EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000014900 (Gene tree)
Gene ID: 103393874
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4383 bases
Position: chr2:2618681-2623063
Accession: 103393874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000023365	LSM	PF01423.22	1.5e-20	1	1
ENSCSEP00000023354	LSM	PF01423.22	1.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000023672	-	357	-	ENSCSEP00000023365	118 (aa)	-	-
ENSCSET00000023661	-	1091	XM_008330990	ENSCSEP00000023354	120 (aa)	XP_008329212	-

Gene Model

Click here to download ENSCSEG00000014900's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000014900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000014900	lsm7	51	40.000	ENSCSEG00000003401	snrpg	61	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000014900	lsm7	86	95.050	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSCSEG00000014900	lsm7	80	100.000	ENSAPOG00000015573	lsm7	87	95.050	Acanthochromis_polyacanthus
ENSCSEG00000014900	lsm7	86	94.059	ENSAMEG00000005484	LSM7	99	93.137	Ailuropoda_melanoleuca
ENSCSEG00000014900	lsm7	82	98.969	ENSACIG00000006498	lsm7	77	98.969	Amphilophus_citrinellus
ENSCSEG00000014900	lsm7	87	99.029	ENSAOCG00000001077	lsm7	95	97.143	Amphiprion_ocellaris
ENSCSEG00000014900	lsm7	86	100.000	ENSAPEG00000000694	lsm7	98	100.000	Amphiprion_percula
ENSCSEG00000014900	lsm7	87	99.029	ENSAPEG00000024447	lsm7	95	97.143	Amphiprion_percula
ENSCSEG00000014900	lsm7	86	100.000	ENSATEG00000008557	lsm7	98	100.000	Anabas_testudineus
ENSCSEG00000014900	lsm7	86	86.139	ENSANAG00000022222	-	98	86.139	Aotus_nancymaae
ENSCSEG00000014900	lsm7	86	95.050	ENSANAG00000037196	-	98	95.050	Aotus_nancymaae
ENSCSEG00000014900	lsm7	86	99.010	ENSACLG00000021021	lsm7	98	99.010	Astatotilapia_calliptera
ENSCSEG00000014900	lsm7	86	98.020	ENSAMXG00000037622	lsm7	98	98.020	Astyanax_mexicanus
ENSCSEG00000014900	lsm7	86	95.050	ENSBTAG00000004521	LSM7	98	95.050	Bos_taurus
ENSCSEG00000014900	lsm7	85	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSCSEG00000014900	lsm7	58	76.812	ENSCJAG00000039713	-	66	94.444	Callithrix_jacchus
ENSCSEG00000014900	lsm7	86	94.059	ENSCAFG00000019409	LSM7	99	93.137	Canis_familiaris
ENSCSEG00000014900	lsm7	89	91.429	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSCSEG00000014900	lsm7	86	95.050	ENSCHIG00000023663	LSM7	99	94.118	Capra_hircus
ENSCSEG00000014900	lsm7	60	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSCSEG00000014900	lsm7	86	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSCSEG00000014900	lsm7	86	95.098	ENSCCAG00000035456	LSM7	100	95.098	Cebus_capucinus
ENSCSEG00000014900	lsm7	86	95.050	ENSCATG00000023543	LSM7	98	95.050	Cercocebus_atys
ENSCSEG00000014900	lsm7	86	95.050	ENSCLAG00000011635	LSM7	98	95.050	Chinchilla_lanigera
ENSCSEG00000014900	lsm7	86	95.050	ENSCSAG00000011599	LSM7	98	95.050	Chlorocebus_sabaeus
ENSCSEG00000014900	lsm7	61	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSCSEG00000014900	lsm7	81	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSCSEG00000014900	lsm7	86	95.050	ENSCANG00000035525	LSM7	98	95.050	Colobus_angolensis_palliatus
