EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000014272 (Gene tree)
Gene ID: 103378294
Gene Symbol: -
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4121 bases
Position: chr4:14394045-14398165
Accession: 103378294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000022422	RRM_1	PF00076.22	2.4e-32	1	2
ENSCSEP00000022422	RRM_1	PF00076.22	2.4e-32	2	2
ENSCSEP00000022407	RRM_1	PF00076.22	3.4e-32	1	2
ENSCSEP00000022407	RRM_1	PF00076.22	3.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000022708	-	690	-	ENSCSEP00000022422	229 (aa)	-	-
ENSCSET00000022692	-	1165	XM_008309458	ENSCSEP00000022407	250 (aa)	XP_008307680	UPI000495DA0E

Gene Model

Click here to download ENSCSEG00000014272's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG
csem05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000014272's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000014272	-	50	48.800	ENSCSEG00000019778	SRSF6	89	48.000
ENSCSEG00000014272	-	65	48.571	ENSCSEG00000003801	srsf5b	59	46.591
ENSCSEG00000014272	-	78	83.173	ENSCSEG00000009973	-	79	83.173
ENSCSEG00000014272	-	67	48.588	ENSCSEG00000010058	srsf4	74	51.200
ENSCSEG00000014272	-	76	70.857	ENSCSEG00000015663	srsf9	78	70.857
ENSCSEG00000014272	-	67	43.548	ENSCSEG00000008109	srsf5a	58	43.011

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000014272	-	98	84.553	ENSG00000136450	SRSF1	94	93.443	Homo_sapiens
ENSCSEG00000014272	-	81	90.270	ENSAPOG00000008542	-	80	90.452	Acanthochromis_polyacanthus
ENSCSEG00000014272	-	99	90.612	ENSAPOG00000002748	-	100	90.612	Acanthochromis_polyacanthus
ENSCSEG00000014272	-	81	86.559	ENSAMEG00000002635	SRSF1	77	89.785	Ailuropoda_melanoleuca
ENSCSEG00000014272	-	82	94.271	ENSACIG00000008091	srsf1a	83	95.312	Amphilophus_citrinellus
ENSCSEG00000014272	-	99	91.020	ENSAOCG00000010671	-	100	91.020	Amphiprion_ocellaris
ENSCSEG00000014272	-	78	89.950	ENSAOCG00000000337	-	80	90.452	Amphiprion_ocellaris
ENSCSEG00000014272	-	99	91.020	ENSAPEG00000009915	-	100	91.020	Amphiprion_percula
ENSCSEG00000014272	-	78	89.950	ENSAPEG00000023352	-	79	90.452	Amphiprion_percula
ENSCSEG00000014272	-	82	93.782	ENSATEG00000022403	-	100	89.879	Anabas_testudineus
ENSCSEG00000014272	-	84	83.756	ENSATEG00000021567	-	80	87.435	Anabas_testudineus
ENSCSEG00000014272	-	81	87.565	ENSACAG00000005542	-	78	92.347	Anolis_carolinensis
ENSCSEG00000014272	-	98	84.553	ENSANAG00000020583	-	93	91.176	Aotus_nancymaae
ENSCSEG00000014272	-	82	66.489	ENSANAG00000025417	-	73	69.189	Aotus_nancymaae
ENSCSEG00000014272	-	95	82.845	ENSAMXG00000035996	srsf1a	79	92.424	Astyanax_mexicanus
ENSCSEG00000014272	-	54	77.419	ENSAMXG00000024373	-	72	77.987	Astyanax_mexicanus
ENSCSEG00000014272	-	98	84.553	ENSBTAG00000014766	SRSF1	78	91.327	Bos_taurus
ENSCSEG00000014272	-	98	84.553	ENSCJAG00000041713	-	93	91.176	Callithrix_jacchus
ENSCSEG00000014272	-	81	80.829	ENSCJAG00000008111	-	86	83.163	Callithrix_jacchus
ENSCSEG00000014272	-	98	84.553	ENSCAFG00000017430	SRSF1	76	91.327	Canis_familiaris
