EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000014220 (Gene tree)
Gene ID: 103388946
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 13437 bases
Position: chr13:20688880-20702316
Accession: 103388946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000022337	EST1	PF10374.9	3.6e-24	1	1
ENSCSEP00000022351	EST1	PF10374.9	4.1e-24	1	1
ENSCSEP00000022351	EST1_DNA_bind	PF10373.9	1.7e-41	1	1
ENSCSEP00000022337	EST1_DNA_bind	PF10373.9	1.2e-40	1	1
ENSCSEP00000022351	PIN_4	PF13638.6	7.6e-06	1	1
ENSCSEP00000022337	PIN_4	PF13638.6	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000022622	-	3039	-	ENSCSEP00000022337	1012 (aa)	-	-
ENSCSET00000022636	-	4623	XM_008324180	ENSCSEP00000022351	1120 (aa)	XP_008322402	UPI000496553F

Gene Model

Click here to download ENSCSEG00000014220's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000014220's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000014220	smg5	92	77.778	ENSG00000198952	SMG5	99	65.598	Homo_sapiens
ENSCSEG00000014220	smg5	100	86.625	ENSAPOG00000019690	smg5	100	87.068	Acanthochromis_polyacanthus
ENSCSEG00000014220	smg5	91	77.805	ENSAMEG00000014458	SMG5	100	63.215	Ailuropoda_melanoleuca
ENSCSEG00000014220	smg5	100	84.889	ENSACIG00000001353	smg5	100	85.274	Amphilophus_citrinellus
ENSCSEG00000014220	smg5	100	86.933	ENSAOCG00000019483	smg5	100	87.289	Amphiprion_ocellaris
ENSCSEG00000014220	smg5	100	86.756	ENSAPEG00000022949	smg5	100	87.111	Amphiprion_percula
ENSCSEG00000014220	smg5	100	85.380	ENSATEG00000005348	smg5	100	86.505	Anabas_testudineus
ENSCSEG00000014220	smg5	98	65.411	ENSAPLG00000010263	SMG5	100	64.831	Anas_platyrhynchos
ENSCSEG00000014220	smg5	92	77.778	ENSANAG00000032899	SMG5	99	65.467	Aotus_nancymaae
ENSCSEG00000014220	smg5	100	84.588	ENSACLG00000009311	smg5	100	85.372	Astatotilapia_calliptera
ENSCSEG00000014220	smg5	100	78.044	ENSAMXG00000024616	smg5	100	77.451	Astyanax_mexicanus
ENSCSEG00000014220	smg5	94	46.501	ENSBTAG00000021747	-	99	39.261	Bos_taurus
ENSCSEG00000014220	smg5	99	64.390	ENSBTAG00000009435	SMG5	99	64.860	Bos_taurus
ENSCSEG00000014220	smg5	92	77.778	ENSCJAG00000005684	SMG5	99	65.467	Callithrix_jacchus
ENSCSEG00000014220	smg5	99	64.990	ENSCAFG00000016839	SMG5	92	77.381	Canis_familiaris
ENSCSEG00000014220	smg5	99	64.990	ENSCAFG00020006061	SMG5	92	77.381	Canis_lupus_dingo
ENSCSEG00000014220	smg5	99	64.844	ENSCHIG00000007709	SMG5	99	64.860	Capra_hircus
ENSCSEG00000014220	smg5	99	39.510	ENSCHIG00000006323	-	99	39.208	Capra_hircus
ENSCSEG00000014220	smg5	99	65.588	ENSTSYG00000004099	SMG5	99	65.294	Carlito_syrichta
ENSCSEG00000014220	smg5	94	49.278	ENSCAPG00000003631	SMG5	100	50.361	Cavia_aperea
ENSCSEG00000014220	smg5	92	77.305	ENSCPOG00000015696	SMG5	99	65.625	Cavia_porcellus
ENSCSEG00000014220	smg5	92	77.778	ENSCCAG00000027409	SMG5	99	65.175	Cebus_capucinus
ENSCSEG00000014220	smg5	92	78.014	ENSCATG00000030539	SMG5	99	65.500	Cercocebus_atys