ENSCSEG00000014900	lsm7	77	84.615	ENSCGRG00001016005	-	93	84.615	Cricetulus_griseus_chok1gshd
ENSCSEG00000014900	lsm7	86	94.059	ENSCGRG00001000807	-	98	94.059	Cricetulus_griseus_chok1gshd
ENSCSEG00000014900	lsm7	85	95.000	ENSCGRG00000014355	-	99	92.233	Cricetulus_griseus_crigri
ENSCSEG00000014900	lsm7	77	84.615	ENSCGRG00000006821	-	93	84.615	Cricetulus_griseus_crigri
ENSCSEG00000014900	lsm7	90	95.283	ENSCVAG00000021091	lsm7	100	94.444	Cyprinodon_variegatus
ENSCSEG00000014900	lsm7	86	97.030	ENSDARG00000058328	lsm7	98	97.030	Danio_rerio
ENSCSEG00000014900	lsm7	86	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSCSEG00000014900	lsm7	87	70.755	FBgn0261068	LSm7	94	70.874	Drosophila_melanogaster
ENSCSEG00000014900	lsm7	86	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSCSEG00000014900	lsm7	70	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSCSEG00000014900	lsm7	86	84.158	ENSEBUG00000016992	lsm7	97	84.158	Eptatretus_burgeri
ENSCSEG00000014900	lsm7	89	88.571	ENSECAG00000001440	LSM7	65	91.089	Equus_caballus
ENSCSEG00000014900	lsm7	86	94.059	ENSFCAG00000003445	LSM7	98	94.059	Felis_catus
ENSCSEG00000014900	lsm7	86	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSCSEG00000014900	lsm7	81	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSCSEG00000014900	lsm7	90	95.283	ENSFHEG00000006349	lsm7	95	95.283	Fundulus_heteroclitus
ENSCSEG00000014900	lsm7	86	98.020	ENSGMOG00000013320	lsm7	99	97.059	Gadus_morhua
ENSCSEG00000014900	lsm7	86	99.010	ENSGAFG00000013902	lsm7	98	99.010	Gambusia_affinis
ENSCSEG00000014900	lsm7	86	99.010	ENSGACG00000010390	lsm7	99	98.039	Gasterosteus_aculeatus
ENSCSEG00000014900	lsm7	86	95.050	ENSGGOG00000010172	LSM7	98	95.050	Gorilla_gorilla
ENSCSEG00000014900	lsm7	86	99.010	ENSHBUG00000004616	lsm7	98	99.010	Haplochromis_burtoni
ENSCSEG00000014900	lsm7	86	95.050	ENSHGLG00000010587	LSM7	98	95.050	Heterocephalus_glaber_female
ENSCSEG00000014900	lsm7	86	95.050	ENSHGLG00100000852	LSM7	98	95.050	Heterocephalus_glaber_male
ENSCSEG00000014900	lsm7	86	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSCSEG00000014900	lsm7	86	96.040	ENSIPUG00000024724	lsm7	98	96.040	Ictalurus_punctatus
ENSCSEG00000014900	lsm7	86	95.050	ENSSTOG00000028372	LSM7	100	94.118	Ictidomys_tridecemlineatus
ENSCSEG00000014900	lsm7	85	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSCSEG00000014900	lsm7	86	99.010	ENSKMAG00000022151	lsm7	98	99.010	Kryptolebias_marmoratus
ENSCSEG00000014900	lsm7	86	100.000	ENSLBEG00000005203	lsm7	99	99.020	Labrus_bergylta
ENSCSEG00000014900	lsm7	86	96.040	ENSLACG00000015700	LSM7	98	96.040	Latimeria_chalumnae
ENSCSEG00000014900	lsm7	86	97.030	ENSLOCG00000004356	lsm7	99	96.078	Lepisosteus_oculatus
ENSCSEG00000014900	lsm7	86	95.050	ENSLAFG00000029302	LSM7	99	94.118	Loxodonta_africana
ENSCSEG00000014900	lsm7	86	95.050	ENSMFAG00000044572	LSM7	98	95.050	Macaca_fascicularis
ENSCSEG00000014900	lsm7	86	95.050	ENSMMUG00000000452	LSM7	100	94.118	Macaca_mulatta
ENSCSEG00000014900	lsm7	86	95.050	ENSMNEG00000004393	LSM7	98	95.050	Macaca_nemestrina
