EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000014277 (Gene tree)
Gene ID: 103379512
Gene Symbol: exosc6
Alias: id:ibd1130|wu:fe17d05|zgc:110071|zgc:77314
Full Name: exosome component 6
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 1049 bases
Position: chr6:1002192-1003240
Accession: 103379512
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000022419	RNase_PH	PF01138.21	1.4e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000022705	-	813	XM_008311075	ENSCSEP00000022419	270 (aa)	XP_024912224	UPI000D630568

Gene Model

Click here to download ENSCSEG00000014277's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000014277's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000014277	exosc6	95	37.591	ENSG00000223496	EXOSC6	97	38.078	Homo_sapiens
ENSCSEG00000014277	exosc6	100	81.022	ENSAPOG00000022329	exosc6	100	81.022	Acanthochromis_polyacanthus
ENSCSEG00000014277	exosc6	100	79.927	ENSACIG00000016636	exosc6	100	79.927	Amphilophus_citrinellus
ENSCSEG00000014277	exosc6	100	82.482	ENSAOCG00000006951	exosc6	100	82.482	Amphiprion_ocellaris
ENSCSEG00000014277	exosc6	100	82.117	ENSAPEG00000022951	exosc6	100	82.117	Amphiprion_percula
ENSCSEG00000014277	exosc6	100	80.586	ENSATEG00000014148	exosc6	100	81.387	Anabas_testudineus
ENSCSEG00000014277	exosc6	95	35.849	ENSANAG00000009362	EXOSC6	100	37.634	Aotus_nancymaae
ENSCSEG00000014277	exosc6	100	78.467	ENSACLG00000022304	exosc6	100	78.467	Astatotilapia_calliptera
ENSCSEG00000014277	exosc6	99	53.285	ENSAMXG00000026269	exosc6	100	53.285	Astyanax_mexicanus
ENSCSEG00000014277	exosc6	95	37.956	ENSBTAG00000053923	EXOSC6	97	37.857	Bos_taurus
ENSCSEG00000014277	exosc6	53	30.405	WBGene00007201	exos-4.1	60	30.405	Caenorhabditis_elegans
ENSCSEG00000014277	exosc6	95	37.226	ENSCJAG00000014559	EXOSC6	100	39.024	Callithrix_jacchus
ENSCSEG00000014277	exosc6	95	37.226	ENSCAFG00020020974	EXOSC6	97	37.857	Canis_lupus_dingo
ENSCSEG00000014277	exosc6	95	37.956	ENSCHIG00000007389	EXOSC6	97	37.857	Capra_hircus
ENSCSEG00000014277	exosc6	99	37.818	ENSCPOG00000037814	-	100	37.818	Cavia_porcellus
ENSCSEG00000014277	exosc6	95	34.686	ENSCPOG00000002371	-	100	35.563	Cavia_porcellus
ENSCSEG00000014277	exosc6	72	41.584	ENSCLAG00000004121	EXOSC6	100	42.478	Chinchilla_lanigera
ENSCSEG00000014277	exosc6	97	37.269	ENSCING00000013458	-	96	37.269	Ciona_intestinalis
ENSCSEG00000014277	exosc6	97	38.235	ENSCSAVG00000002563	-	100	38.235	Ciona_savignyi
ENSCSEG00000014277	exosc6	95	38.686	ENSCGRG00001000899	Exosc6	97	38.571	Cricetulus_griseus_chok1gshd
ENSCSEG00000014277	exosc6	63	74.286	ENSCVAG00000021030	exosc6	87	74.286	Cyprinodon_variegatus
ENSCSEG00000014277	exosc6	63	74.286	ENSCVAG00000021002	EXOSC6	88	74.286	Cyprinodon_variegatus
ENSCSEG00000014277	exosc6	99	57.762	ENSDARG00000036060	exosc6	100	57.762	Danio_rerio
ENSCSEG00000014277	exosc6	85	30.544	ENSDARG00000103432	exosc4	95	30.544	Danio_rerio
ENSCSEG00000014277	exosc6	95	38.321	ENSDNOG00000032035	EXOSC6	100	39.024	Dasypus_novemcinctus
ENSCSEG00000014277	exosc6	95	37.956	ENSEASG00005013410	EXOSC6	97	38.571	Equus_asinus_asinus
