	usb1	80	49.778	ENSPMAG00000000462	usb1	95	49.778	Petromyzon_marinus
ENSCSEG00000013881	usb1	99	67.509	ENSPFOG00000011130	usb1	99	67.509	Poecilia_formosa
ENSCSEG00000013881	usb1	99	67.148	ENSPLAG00000009820	usb1	99	67.148	Poecilia_latipinna
ENSCSEG00000013881	usb1	99	67.870	ENSPMEG00000006402	usb1	99	67.870	Poecilia_mexicana
ENSCSEG00000013881	usb1	88	68.163	ENSPREG00000001047	usb1	99	69.388	Poecilia_reticulata
ENSCSEG00000013881	usb1	79	45.909	ENSPPYG00000007401	USB1	98	44.061	Pongo_abelii
ENSCSEG00000013881	usb1	86	49.180	ENSPCOG00000022612	USB1	99	47.529	Propithecus_coquereli
ENSCSEG00000013881	usb1	92	48.249	ENSPVAG00000004613	USB1	99	48.249	Pteropus_vampyrus
ENSCSEG00000013881	usb1	99	64.413	ENSPNYG00000022262	usb1	99	64.769	Pundamilia_nyererei
ENSCSEG00000013881	usb1	81	62.054	ENSPNAG00000011736	usb1	100	53.378	Pygocentrus_nattereri
ENSCSEG00000013881	usb1	99	47.636	ENSRNOG00000013216	Usb1	98	47.636	Rattus_norvegicus
ENSCSEG00000013881	usb1	84	45.923	ENSRBIG00000044466	USB1	100	52.336	Rhinopithecus_bieti
ENSCSEG00000013881	usb1	84	50.215	ENSRROG00000029211	USB1	98	47.810	Rhinopithecus_roxellana
ENSCSEG00000013881	usb1	82	51.754	ENSSBOG00000029362	USB1	98	48.540	Saimiri_boliviensis_boliviensis
ENSCSEG00000013881	usb1	79	50.000	ENSSHAG00000006993	USB1	94	49.167	Sarcophilus_harrisii
ENSCSEG00000013881	usb1	87	56.667	ENSSFOG00015023663	usb1	91	51.536	Scleropages_formosus
ENSCSEG00000013881	usb1	93	70.000	ENSSMAG00000015834	usb1	99	68.814	Scophthalmus_maximus
ENSCSEG00000013881	usb1	81	76.682	ENSSDUG00000002949	usb1	99	68.327	Seriola_dumerili
ENSCSEG00000013881	usb1	89	74.494	ENSSLDG00000014174	usb1	99	71.326	Seriola_lalandi_dorsalis
ENSCSEG00000013881	usb1	77	54.206	ENSSPUG00000006741	USB1	100	54.206	Sphenodon_punctatus
ENSCSEG00000013881	usb1	99	65.845	ENSSPAG00000007484	usb1	100	67.254	Stegastes_partitus
ENSCSEG00000013881	usb1	99	47.445	ENSSSCG00000002807	USB1	98	48.727	Sus_scrofa
ENSCSEG00000013881	usb1	76	54.028	ENSTGUG00000004792	USB1	98	47.253	Taeniopygia_guttata
ENSCSEG00000013881	usb1	99	64.260	ENSTRUG00000021069	usb1	100	64.260	Takifugu_rubripes
ENSCSEG00000013881	usb1	99	57.455	ENSTNIG00000000626	usb1	98	57.455	Tetraodon_nigroviridis
ENSCSEG00000013881	usb1	81	38.839	ENSTBEG00000001507	USB1	97	38.839	Tupaia_belangeri
ENSCSEG00000013881	usb1	84	51.073	ENSUAMG00000016823	USB1	98	48.540	Ursus_americanus
ENSCSEG00000013881	usb1	77	52.804	ENSUMAG00000021369	USB1	100	52.804	Ursus_maritimus
ENSCSEG00000013881	usb1	88	48.770	ENSVVUG00000023700	USB1	92	48.739	Vulpes_vulpes
ENSCSEG00000013881	usb1	78	54.378	ENSXETG00000013795	usb1	89	54.260	Xenopus_tropicalis
ENSCSEG00000013881	usb1	93	68.093	ENSXMAG00000024687	usb1	85	66.409	Xiphophorus_maculatus