ENSCSEG00000014900	lsm7	86	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSCSEG00000014900	lsm7	86	99.010	ENSMAMG00000005410	lsm7	98	99.010	Mastacembelus_armatus
ENSCSEG00000014900	lsm7	86	99.010	ENSMZEG00005028055	lsm7	98	99.010	Maylandia_zebra
ENSCSEG00000014900	lsm7	84	97.030	ENSMGAG00000000750	LSM7	92	93.458	Meleagris_gallopavo
ENSCSEG00000014900	lsm7	86	94.059	ENSMAUG00000009276	Lsm7	99	93.137	Mesocricetus_auratus
ENSCSEG00000014900	lsm7	86	95.050	ENSMICG00000028619	-	98	95.050	Microcebus_murinus
ENSCSEG00000014900	lsm7	86	95.050	ENSMICG00000009988	-	98	95.050	Microcebus_murinus
ENSCSEG00000014900	lsm7	86	94.059	ENSMOCG00000016925	Lsm7	98	94.059	Microtus_ochrogaster
ENSCSEG00000014900	lsm7	86	100.000	ENSMMOG00000019645	lsm7	96	100.000	Mola_mola
ENSCSEG00000014900	lsm7	86	96.040	ENSMODG00000004722	LSM7	98	96.040	Monodelphis_domestica
ENSCSEG00000014900	lsm7	90	95.283	ENSMALG00000014511	lsm7	82	95.283	Monopterus_albus
ENSCSEG00000014900	lsm7	85	94.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	94.000	Mus_caroli
ENSCSEG00000014900	lsm7	85	94.000	ENSMUSG00000035215	Lsm7	97	94.000	Mus_musculus
ENSCSEG00000014900	lsm7	85	94.000	MGP_PahariEiJ_G0031020	Lsm7	97	94.000	Mus_pahari
ENSCSEG00000014900	lsm7	85	94.000	MGP_SPRETEiJ_G0016425	Lsm7	97	94.000	Mus_spretus
ENSCSEG00000014900	lsm7	86	94.059	ENSMLUG00000013097	-	99	93.137	Myotis_lucifugus
ENSCSEG00000014900	lsm7	88	86.538	ENSMLUG00000024002	-	95	86.538	Myotis_lucifugus
ENSCSEG00000014900	lsm7	86	93.069	ENSNGAG00000021637	Lsm7	98	93.069	Nannospalax_galili
ENSCSEG00000014900	lsm7	96	90.265	ENSNBRG00000001237	-	90	90.265	Neolamprologus_brichardi
ENSCSEG00000014900	lsm7	93	91.964	ENSNBRG00000015770	lsm7	96	91.964	Neolamprologus_brichardi
ENSCSEG00000014900	lsm7	86	95.050	ENSNLEG00000002265	LSM7	98	95.050	Nomascus_leucogenys
ENSCSEG00000014900	lsm7	86	75.248	ENSODEG00000008190	-	98	75.248	Octodon_degus
ENSCSEG00000014900	lsm7	86	95.050	ENSODEG00000013590	-	98	95.050	Octodon_degus
ENSCSEG00000014900	lsm7	86	88.119	ENSODEG00000018769	-	98	88.119	Octodon_degus
ENSCSEG00000014900	lsm7	96	90.265	ENSONIG00000001801	lsm7	97	90.265	Oreochromis_niloticus
ENSCSEG00000014900	lsm7	86	100.000	ENSORLG00000023951	lsm7	98	100.000	Oryzias_latipes
ENSCSEG00000014900	lsm7	86	100.000	ENSORLG00020022226	lsm7	98	100.000	Oryzias_latipes_hni
ENSCSEG00000014900	lsm7	86	100.000	ENSORLG00015020044	lsm7	94	100.000	Oryzias_latipes_hsok
ENSCSEG00000014900	lsm7	86	100.000	ENSOMEG00000012806	lsm7	98	100.000	Oryzias_melastigma
ENSCSEG00000014900	lsm7	84	83.168	ENSOGAG00000024373	-	100	80.392	Otolemur_garnettii
ENSCSEG00000014900	lsm7	86	93.069	ENSOGAG00000000144	-	100	92.157	Otolemur_garnettii
ENSCSEG00000014900	lsm7	86	95.050	ENSOARG00000014013	LSM7	99	94.118	Ovis_aries
ENSCSEG00000014900	lsm7	86	95.050	ENSPPAG00000026500	LSM7	98	95.050	Pan_paniscus
ENSCSEG00000014900	lsm7	86	94.059	ENSPPRG00000008624	LSM7	98	94.059	Panthera_pardus
ENSCSEG00000014900	lsm7	84	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSCSEG00000014900	lsm7	86	95.050	ENSPTRG00000010233	LSM7	98	95.050	Pan_troglodytes