ENSCSEG00000014277	exosc6	95	37.956	ENSECAG00000039860	EXOSC6	97	38.571	Equus_caballus
ENSCSEG00000014277	exosc6	100	69.424	ENSELUG00000015515	exosc6	100	69.424	Esox_lucius
ENSCSEG00000014277	exosc6	95	37.591	ENSFCAG00000046021	EXOSC6	97	38.214	Felis_catus
ENSCSEG00000014277	exosc6	100	75.362	ENSFHEG00000017490	exosc6	100	75.362	Fundulus_heteroclitus
ENSCSEG00000014277	exosc6	100	75.547	ENSGMOG00000008151	exosc6	100	75.547	Gadus_morhua
ENSCSEG00000014277	exosc6	83	75.771	ENSGAFG00000015179	exosc6	88	76.190	Gambusia_affinis
ENSCSEG00000014277	exosc6	100	74.818	ENSGACG00000002690	exosc6	100	74.818	Gasterosteus_aculeatus
ENSCSEG00000014277	exosc6	100	79.197	ENSHBUG00000011123	exosc6	100	79.197	Haplochromis_burtoni
ENSCSEG00000014277	exosc6	95	38.686	ENSHGLG00000021313	EXOSC6	100	39.024	Heterocephalus_glaber_female
ENSCSEG00000014277	exosc6	56	47.561	ENSHGLG00100014981	EXOSC6	90	47.561	Heterocephalus_glaber_male
ENSCSEG00000014277	exosc6	100	77.372	ENSHCOG00000012112	exosc6	100	77.372	Hippocampus_comes
ENSCSEG00000014277	exosc6	96	58.555	ENSIPUG00000004761	exosc6	99	60.073	Ictalurus_punctatus
ENSCSEG00000014277	exosc6	95	38.321	ENSSTOG00000006849	EXOSC6	97	38.214	Ictidomys_tridecemlineatus
ENSCSEG00000014277	exosc6	63	47.500	ENSJJAG00000003460	Exosc6	93	46.341	Jaculus_jaculus
ENSCSEG00000014277	exosc6	100	74.359	ENSKMAG00000009821	exosc6	100	74.359	Kryptolebias_marmoratus
ENSCSEG00000014277	exosc6	98	80.669	ENSLBEG00000018680	exosc6	86	81.022	Labrus_bergylta
ENSCSEG00000014277	exosc6	99	64.000	ENSLOCG00000017597	exosc6	99	64.000	Lepisosteus_oculatus
ENSCSEG00000014277	exosc6	95	37.591	ENSMFAG00000035562	EXOSC6	97	38.434	Macaca_fascicularis
ENSCSEG00000014277	exosc6	95	37.226	ENSMMUG00000048384	EXOSC6	97	38.078	Macaca_mulatta
ENSCSEG00000014277	exosc6	100	80.657	ENSMAMG00000016983	exosc6	100	80.657	Mastacembelus_armatus
ENSCSEG00000014277	exosc6	100	78.832	ENSMZEG00005010720	exosc6	100	78.832	Maylandia_zebra
ENSCSEG00000014277	exosc6	95	37.956	ENSMAUG00000008040	Exosc6	97	37.857	Mesocricetus_auratus
ENSCSEG00000014277	exosc6	95	37.956	ENSMICG00000027202	EXOSC6	97	37.857	Microcebus_murinus
ENSCSEG00000014277	exosc6	95	37.956	ENSMOCG00000003020	Exosc6	97	37.857	Microtus_ochrogaster
ENSCSEG00000014277	exosc6	100	73.432	ENSMMOG00000002581	exosc6	100	73.432	Mola_mola
ENSCSEG00000014277	exosc6	97	36.059	ENSMODG00000014523	EXOSC6	97	36.431	Monodelphis_domestica
ENSCSEG00000014277	exosc6	100	76.190	ENSMALG00000007871	exosc6	95	76.190	Monopterus_albus
ENSCSEG00000014277	exosc6	95	38.182	ENSMUSG00000109941	Exosc6	100	38.542	Mus_musculus
ENSCSEG00000014277	exosc6	100	79.927	ENSNBRG00000007400	exosc6	100	79.927	Neolamprologus_brichardi
ENSCSEG00000014277	exosc6	95	37.956	ENSODEG00000020448	EXOSC6	100	38.328	Octodon_degus
ENSCSEG00000014277	exosc6	99	77.193	ENSONIG00000011184	exosc6	100	77.193	Oreochromis_niloticus
ENSCSEG00000014277	exosc6	100	78.388	ENSORLG00000013325	exosc6	100	78.755	Oryzias_latipes
ENSCSEG00000014277	exosc6	100	78.388	ENSORLG00020017597	exosc6	100	78.755	Oryzias_latipes_hni
