EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSEG00000015071 (Gene tree)
Gene ID
103386519
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Cynoglossus_semilaevis
Status
putative
Strand
Plus strand
Length
5967 bases
Position
chr11:14588103-14594069
Accession
103386519
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSEP00000023627LSMPF01423.227.4e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSET00000023935-4751XM_008320830ENSCSEP00000023627133 (aa)XP_008319052UPI000495ACB0
Gene Model
Click here to download ENSCSEG00000015071's gene model file
Pathways
Pathway IDPathway NameSource
csem03018RNA degradationKEGG
csem03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000015071's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSEG00000015071lsm35932.927ENSCSEG00000002230snrpd26932.927
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSEG00000015071lsm37795.098ENSG00000170860LSM310095.098Homo_sapiens
ENSCSEG00000015071lsm377100.000ENSAPOG00000018947lsm3100100.000Acanthochromis_polyacanthus
ENSCSEG00000015071lsm37795.098ENSAMEG00000009405LSM310095.098Ailuropoda_melanoleuca
ENSCSEG00000015071lsm38393.750ENSACIG00000004574lsm37893.750Amphilophus_citrinellus
ENSCSEG00000015071lsm377100.000ENSAOCG00000007658lsm3100100.000Amphiprion_ocellaris
ENSCSEG00000015071lsm377100.000ENSAPEG00000018621lsm3100100.000Amphiprion_percula
ENSCSEG00000015071lsm377100.000ENSATEG00000005153lsm3100100.000Anabas_testudineus
ENSCSEG00000015071lsm37196.842ENSAPLG00000014499LSM310096.842Anas_platyrhynchos
ENSCSEG00000015071lsm37796.078ENSACAG00000013503LSM310096.078Anolis_carolinensis
ENSCSEG00000015071lsm37791.176ENSANAG00000002903-10091.176Aotus_nancymaae
ENSCSEG00000015071lsm37795.098ENSANAG00000034627LSM310095.098Aotus_nancymaae
ENSCSEG00000015071lsm373100.000ENSACLG00000001726-94100.000Astatotilapia_calliptera
ENSCSEG00000015071lsm37798.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSCSEG00000015071lsm37296.875ENSBTAG00000007363LSM310096.875Bos_taurus
ENSCSEG00000015071lsm37769.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSCSEG00000015071lsm37793.137ENSCAFG00000001760LSM310093.137Canis_familiaris
ENSCSEG00000015071lsm37786.275ENSCAFG00020016680-10086.275Canis_lupus_dingo
ENSCSEG00000015071lsm37793.137ENSCAFG00020021584-10093.137Canis_lupus_dingo
ENSCSEG00000015071lsm37792.157ENSCAFG00020026452-10092.157Canis_lupus_dingo
ENSCSEG00000015071lsm37793.137ENSCAFG00020017266-10093.137Canis_lupus_dingo
ENSCSEG00000015071lsm37785.047ENSCAFG00020020950-10085.047Canis_lupus_dingo
ENSCSEG00000015071lsm37795.098ENSCHIG00000024650LSM310095.098Capra_hircus
ENSCSEG00000015071lsm37796.078ENSTSYG00000005204-10096.078Carlito_syrichta
ENSCSEG00000015071lsm37677.228ENSTSYG00000028528-9977.228Carlito_syrichta
ENSCSEG00000015071lsm37296.875ENSCAPG00000015760LSM310096.875Cavia_aperea
ENSCSEG00000015071lsm37795.098ENSCPOG00000034071LSM310095.098Cavia_porcellus
ENSCSEG00000015071lsm37775.490ENSCCAG00000032763-10075.490Cebus_capucinus
ENSCSEG00000015071lsm37795.098ENSCCAG00000019503-10095.098Cebus_capucinus
ENSCSEG00000015071lsm37795.098ENSCCAG00000036499-10095.098Cebus_capucinus
ENSCSEG00000015071lsm37795.098ENSCATG00000039421LSM310095.098Cercocebus_atys
ENSCSEG00000015071lsm37675.248ENSCATG00000031630-9975.248Cercocebus_atys
ENSCSEG00000015071lsm37795.098ENSCLAG00000015997LSM310095.098Chinchilla_lanigera
ENSCSEG00000015071lsm37790.196ENSCSAG00000019525-10090.196Chlorocebus_sabaeus
ENSCSEG00000015071lsm37796.078ENSCPBG00000014531LSM310096.078Chrysemys_picta_bellii
ENSCSEG00000015071lsm37780.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSCSEG00000015071lsm37792.157ENSCANG00000038037-10092.157Colobus_angolensis_palliatus
ENSCSEG00000015071lsm37793.137ENSCANG00000018782-10093.137Colobus_angolensis_palliatus
ENSCSEG00000015071lsm37795.098ENSCANG00000033944-10095.098Colobus_angolensis_palliatus
ENSCSEG00000015071lsm37771.845ENSCGRG00001008639-10071.845Cricetulus_griseus_chok1gshd