ENSCSEG00000014272	-	98	84.553	ENSCAFG00020025632	-	76	91.327	Canis_lupus_dingo
ENSCSEG00000014272	-	81	86.528	ENSCHIG00000010787	SRSF1	78	91.327	Capra_hircus
ENSCSEG00000014272	-	98	84.553	ENSTSYG00000013899	-	93	91.176	Carlito_syrichta
ENSCSEG00000014272	-	98	84.553	ENSCPOG00000032681	-	78	91.327	Cavia_porcellus
ENSCSEG00000014272	-	98	84.553	ENSCCAG00000029484	-	93	91.176	Cebus_capucinus
ENSCSEG00000014272	-	98	84.553	ENSCATG00000042294	-	93	91.176	Cercocebus_atys
ENSCSEG00000014272	-	98	84.553	ENSCLAG00000014707	-	78	91.327	Chinchilla_lanigera
ENSCSEG00000014272	-	98	83.740	ENSCSAG00000005642	-	76	90.306	Chlorocebus_sabaeus
ENSCSEG00000014272	-	81	86.528	ENSCHOG00000001899	SRSF1	78	91.327	Choloepus_hoffmanni
ENSCSEG00000014272	-	98	85.772	ENSCPBG00000009851	-	78	92.857	Chrysemys_picta_bellii
ENSCSEG00000014272	-	98	84.553	ENSCANG00000029726	-	93	91.176	Colobus_angolensis_palliatus
ENSCSEG00000014272	-	98	84.553	ENSCGRG00001000670	Srsf1	76	91.327	Cricetulus_griseus_chok1gshd
ENSCSEG00000014272	-	98	84.553	ENSCGRG00000005590	Srsf1	78	91.327	Cricetulus_griseus_crigri
ENSCSEG00000014272	-	99	91.429	ENSCVAG00000018617	-	100	91.429	Cyprinodon_variegatus
ENSCSEG00000014272	-	78	88.718	ENSCVAG00000005458	-	90	88.525	Cyprinodon_variegatus
ENSCSEG00000014272	-	78	92.857	ENSDARG00000017843	srsf1b	79	92.857	Danio_rerio
ENSCSEG00000014272	-	81	85.714	ENSDARG00000057691	srsf1a	99	90.052	Danio_rerio
ENSCSEG00000014272	-	98	84.553	ENSDNOG00000011737	-	76	91.327	Dasypus_novemcinctus
ENSCSEG00000014272	-	98	84.553	ENSDORG00000015082	Srsf1	78	91.327	Dipodomys_ordii
ENSCSEG00000014272	-	73	90.164	ENSETEG00000005349	-	62	89.071	Echinops_telfairi
ENSCSEG00000014272	-	98	84.553	ENSEASG00005002922	-	76	91.327	Equus_asinus_asinus
ENSCSEG00000014272	-	81	86.528	ENSECAG00000016654	SRSF1	78	91.327	Equus_caballus
ENSCSEG00000014272	-	73	91.257	ENSEEUG00000009255	-	62	90.164	Erinaceus_europaeus
ENSCSEG00000014272	-	100	86.454	ENSELUG00000021646	srsf1a	100	86.454	Esox_lucius
ENSCSEG00000014272	-	98	84.553	ENSFCAG00000002250	-	90	89.674	Felis_catus
ENSCSEG00000014272	-	78	94.340	ENSFALG00000005062	-	76	75.130	Ficedula_albicollis
ENSCSEG00000014272	-	98	84.553	ENSFDAG00000010646	-	78	91.327	Fukomys_damarensis
ENSCSEG00000014272	-	99	91.020	ENSFHEG00000003174	srsf1a	100	91.020	Fundulus_heteroclitus
ENSCSEG00000014272	-	83	92.105	ENSGMOG00000014787	-	80	91.892	Gadus_morhua
ENSCSEG00000014272	-	81	88.083	ENSGALG00000005525	SRSF1	78	92.857	Gallus_gallus
ENSCSEG00000014272	-	81	88.108	ENSGACG00000020621	srsf1b	78	88.108	Gasterosteus_aculeatus
ENSCSEG00000014272	-	98	85.772	ENSGAGG00000022965	-	76	92.857	Gopherus_agassizii
ENSCSEG00000014272	-	98	84.553	ENSGGOG00000004386	SRSF1	93	91.176	Gorilla_gorilla
ENSCSEG00000014272	-	99	91.393	ENSHBUG00000016788	srsf1a	100	91.393	Haplochromis_burtoni
ENSCSEG00000014272	-	67	91.018	ENSHGLG00000000600	-	76	91.018	Heterocephalus_glaber_female
ENSCSEG00000014272	-	67	91.018	ENSHGLG00000000669	-	76	91.018	Heterocephalus_glaber_female