ENSCSEG00000014220	smg5	92	77.778	ENSCLAG00000003983	SMG5	99	65.430	Chinchilla_lanigera
ENSCSEG00000014220	smg5	92	78.014	ENSCSAG00000002120	SMG5	99	65.500	Chlorocebus_sabaeus
ENSCSEG00000014220	smg5	54	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSCSEG00000014220	smg5	93	63.444	ENSCPBG00000025848	SMG5	100	63.920	Chrysemys_picta_bellii
ENSCSEG00000014220	smg5	93	33.264	ENSCING00000008706	-	99	32.474	Ciona_intestinalis
ENSCSEG00000014220	smg5	99	63.548	ENSCANG00000029208	SMG5	99	62.791	Colobus_angolensis_palliatus
ENSCSEG00000014220	smg5	99	65.686	ENSCGRG00001006336	Smg5	99	64.516	Cricetulus_griseus_chok1gshd
ENSCSEG00000014220	smg5	98	65.569	ENSCGRG00000005111	Smg5	100	64.343	Cricetulus_griseus_crigri
ENSCSEG00000014220	smg5	100	76.476	ENSCVAG00000000529	smg5	100	76.575	Cyprinodon_variegatus
ENSCSEG00000014220	smg5	100	76.903	ENSDARG00000041481	smg5	100	76.486	Danio_rerio
ENSCSEG00000014220	smg5	99	62.598	ENSDNOG00000000051	SMG5	99	62.598	Dasypus_novemcinctus
ENSCSEG00000014220	smg5	92	32.623	ENSDNOG00000039862	-	85	38.356	Dasypus_novemcinctus
ENSCSEG00000014220	smg5	99	65.403	ENSDORG00000010382	Smg5	99	64.694	Dipodomys_ordii
ENSCSEG00000014220	smg5	60	30.973	FBgn0019890	Smg5	52	30.973	Drosophila_melanogaster
ENSCSEG00000014220	smg5	76	81.553	ENSETEG00000010336	SMG5	82	81.553	Echinops_telfairi
ENSCSEG00000014220	smg5	91	45.226	ENSEBUG00000003739	smg5	99	45.675	Eptatretus_burgeri
ENSCSEG00000014220	smg5	99	65.430	ENSEASG00005019122	SMG5	99	65.034	Equus_asinus_asinus
ENSCSEG00000014220	smg5	99	65.400	ENSECAG00000001389	SMG5	99	64.907	Equus_caballus
ENSCSEG00000014220	smg5	72	78.754	ENSEEUG00000012690	SMG5	75	78.754	Erinaceus_europaeus
ENSCSEG00000014220	smg5	100	79.505	ENSELUG00000012585	smg5	100	78.938	Esox_lucius
ENSCSEG00000014220	smg5	99	64.793	ENSFCAG00000011783	SMG5	99	64.706	Felis_catus
ENSCSEG00000014220	smg5	57	68.814	ENSFALG00000001166	-	96	66.610	Ficedula_albicollis
ENSCSEG00000014220	smg5	98	65.065	ENSFDAG00000017388	SMG5	100	64.665	Fukomys_damarensis
ENSCSEG00000014220	smg5	86	87.302	ENSFHEG00000013939	smg5	93	87.302	Fundulus_heteroclitus
ENSCSEG00000014220	smg5	100	76.594	ENSGMOG00000007310	smg5	100	77.145	Gadus_morhua
ENSCSEG00000014220	smg5	99	64.408	ENSGALG00000029918	-	99	64.265	Gallus_gallus
ENSCSEG00000014220	smg5	92	86.581	ENSGAFG00000021691	smg5	99	86.581	Gambusia_affinis
ENSCSEG00000014220	smg5	100	81.665	ENSGACG00000013142	smg5	100	81.754	Gasterosteus_aculeatus
ENSCSEG00000014220	smg5	99	64.326	ENSGAGG00000016131	SMG5	99	63.973	Gopherus_agassizii
ENSCSEG00000014220	smg5	92	77.778	ENSGGOG00000010932	SMG5	99	65.500	Gorilla_gorilla
ENSCSEG00000014220	smg5	100	84.752	ENSHBUG00000008654	smg5	100	85.714	Haplochromis_burtoni
ENSCSEG00000014220	smg5	99	64.844	ENSHGLG00000019152	SMG5	99	64.279	Heterocephalus_glaber_female
ENSCSEG00000014220	smg5	90	65.689	ENSHGLG00100015948	SMG5	99	65.054	Heterocephalus_glaber_male
ENSCSEG00000014220	smg5	99	63.168	ENSHCOG00000010229	smg5	93	82.609	Hippocampus_comes