ENSCSEG00000014900	lsm7	86	95.050	ENSPANG00000020668	LSM7	98	95.050	Papio_anubis
ENSCSEG00000014900	lsm7	86	98.020	ENSPKIG00000011325	lsm7	98	98.020	Paramormyrops_kingsleyae
ENSCSEG00000014900	lsm7	84	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSCSEG00000014900	lsm7	86	100.000	ENSPMGG00000006498	lsm7	98	100.000	Periophthalmus_magnuspinnatus
ENSCSEG00000014900	lsm7	86	96.078	ENSPCIG00000030454	LSM7	100	96.078	Phascolarctos_cinereus
ENSCSEG00000014900	lsm7	86	98.020	ENSPFOG00000012467	lsm7	96	92.593	Poecilia_formosa
ENSCSEG00000014900	lsm7	90	94.340	ENSPLAG00000000252	lsm7	100	92.593	Poecilia_latipinna
ENSCSEG00000014900	lsm7	90	94.340	ENSPMEG00000000587	lsm7	100	92.593	Poecilia_mexicana
ENSCSEG00000014900	lsm7	70	73.810	ENSPREG00000016718	lsm7	63	77.215	Poecilia_reticulata
ENSCSEG00000014900	lsm7	88	71.698	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSCSEG00000014900	lsm7	86	95.098	ENSPCOG00000017177	LSM7	100	95.098	Propithecus_coquereli
ENSCSEG00000014900	lsm7	86	99.010	ENSPNYG00000006938	lsm7	98	99.010	Pundamilia_nyererei
ENSCSEG00000014900	lsm7	86	98.020	ENSPNAG00000010141	lsm7	100	97.059	Pygocentrus_nattereri
ENSCSEG00000014900	lsm7	85	95.000	ENSRNOG00000019552	Lsm7	97	95.000	Rattus_norvegicus
ENSCSEG00000014900	lsm7	86	95.050	ENSRBIG00000035978	LSM7	98	95.050	Rhinopithecus_bieti
ENSCSEG00000014900	lsm7	86	95.050	ENSRROG00000034044	LSM7	98	95.050	Rhinopithecus_roxellana
ENSCSEG00000014900	lsm7	74	47.826	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSCSEG00000014900	lsm7	86	95.050	ENSSBOG00000034899	LSM7	98	95.050	Saimiri_boliviensis_boliviensis
ENSCSEG00000014900	lsm7	86	96.040	ENSSFOG00015006728	lsm7	98	96.040	Scleropages_formosus
ENSCSEG00000014900	lsm7	93	95.455	ENSSMAG00000004195	lsm7	98	95.455	Scophthalmus_maximus
ENSCSEG00000014900	lsm7	86	100.000	ENSSDUG00000001863	lsm7	98	100.000	Seriola_dumerili
ENSCSEG00000014900	lsm7	86	100.000	ENSSLDG00000016339	lsm7	98	100.000	Seriola_lalandi_dorsalis
ENSCSEG00000014900	lsm7	97	89.167	ENSSPAG00000015221	lsm7	98	100.000	Stegastes_partitus
ENSCSEG00000014900	lsm7	86	95.098	ENSSSCG00000013463	LSM7	100	95.098	Sus_scrofa
ENSCSEG00000014900	lsm7	86	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSCSEG00000014900	lsm7	86	98.020	ENSTRUG00000022913	lsm7	98	98.020	Takifugu_rubripes
ENSCSEG00000014900	lsm7	86	98.020	ENSTNIG00000015525	lsm7	98	98.020	Tetraodon_nigroviridis
ENSCSEG00000014900	lsm7	59	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSCSEG00000014900	lsm7	86	94.059	ENSUAMG00000000912	LSM7	85	93.137	Ursus_americanus
ENSCSEG00000014900	lsm7	93	90.000	ENSUMAG00000006556	LSM7	85	90.826	Ursus_maritimus
ENSCSEG00000014900	lsm7	60	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSCSEG00000014900	lsm7	86	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSCSEG00000014900	lsm7	86	99.010	ENSXCOG00000002572	lsm7	100	98.039	Xiphophorus_couchianus
ENSCSEG00000014900	lsm7	86	99.010	ENSXMAG00000018630	lsm7	98	99.010	Xiphophorus_maculatus