ENSCSEG00000014272	-	98	84.553	ENSHGLG00100016906	-	78	91.327	Heterocephalus_glaber_male
ENSCSEG00000014272	-	79	90.955	ENSHCOG00000018918	srsf1a	78	93.467	Hippocampus_comes
ENSCSEG00000014272	-	79	89.552	ENSIPUG00000017039	srsf1a	80	92.040	Ictalurus_punctatus
ENSCSEG00000014272	-	78	92.857	ENSIPUG00000008750	srsf1b	78	92.857	Ictalurus_punctatus
ENSCSEG00000014272	-	98	84.553	ENSSTOG00000000243	-	91	89.674	Ictidomys_tridecemlineatus
ENSCSEG00000014272	-	50	85.714	ENSJJAG00000014464	-	92	82.927	Jaculus_jaculus
ENSCSEG00000014272	-	98	84.553	ENSJJAG00000000102	-	78	91.327	Jaculus_jaculus
ENSCSEG00000014272	-	100	96.400	ENSKMAG00000019232	srsf1a	100	96.400	Kryptolebias_marmoratus
ENSCSEG00000014272	-	100	97.200	ENSLBEG00000020864	-	100	97.200	Labrus_bergylta
ENSCSEG00000014272	-	78	84.694	ENSLBEG00000015294	-	79	84.694	Labrus_bergylta
ENSCSEG00000014272	-	81	88.021	ENSLACG00000014160	srsf1a	72	89.583	Latimeria_chalumnae
ENSCSEG00000014272	-	78	92.347	ENSLOCG00000005994	srsf1a	78	92.347	Lepisosteus_oculatus
ENSCSEG00000014272	-	81	90.270	ENSLAFG00000025743	SRSF1	78	91.327	Loxodonta_africana
ENSCSEG00000014272	-	98	84.553	ENSMFAG00000040003	-	93	91.176	Macaca_fascicularis
ENSCSEG00000014272	-	98	84.553	ENSMMUG00000004725	SRSF1	93	91.176	Macaca_mulatta
ENSCSEG00000014272	-	99	81.377	ENSMMUG00000003260	-	93	88.205	Macaca_mulatta
ENSCSEG00000014272	-	99	81.781	ENSMNEG00000015983	-	76	88.776	Macaca_nemestrina
ENSCSEG00000014272	-	98	84.553	ENSMNEG00000027680	-	93	91.176	Macaca_nemestrina
ENSCSEG00000014272	-	81	86.528	ENSMLEG00000040509	SRSF1	78	91.327	Mandrillus_leucophaeus
ENSCSEG00000014272	-	99	80.972	ENSMLEG00000015243	-	76	86.772	Mandrillus_leucophaeus
ENSCSEG00000014272	-	99	91.020	ENSMAMG00000018454	-	100	91.020	Mastacembelus_armatus
ENSCSEG00000014272	-	81	90.374	ENSMAMG00000019687	-	78	90.374	Mastacembelus_armatus
ENSCSEG00000014272	-	81	89.062	ENSMAMG00000019691	-	80	90.306	Mastacembelus_armatus
ENSCSEG00000014272	-	98	84.553	ENSMAUG00000021845	Srsf1	78	91.327	Mesocricetus_auratus
ENSCSEG00000014272	-	98	84.553	ENSMICG00000013639	-	93	91.176	Microcebus_murinus
ENSCSEG00000014272	-	98	84.553	ENSMOCG00000001996	Srsf1	78	91.327	Microtus_ochrogaster
ENSCSEG00000014272	-	82	95.337	ENSMMOG00000014354	srsf1a	84	95.855	Mola_mola
ENSCSEG00000014272	-	73	92.350	ENSMODG00000014781	-	62	90.164	Monodelphis_domestica
ENSCSEG00000014272	-	88	76.712	ENSMALG00000007763	-	85	78.774	Monopterus_albus
ENSCSEG00000014272	-	82	93.782	ENSMALG00000017129	-	76	94.444	Monopterus_albus
ENSCSEG00000014272	-	98	84.553	MGP_CAROLIEiJ_G0016943	Srsf1	90	89.674	Mus_caroli
ENSCSEG00000014272	-	98	84.553	ENSMUSG00000018379	Srsf1	90	89.674	Mus_musculus
ENSCSEG00000014272	-	98	84.553	MGP_PahariEiJ_G0018074	Srsf1	81	92.941	Mus_pahari
ENSCSEG00000014272	-	98	84.553	MGP_SPRETEiJ_G0017790	Srsf1	90	89.674	Mus_spretus
ENSCSEG00000014272	-	81	86.528	ENSMPUG00000015369	SRSF1	78	91.327	Mustela_putorius_furo
