EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000014344 (Gene tree)
Gene ID: 103395949
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold-inducible RNA-binding protein A
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 11145 bases
Position: chr20:2147672-2158816
Accession: 103395949
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000022519	RRM_1	PF00076.22	2.2e-25	1	1
ENSCSEP00000022504	RRM_1	PF00076.22	2.2e-25	1	1
ENSCSEP00000022511	RRM_1	PF00076.22	2.7e-25	1	1
ENSCSEP00000022523	RRM_1	PF00076.22	3.1e-25	1	1
ENSCSEP00000022539	RRM_1	PF00076.22	3.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000022793	-	2590	-	ENSCSEP00000022504	195 (aa)	XP_024922084	UPI0004980101
ENSCSET00000022812	-	1054	-	ENSCSEP00000022523	215 (aa)	-	-
ENSCSET00000022800	-	709	-	ENSCSEP00000022511	224 (aa)	-	-
ENSCSET00000022829	-	730	-	ENSCSEP00000022539	217 (aa)	-	-
ENSCSET00000022808	-	1425	-	ENSCSEP00000022519	193 (aa)	XP_024922085	UPI000D6268E7

Gene Model

Click here to download ENSCSEG00000014344's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000014344's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000014344	cirbpa	54	38.983	ENSCSEG00000010909	hnrnpd	60	43.750
ENSCSEG00000014344	cirbpa	50	40.278	ENSCSEG00000021095	elavl3	64	40.278
ENSCSEG00000014344	cirbpa	66	36.111	ENSCSEG00000000688	-	78	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000014344	cirbpa	62	64.662	ENSAPOG00000004458	cirbpa	74	68.310	Acanthochromis_polyacanthus
ENSCSEG00000014344	cirbpa	100	63.452	ENSACIG00000016116	cirbpa	100	63.452	Amphilophus_citrinellus
ENSCSEG00000014344	cirbpa	100	62.051	ENSAOCG00000016212	cirbpa	100	59.361	Amphiprion_ocellaris
ENSCSEG00000014344	cirbpa	100	65.285	ENSAPEG00000011989	cirbpa	100	61.290	Amphiprion_percula
ENSCSEG00000014344	cirbpa	100	67.876	ENSATEG00000014985	cirbpa	100	64.767	Anabas_testudineus
ENSCSEG00000014344	cirbpa	100	63.452	ENSACLG00000002094	-	100	64.948	Astatotilapia_calliptera
ENSCSEG00000014344	cirbpa	100	68.205	ENSCVAG00000004853	cirbpa	100	66.667	Cyprinodon_variegatus
ENSCSEG00000014344	cirbpa	78	56.287	ENSDARG00000013351	cirbpb	92	58.559	Danio_rerio
ENSCSEG00000014344	cirbpa	54	59.829	ENSELUG00000004675	-	70	69.231	Esox_lucius
ENSCSEG00000014344	cirbpa	99	64.433	ENSFHEG00000002580	cirbpa	100	62.371	Fundulus_heteroclitus
ENSCSEG00000014344	cirbpa	99	50.000	ENSGMOG00000007179	cirbpb	98	45.614	Gadus_morhua
ENSCSEG00000014344	cirbpa	100	70.256	ENSGAFG00000008654	cirbpa	100	65.641	Gambusia_affinis
ENSCSEG00000014344	cirbpa	100	60.513	ENSGACG00000015206	cirbpa	100	60.513	Gasterosteus_aculeatus
ENSCSEG00000014344	cirbpa	100	62.944	ENSHBUG00000022060	cirbpa	100	64.975	Haplochromis_burtoni
ENSCSEG00000014344	cirbpa	100	61.735	ENSKMAG00000005905	cirbpa	100	59.184	Kryptolebias_marmoratus
ENSCSEG00000014344	cirbpa	58	67.857	ENSLBEG00000027731	-	82	70.297	Labrus_bergylta
ENSCSEG00000014344	cirbpa	100	57.360	ENSLBEG00000000292	cirbpa	100	54.884	Labrus_bergylta
ENSCSEG00000014344	cirbpa	100	63.265	ENSMAMG00000010168	cirbpa	100	65.128	Mastacembelus_armatus
ENSCSEG00000014344	cirbpa	100	62.944	ENSMZEG00005025577	-	100	64.975	Maylandia_zebra
ENSCSEG00000014344	cirbpa	100	64.249	ENSMALG00000020092	cirbpa	100	63.212	Monopterus_albus
ENSCSEG00000014344	cirbpa	100	62.944	ENSNBRG00000019658	cirbpa	100	64.975	Neolamprologus_brichardi
ENSCSEG00000014344	cirbpa	100	62.437	ENSONIG00000010169	cirbpa	100	62.944	Oreochromis_niloticus
ENSCSEG00000014344	cirbpa	100	64.103	ENSORLG00000015433	cirbpa	100	63.590	Oryzias_latipes
ENSCSEG00000014344	cirbpa	100	64.103	ENSORLG00020016909	cirbpa	100	63.590	Oryzias_latipes_hni
ENSCSEG00000014344	cirbpa	100	64.103	ENSORLG00015016636	cirbpa	100	63.590	Oryzias_latipes_hsok
ENSCSEG00000014344	cirbpa	100	62.564	ENSOMEG00000021469	cirbpa	73	61.026	Oryzias_melastigma
ENSCSEG00000014344	cirbpa	99	56.931	ENSPMGG00000017342	cirbpa	95	57.214	Periophthalmus_magnuspinnatus
ENSCSEG00000014344	cirbpa	100	71.939	ENSPFOG00000015653	cirbpa	100	68.367	Poecilia_formosa
ENSCSEG00000014344	cirbpa	99	72.251	ENSPLAG00000011125	cirbpa	100	68.557	Poecilia_latipinna
ENSCSEG00000014344	cirbpa	100	72.308	ENSPMEG00000013878	cirbpa	100	68.718	Poecilia_mexicana
ENSCSEG00000014344	cirbpa	99	70.681	ENSPREG00000018042	cirbpa	98	66.495	Poecilia_reticulata
ENSCSEG00000014344	cirbpa	100	62.944	ENSPNYG00000007198	-	100	64.975	Pundamilia_nyererei
ENSCSEG00000014344	cirbpa	100	59.512	ENSPNAG00000019997	cirbpb	100	54.955	Pygocentrus_nattereri
ENSCSEG00000014344	cirbpa	100	68.687	ENSSMAG00000002412	cirbpa	100	63.636	Scophthalmus_maximus
ENSCSEG00000014344	cirbpa	100	60.000	ENSSDUG00000016099	cirbpa	57	95.652	Seriola_dumerili
ENSCSEG00000014344	cirbpa	50	78.125	ENSSLDG00000011320	cirbpa	50	77.670	Seriola_lalandi_dorsalis
ENSCSEG00000014344	cirbpa	100	59.694	ENSSPAG00000023037	cirbpa	99	56.410	Stegastes_partitus
ENSCSEG00000014344	cirbpa	100	64.433	ENSTRUG00000010187	cirbpa	100	61.616	Takifugu_rubripes
ENSCSEG00000014344	cirbpa	100	62.564	ENSTNIG00000000450	cirbpa	100	61.538	Tetraodon_nigroviridis
ENSCSEG00000014344	cirbpa	99	70.681	ENSXCOG00000008262	cirbpa	92	82.192	Xiphophorus_couchianus
ENSCSEG00000014344	cirbpa	100	70.769	ENSXMAG00000019336	cirbpa	100	66.667	Xiphophorus_maculatus