ENSCSEG00000014220	smg5	100	76.418	ENSIPUG00000006624	Smg5	100	76.043	Ictalurus_punctatus
ENSCSEG00000014220	smg5	99	65.725	ENSSTOG00000001780	SMG5	99	65.166	Ictidomys_tridecemlineatus
ENSCSEG00000014220	smg5	99	64.831	ENSJJAG00000022763	Smg5	99	64.763	Jaculus_jaculus
ENSCSEG00000014220	smg5	100	84.103	ENSKMAG00000014586	smg5	100	84.991	Kryptolebias_marmoratus
ENSCSEG00000014220	smg5	100	85.752	ENSLBEG00000002145	smg5	100	86.465	Labrus_bergylta
ENSCSEG00000014220	smg5	99	57.820	ENSLACG00000010521	SMG5	99	57.725	Latimeria_chalumnae
ENSCSEG00000014220	smg5	91	85.442	ENSLOCG00000008380	smg5	99	69.990	Lepisosteus_oculatus
ENSCSEG00000014220	smg5	99	64.746	ENSLAFG00000006241	SMG5	99	64.418	Loxodonta_africana
ENSCSEG00000014220	smg5	92	78.014	ENSMFAG00000045357	SMG5	99	65.500	Macaca_fascicularis
ENSCSEG00000014220	smg5	92	78.014	ENSMMUG00000000090	SMG5	99	65.558	Macaca_mulatta
ENSCSEG00000014220	smg5	92	78.014	ENSMNEG00000044425	SMG5	99	65.500	Macaca_nemestrina
ENSCSEG00000014220	smg5	92	68.085	ENSMLEG00000041192	SMG5	99	60.116	Mandrillus_leucophaeus
ENSCSEG00000014220	smg5	100	85.574	ENSMAMG00000010683	smg5	100	85.485	Mastacembelus_armatus
ENSCSEG00000014220	smg5	100	79.828	ENSMZEG00005015815	smg5	100	79.637	Maylandia_zebra
ENSCSEG00000014220	smg5	62	76.300	ENSMZEG00005016543	smg5	100	76.320	Maylandia_zebra
ENSCSEG00000014220	smg5	55	41.563	ENSMAUG00000000043	-	77	46.292	Mesocricetus_auratus
ENSCSEG00000014220	smg5	99	64.902	ENSMAUG00000010381	Smg5	99	64.321	Mesocricetus_auratus
ENSCSEG00000014220	smg5	92	78.333	ENSMICG00000002257	SMG5	99	65.882	Microcebus_murinus
ENSCSEG00000014220	smg5	99	65.260	ENSMOCG00000016590	Smg5	99	64.293	Microtus_ochrogaster
ENSCSEG00000014220	smg5	100	81.083	ENSMMOG00000017199	smg5	100	81.883	Mola_mola
ENSCSEG00000014220	smg5	97	32.020	ENSMODG00000004511	-	81	35.248	Monodelphis_domestica
ENSCSEG00000014220	smg5	87	65.444	ENSMODG00000016901	SMG5	98	64.811	Monodelphis_domestica
ENSCSEG00000014220	smg5	78	35.396	ENSMODG00000004532	-	86	35.396	Monodelphis_domestica
ENSCSEG00000014220	smg5	76	34.961	ENSMODG00000010675	-	88	34.961	Monodelphis_domestica
ENSCSEG00000014220	smg5	78	35.433	ENSMODG00000004735	-	87	35.433	Monodelphis_domestica
ENSCSEG00000014220	smg5	100	83.897	ENSMALG00000010375	smg5	100	84.253	Monopterus_albus
ENSCSEG00000014220	smg5	99	65.717	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSCSEG00000014220	smg5	99	65.815	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSCSEG00000014220	smg5	99	65.656	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSCSEG00000014220	smg5	99	65.717	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSCSEG00000014220	smg5	93	63.836	ENSMPUG00000004546	SMG5	92	75.833	Mustela_putorius_furo
ENSCSEG00000014220	smg5	99	65.132	ENSMLUG00000008518	SMG5	99	64.626	Myotis_lucifugus
ENSCSEG00000014220	smg5	99	64.798	ENSNGAG00000020706	Smg5	99	64.545	Nannospalax_galili