ENSCSEG00000014272	-	81	86.528	ENSMLUG00000011040	SRSF1	78	91.327	Myotis_lucifugus
ENSCSEG00000014272	-	83	86.010	ENSMLUG00000023995	-	77	88.770	Myotis_lucifugus
ENSCSEG00000014272	-	81	86.528	ENSNGAG00000011395	Srsf1	78	91.327	Nannospalax_galili
ENSCSEG00000014272	-	99	78.448	ENSNBRG00000008041	srsf1b	78	81.622	Neolamprologus_brichardi
ENSCSEG00000014272	-	98	84.553	ENSNLEG00000008088	-	93	91.176	Nomascus_leucogenys
ENSCSEG00000014272	-	50	87.200	ENSMEUG00000002783	-	98	86.508	Notamacropus_eugenii
ENSCSEG00000014272	-	54	90.370	ENSOPRG00000001234	-	72	90.370	Ochotona_princeps
ENSCSEG00000014272	-	98	84.553	ENSODEG00000011481	-	78	91.327	Octodon_degus
ENSCSEG00000014272	-	100	91.020	ENSONIG00000013160	-	99	91.020	Oreochromis_niloticus
ENSCSEG00000014272	-	82	89.231	ENSONIG00000004860	-	79	90.306	Oreochromis_niloticus
ENSCSEG00000014272	-	99	65.432	ENSOCUG00000010894	-	75	74.194	Oryctolagus_cuniculus
ENSCSEG00000014272	-	99	91.020	ENSORLG00000004580	srsf1a	100	91.020	Oryzias_latipes
ENSCSEG00000014272	-	99	91.020	ENSORLG00020009456	srsf1a	100	91.020	Oryzias_latipes_hni
ENSCSEG00000014272	-	99	90.612	ENSORLG00015014384	srsf1a	100	90.612	Oryzias_latipes_hsok
ENSCSEG00000014272	-	72	93.296	ENSOMEG00000004106	srsf1a	71	92.737	Oryzias_melastigma
ENSCSEG00000014272	-	86	87.255	ENSOGAG00000025950	-	78	91.327	Otolemur_garnettii
ENSCSEG00000014272	-	81	89.730	ENSOARG00000008323	SRSF1	77	89.730	Ovis_aries
ENSCSEG00000014272	-	98	84.553	ENSPPAG00000043403	-	93	91.176	Pan_paniscus
ENSCSEG00000014272	-	98	84.553	ENSPPRG00000004238	-	90	89.674	Panthera_pardus
ENSCSEG00000014272	-	98	84.553	ENSPTRG00000049077	SRSF1	93	91.176	Pan_troglodytes
ENSCSEG00000014272	-	98	84.553	ENSPANG00000022305	-	93	91.176	Papio_anubis
ENSCSEG00000014272	-	99	68.644	ENSPANG00000030275	-	75	69.681	Papio_anubis
ENSCSEG00000014272	-	78	92.347	ENSPKIG00000012857	srsf1b	78	92.347	Paramormyrops_kingsleyae
ENSCSEG00000014272	-	79	90.863	ENSPKIG00000007204	srsf1a	84	90.722	Paramormyrops_kingsleyae
ENSCSEG00000014272	-	78	85.354	ENSPSIG00000009000	-	72	92.647	Pelodiscus_sinensis
ENSCSEG00000014272	-	96	80.172	ENSPMGG00000005467	-	79	88.360	Periophthalmus_magnuspinnatus
ENSCSEG00000014272	-	100	97.222	ENSPMGG00000013112	-	100	97.222	Periophthalmus_magnuspinnatus
ENSCSEG00000014272	-	98	84.553	ENSPEMG00000021416	Srsf1	78	91.327	Peromyscus_maniculatus_bairdii
ENSCSEG00000014272	-	78	92.347	ENSPCIG00000006076	-	78	91.837	Phascolarctos_cinereus
ENSCSEG00000014272	-	80	87.940	ENSPFOG00000018325	-	69	87.692	Poecilia_formosa
ENSCSEG00000014272	-	80	87.940	ENSPLAG00000008416	srsf1b	78	87.692	Poecilia_latipinna
ENSCSEG00000014272	-	80	87.940	ENSPMEG00000002388	-	78	87.692	Poecilia_mexicana
ENSCSEG00000014272	-	51	93.750	ENSPMEG00000020607	-	99	93.496	Poecilia_mexicana
ENSCSEG00000014272	-	51	93.750	ENSPMEG00000014312	-	99	93.496	Poecilia_mexicana
ENSCSEG00000014272	-	99	91.429	ENSPREG00000009667	srsf1a	100	91.429	Poecilia_reticulata
ENSCSEG00000014272	-	98	84.553	ENSPPYG00000008240	SRSF1	78	91.327	Pongo_abelii