ENSCSEG00000014277	exosc6	100	78.022	ENSORLG00015007795	exosc6	100	78.022	Oryzias_latipes_hsok
ENSCSEG00000014277	exosc6	98	79.851	ENSOMEG00000014317	exosc6	99	79.851	Oryzias_melastigma
ENSCSEG00000014277	exosc6	95	39.636	ENSOGAG00000034381	EXOSC6	100	39.931	Otolemur_garnettii
ENSCSEG00000014277	exosc6	95	37.591	ENSPPRG00000021385	EXOSC6	97	38.214	Panthera_pardus
ENSCSEG00000014277	exosc6	95	37.591	ENSPTRG00000008296	EXOSC6	97	38.078	Pan_troglodytes
ENSCSEG00000014277	exosc6	95	37.226	ENSPANG00000003331	EXOSC6	97	38.078	Papio_anubis
ENSCSEG00000014277	exosc6	100	59.124	ENSPKIG00000022020	exosc6	100	59.124	Paramormyrops_kingsleyae
ENSCSEG00000014277	exosc6	100	65.818	ENSPMGG00000016974	exosc6	100	65.818	Periophthalmus_magnuspinnatus
ENSCSEG00000014277	exosc6	99	39.789	ENSPCIG00000010685	EXOSC6	90	41.197	Phascolarctos_cinereus
ENSCSEG00000014277	exosc6	96	39.114	ENSPCIG00000006274	-	77	39.194	Phascolarctos_cinereus
ENSCSEG00000014277	exosc6	100	77.372	ENSPFOG00000015869	exosc6	100	77.372	Poecilia_formosa
ENSCSEG00000014277	exosc6	100	77.007	ENSPLAG00000014150	exosc6	100	77.007	Poecilia_latipinna
ENSCSEG00000014277	exosc6	100	77.372	ENSPMEG00000019665	exosc6	100	77.372	Poecilia_mexicana
ENSCSEG00000014277	exosc6	100	77.007	ENSPREG00000019548	exosc6	100	77.007	Poecilia_reticulata
ENSCSEG00000014277	exosc6	95	37.956	ENSPPYG00000007545	EXOSC6	97	38.434	Pongo_abelii
ENSCSEG00000014277	exosc6	97	39.286	ENSPCAG00000012874	EXOSC6	97	39.286	Procavia_capensis
ENSCSEG00000014277	exosc6	95	38.686	ENSPVAG00000000668	EXOSC6	97	38.571	Pteropus_vampyrus
ENSCSEG00000014277	exosc6	100	79.197	ENSPNYG00000010784	exosc6	100	79.197	Pundamilia_nyererei
ENSCSEG00000014277	exosc6	99	57.762	ENSPNAG00000008453	exosc6	100	57.762	Pygocentrus_nattereri
ENSCSEG00000014277	exosc6	95	38.321	ENSRNOG00000018582	Exosc6	100	38.676	Rattus_norvegicus
ENSCSEG00000014277	exosc6	95	35.252	ENSRBIG00000003409	EXOSC6	97	36.491	Rhinopithecus_bieti
ENSCSEG00000014277	exosc6	97	38.909	ENSSHAG00000004175	EXOSC6	97	38.909	Sarcophilus_harrisii
ENSCSEG00000014277	exosc6	100	46.909	ENSSFOG00015011830	exosc6	99	46.909	Scleropages_formosus
ENSCSEG00000014277	exosc6	100	83.636	ENSSMAG00000014550	exosc6	100	83.636	Scophthalmus_maximus
ENSCSEG00000014277	exosc6	100	81.752	ENSSDUG00000021109	exosc6	100	81.752	Seriola_dumerili
ENSCSEG00000014277	exosc6	100	81.655	ENSSLDG00000017776	exosc6	100	81.655	Seriola_lalandi_dorsalis
ENSCSEG00000014277	exosc6	100	82.117	ENSSPAG00000001379	exosc6	100	82.117	Stegastes_partitus
ENSCSEG00000014277	exosc6	95	38.686	ENSSSCG00000002719	EXOSC6	100	39.236	Sus_scrofa
ENSCSEG00000014277	exosc6	98	74.627	ENSTRUG00000023811	exosc6	84	74.627	Takifugu_rubripes
ENSCSEG00000014277	exosc6	99	66.790	ENSTNIG00000004018	exosc6	99	66.790	Tetraodon_nigroviridis
ENSCSEG00000014277	exosc6	99	43.885	ENSXETG00000007667	exosc6	98	44.203	Xenopus_tropicalis
ENSCSEG00000014277	exosc6	100	77.372	ENSXCOG00000013623	exosc6	100	77.372	Xiphophorus_couchianus
ENSCSEG00000014277	exosc6	100	77.372	ENSXMAG00000006280	exosc6	100	77.372	Xiphophorus_maculatus