ENSCSEG00000014220	smg5	98	39.461	ENSNGAG00000012101	-	98	38.938	Nannospalax_galili
ENSCSEG00000014220	smg5	97	81.212	ENSNBRG00000004332	smg5	98	81.111	Neolamprologus_brichardi
ENSCSEG00000014220	smg5	92	78.014	ENSNLEG00000012439	SMG5	99	65.598	Nomascus_leucogenys
ENSCSEG00000014220	smg5	99	64.251	ENSMEUG00000012834	SMG5	99	63.751	Notamacropus_eugenii
ENSCSEG00000014220	smg5	99	65.064	ENSOPRG00000009152	SMG5	99	64.769	Ochotona_princeps
ENSCSEG00000014220	smg5	99	64.941	ENSODEG00000012237	SMG5	99	65.527	Octodon_degus
ENSCSEG00000014220	smg5	100	84.752	ENSONIG00000008632	smg5	100	85.993	Oreochromis_niloticus
ENSCSEG00000014220	smg5	98	64.935	ENSOCUG00000012886	SMG5	100	65.404	Oryctolagus_cuniculus
ENSCSEG00000014220	smg5	82	45.000	ENSOCUG00000023338	-	86	45.000	Oryctolagus_cuniculus
ENSCSEG00000014220	smg5	100	80.872	ENSORLG00000016239	smg5	100	81.317	Oryzias_latipes
ENSCSEG00000014220	smg5	100	80.783	ENSORLG00020013127	smg5	100	81.406	Oryzias_latipes_hni
ENSCSEG00000014220	smg5	100	80.516	ENSORLG00015019014	smg5	100	81.317	Oryzias_latipes_hsok
ENSCSEG00000014220	smg5	84	80.508	ENSOMEG00000021330	smg5	93	80.410	Oryzias_melastigma
ENSCSEG00000014220	smg5	92	77.088	ENSOGAG00000004966	SMG5	99	64.665	Otolemur_garnettii
ENSCSEG00000014220	smg5	99	64.844	ENSOARG00000005778	SMG5	99	64.860	Ovis_aries
ENSCSEG00000014220	smg5	99	39.961	ENSOARG00000011963	-	99	39.706	Ovis_aries
ENSCSEG00000014220	smg5	92	77.305	ENSPPAG00000011996	SMG5	99	65.306	Pan_paniscus
ENSCSEG00000014220	smg5	91	78.109	ENSPPRG00000011901	SMG5	100	63.936	Panthera_pardus
ENSCSEG00000014220	smg5	97	60.812	ENSPTIG00000007892	SMG5	98	60.303	Panthera_tigris_altaica
ENSCSEG00000014220	smg5	92	77.541	ENSPTRG00000049282	-	99	65.403	Pan_troglodytes
ENSCSEG00000014220	smg5	92	77.541	ENSPTRG00000023925	SMG5	99	65.403	Pan_troglodytes
ENSCSEG00000014220	smg5	92	78.014	ENSPANG00000011201	SMG5	99	65.500	Papio_anubis
ENSCSEG00000014220	smg5	100	76.019	ENSPKIG00000009402	smg5	100	76.214	Paramormyrops_kingsleyae
ENSCSEG00000014220	smg5	98	66.210	ENSPSIG00000015198	SMG5	100	66.077	Pelodiscus_sinensis
ENSCSEG00000014220	smg5	100	70.703	ENSPMGG00000010465	smg5	100	70.337	Periophthalmus_magnuspinnatus
ENSCSEG00000014220	smg5	99	66.078	ENSPEMG00000001819	Smg5	99	64.809	Peromyscus_maniculatus_bairdii
ENSCSEG00000014220	smg5	99	49.042	ENSPMAG00000000410	smg5	92	61.483	Petromyzon_marinus
ENSCSEG00000014220	smg5	99	65.324	ENSPCIG00000018938	SMG5	99	64.717	Phascolarctos_cinereus
ENSCSEG00000014220	smg5	100	83.066	ENSPFOG00000010191	smg5	100	83.081	Poecilia_formosa
ENSCSEG00000014220	smg5	100	83.333	ENSPLAG00000009332	smg5	100	83.170	Poecilia_latipinna
ENSCSEG00000014220	smg5	100	83.066	ENSPMEG00000014105	smg5	100	82.992	Poecilia_mexicana
ENSCSEG00000014220	smg5	100	83.066	ENSPREG00000017713	smg5	100	83.348	Poecilia_reticulata
ENSCSEG00000014220	smg5	92	77.778	ENSPPYG00000000723	SMG5	99	65.598	Pongo_abelii
ENSCSEG00000014220	smg5	77	78.889	ENSPCAG00000008412	SMG5	81	78.889	Procavia_capensis