ENSCSEG00000014272	-	81	86.528	ENSPCAG00000005199	SRSF1	78	91.327	Procavia_capensis
ENSCSEG00000014272	-	98	84.553	ENSPCOG00000023654	-	93	91.176	Propithecus_coquereli
ENSCSEG00000014272	-	82	71.212	ENSPCOG00000025736	-	93	72.959	Propithecus_coquereli
ENSCSEG00000014272	-	57	95.714	ENSPVAG00000000519	-	53	95.714	Pteropus_vampyrus
ENSCSEG00000014272	-	81	90.426	ENSPNAG00000014601	srsf1b	78	93.085	Pygocentrus_nattereri
ENSCSEG00000014272	-	95	83.544	ENSPNAG00000022241	srsf1a	79	90.155	Pygocentrus_nattereri
ENSCSEG00000014272	-	81	86.528	ENSRNOG00000050323	Srsf1	78	91.327	Rattus_norvegicus
ENSCSEG00000014272	-	98	84.553	ENSRBIG00000034445	-	93	91.176	Rhinopithecus_bieti
ENSCSEG00000014272	-	98	84.553	ENSRROG00000041506	-	93	91.176	Rhinopithecus_roxellana
ENSCSEG00000014272	-	98	84.553	ENSSBOG00000025377	-	93	91.176	Saimiri_boliviensis_boliviensis
ENSCSEG00000014272	-	78	92.347	ENSSHAG00000002552	-	78	91.837	Sarcophilus_harrisii
ENSCSEG00000014272	-	81	91.099	ENSSFOG00015004800	srsf1a	77	92.670	Scleropages_formosus
ENSCSEG00000014272	-	100	96.000	ENSSMAG00000007018	-	100	96.000	Scophthalmus_maximus
ENSCSEG00000014272	-	78	87.500	ENSSMAG00000009719	-	78	87.000	Scophthalmus_maximus
ENSCSEG00000014272	-	99	75.527	ENSSDUG00000003929	-	83	81.818	Seriola_dumerili
ENSCSEG00000014272	-	100	97.200	ENSSDUG00000011303	-	100	97.200	Seriola_dumerili
ENSCSEG00000014272	-	81	80.108	ENSSLDG00000016868	-	76	82.258	Seriola_lalandi_dorsalis
ENSCSEG00000014272	-	97	67.965	ENSSLDG00000016895	-	77	81.522	Seriola_lalandi_dorsalis
ENSCSEG00000014272	-	100	97.200	ENSSLDG00000010543	-	100	97.200	Seriola_lalandi_dorsalis
ENSCSEG00000014272	-	73	91.257	ENSSARG00000010949	-	62	90.164	Sorex_araneus
ENSCSEG00000014272	-	98	85.772	ENSSPUG00000000804	-	91	91.304	Sphenodon_punctatus
ENSCSEG00000014272	-	79	86.408	ENSSPAG00000014152	-	80	86.408	Stegastes_partitus
ENSCSEG00000014272	-	100	96.800	ENSSPAG00000022562	-	100	96.800	Stegastes_partitus
ENSCSEG00000014272	-	98	84.553	ENSSSCG00000017626	-	78	91.327	Sus_scrofa
ENSCSEG00000014272	-	54	92.647	ENSTGUG00000008416	-	72	92.647	Taeniopygia_guttata
ENSCSEG00000014272	-	99	90.612	ENSTRUG00000003691	srsf1a	100	90.612	Takifugu_rubripes
ENSCSEG00000014272	-	100	90.244	ENSTNIG00000016223	srsf1a	99	90.244	Tetraodon_nigroviridis
ENSCSEG00000014272	-	73	89.617	ENSTBEG00000015378	-	62	89.617	Tupaia_belangeri
ENSCSEG00000014272	-	54	90.370	ENSTTRG00000007310	SRSF1	72	90.370	Tursiops_truncatus
ENSCSEG00000014272	-	81	86.528	ENSUAMG00000009858	SRSF1	78	91.327	Ursus_americanus
ENSCSEG00000014272	-	98	84.553	ENSUMAG00000000455	-	76	91.327	Ursus_maritimus
ENSCSEG00000014272	-	81	86.010	ENSVPAG00000010094	SRSF1	78	90.816	Vicugna_pacos
ENSCSEG00000014272	-	98	84.553	ENSVVUG00000011882	-	76	91.327	Vulpes_vulpes
ENSCSEG00000014272	-	81	89.840	ENSXETG00000008954	srsf1	79	86.792	Xenopus_tropicalis
ENSCSEG00000014272	-	99	91.429	ENSXMAG00000011766	srsf1a	100	91.429	Xiphophorus_maculatus