ENSCSEG00000014220	smg5	99	65.554	ENSPCOG00000004741	SMG5	99	65.524	Propithecus_coquereli
ENSCSEG00000014220	smg5	99	58.668	ENSPVAG00000016748	SMG5	99	58.317	Pteropus_vampyrus
ENSCSEG00000014220	smg5	100	84.527	ENSPNYG00000013397	smg5	100	85.411	Pundamilia_nyererei
ENSCSEG00000014220	smg5	100	76.923	ENSPNAG00000028363	smg5	100	76.937	Pygocentrus_nattereri
ENSCSEG00000014220	smg5	99	65.521	ENSRNOG00000019590	Smg5	99	64.516	Rattus_norvegicus
ENSCSEG00000014220	smg5	92	78.251	ENSRBIG00000027428	SMG5	99	65.598	Rhinopithecus_bieti
ENSCSEG00000014220	smg5	92	78.251	ENSRROG00000030035	SMG5	99	65.500	Rhinopithecus_roxellana
ENSCSEG00000014220	smg5	92	78.014	ENSSBOG00000033339	SMG5	99	65.467	Saimiri_boliviensis_boliviensis
ENSCSEG00000014220	smg5	76	42.211	ENSSHAG00000009572	-	78	42.211	Sarcophilus_harrisii
ENSCSEG00000014220	smg5	80	36.300	ENSSHAG00000000561	-	88	36.667	Sarcophilus_harrisii
ENSCSEG00000014220	smg5	98	64.712	ENSSHAG00000014163	SMG5	100	63.395	Sarcophilus_harrisii
ENSCSEG00000014220	smg5	57	35.381	ENSSHAG00000000935	-	83	35.468	Sarcophilus_harrisii
ENSCSEG00000014220	smg5	99	76.990	ENSSFOG00015024175	smg5	99	76.878	Scleropages_formosus
ENSCSEG00000014220	smg5	100	86.655	ENSSMAG00000013059	smg5	100	87.200	Scophthalmus_maximus
ENSCSEG00000014220	smg5	100	87.611	ENSSDUG00000007122	smg5	100	87.611	Seriola_dumerili
ENSCSEG00000014220	smg5	100	87.567	ENSSLDG00000011418	smg5	100	88.011	Seriola_lalandi_dorsalis
ENSCSEG00000014220	smg5	85	68.705	ENSSARG00000012484	SMG5	94	68.705	Sorex_araneus
ENSCSEG00000014220	smg5	93	63.964	ENSSPUG00000002260	SMG5	100	63.847	Sphenodon_punctatus
ENSCSEG00000014220	smg5	100	86.372	ENSSPAG00000014266	smg5	100	86.903	Stegastes_partitus
ENSCSEG00000014220	smg5	99	65.622	ENSSSCG00000006490	-	100	64.828	Sus_scrofa
ENSCSEG00000014220	smg5	99	50.739	ENSSSCG00000039308	-	99	50.541	Sus_scrofa
ENSCSEG00000014220	smg5	99	67.351	ENSTGUG00000003748	-	99	66.602	Taeniopygia_guttata
ENSCSEG00000014220	smg5	100	77.926	ENSTRUG00000012580	smg5	100	77.926	Takifugu_rubripes
ENSCSEG00000014220	smg5	99	79.043	ENSTNIG00000010303	smg5	99	78.978	Tetraodon_nigroviridis
ENSCSEG00000014220	smg5	57	83.744	ENSTBEG00000002777	SMG5	59	83.744	Tupaia_belangeri
ENSCSEG00000014220	smg5	99	61.719	ENSTTRG00000001401	SMG5	99	61.193	Tursiops_truncatus
ENSCSEG00000014220	smg5	92	76.611	ENSUAMG00000013721	SMG5	92	77.327	Ursus_americanus
ENSCSEG00000014220	smg5	91	74.752	ENSUMAG00000018041	SMG5	95	72.834	Ursus_maritimus
ENSCSEG00000014220	smg5	92	68.317	ENSVPAG00000009446	SMG5	99	57.086	Vicugna_pacos
ENSCSEG00000014220	smg5	99	65.123	ENSVVUG00000005887	SMG5	99	64.475	Vulpes_vulpes
ENSCSEG00000014220	smg5	79	54.545	ENSXETG00000033791	SMG5	99	55.709	Xenopus_tropicalis
ENSCSEG00000014220	smg5	91	88.649	ENSXCOG00000004379	smg5	100	88.649	Xiphophorus_couchianus
ENSCSEG00000014220	smg5	100	83.105	ENSXMAG00000013499	smg5	100	83.122	Xiphophorus_maculatus