ENSCSEG00000015071lsm37795.098ENSCGRG00001017598Lsm310095.098Cricetulus_griseus_chok1gshd
ENSCSEG00000015071lsm37580.000ENSCGRG00001011396-10080.000Cricetulus_griseus_chok1gshd
ENSCSEG00000015071lsm37795.098ENSCGRG00000016159Lsm310095.098Cricetulus_griseus_crigri
ENSCSEG00000015071lsm37182.105ENSCGRG00000012129-10082.105Cricetulus_griseus_crigri
ENSCSEG00000015071lsm37799.020ENSCVAG00000006933lsm310099.020Cyprinodon_variegatus
ENSCSEG00000015071lsm37796.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSCSEG00000015071lsm37795.098ENSDNOG00000030808LSM310095.098Dasypus_novemcinctus
ENSCSEG00000015071lsm37795.098ENSDORG00000006894-10095.098Dipodomys_ordii
ENSCSEG00000015071lsm37775.490ENSDORG00000024490-10075.490Dipodomys_ordii
ENSCSEG00000015071lsm37778.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSCSEG00000015071lsm37795.098ENSETEG00000016207LSM310095.098Echinops_telfairi
ENSCSEG00000015071lsm37788.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSCSEG00000015071lsm37795.098ENSEASG00005015443LSM310095.098Equus_asinus_asinus
ENSCSEG00000015071lsm37795.098ENSECAG00000007803LSM310095.098Equus_caballus
ENSCSEG00000015071lsm37798.039ENSELUG00000018922lsm310098.039Esox_lucius
ENSCSEG00000015071lsm37795.098ENSFCAG00000038453LSM310095.098Felis_catus
ENSCSEG00000015071lsm37772.549ENSFCAG00000044344-10072.549Felis_catus
ENSCSEG00000015071lsm37796.078ENSFALG00000012644LSM310096.078Ficedula_albicollis
ENSCSEG00000015071lsm37795.098ENSFDAG00000011470LSM310095.098Fukomys_damarensis
ENSCSEG00000015071lsm377100.000ENSFHEG00000000876lsm3100100.000Fundulus_heteroclitus
ENSCSEG00000015071lsm37197.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSCSEG00000015071lsm377100.000ENSGAFG00000013965lsm3100100.000Gambusia_affinis
ENSCSEG00000015071lsm377100.000ENSGACG00000003488lsm3100100.000Gasterosteus_aculeatus
ENSCSEG00000015071lsm37796.078ENSGAGG00000025707LSM310096.078Gopherus_agassizii
ENSCSEG00000015071lsm37795.098ENSGGOG00000010006LSM310095.098Gorilla_gorilla
ENSCSEG00000015071lsm377100.000ENSHBUG00000022399lsm3100100.000Haplochromis_burtoni
ENSCSEG00000015071lsm37795.098ENSHGLG00000000651LSM310095.098Heterocephalus_glaber_female
ENSCSEG00000015071lsm37775.490ENSHGLG00000015564-10075.490Heterocephalus_glaber_female
ENSCSEG00000015071lsm37775.490ENSHGLG00100010658-10075.490Heterocephalus_glaber_male
ENSCSEG00000015071lsm37795.098ENSHGLG00100011343LSM310095.098Heterocephalus_glaber_male
ENSCSEG00000015071lsm37799.020ENSHCOG00000013481lsm310099.020Hippocampus_comes
ENSCSEG00000015071lsm37798.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSCSEG00000015071lsm37795.098ENSSTOG00000006842LSM310095.098Ictidomys_tridecemlineatus
ENSCSEG00000015071lsm37787.255ENSJJAG00000012797-10087.255Jaculus_jaculus
ENSCSEG00000015071lsm37672.549ENSJJAG00000018311-10072.549Jaculus_jaculus
ENSCSEG00000015071lsm37795.098ENSJJAG00000017351Lsm310095.098Jaculus_jaculus
ENSCSEG00000015071lsm37799.020ENSKMAG00000015182lsm310099.020Kryptolebias_marmoratus
ENSCSEG00000015071lsm37497.959ENSLBEG00000021292lsm310097.959Labrus_bergylta
ENSCSEG00000015071lsm37796.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSCSEG00000015071lsm37794.175ENSLAFG00000023308LSM310094.175Loxodonta_africana
ENSCSEG00000015071lsm37795.098ENSMFAG00000003185LSM310095.098Macaca_fascicularis
ENSCSEG00000015071lsm37772.549ENSMMUG00000043596-10072.549Macaca_mulatta
ENSCSEG00000015071lsm37795.098ENSMMUG00000023126LSM310095.098Macaca_mulatta
ENSCSEG00000015071lsm37475.510ENSMMUG00000002294-9575.510Macaca_mulatta
ENSCSEG00000015071lsm37677.228ENSMNEG00000037686-9977.228Macaca_nemestrina
ENSCSEG00000015071lsm37795.098ENSMNEG00000043632LSM310095.098Macaca_nemestrina
ENSCSEG00000015071lsm37795.098ENSMLEG00000036162LSM310095.098Mandrillus_leucophaeus
ENSCSEG00000015071lsm377100.000ENSMAMG00000012807lsm3100100.000Mastacembelus_armatus
ENSCSEG00000015071lsm38397.273ENSMZEG00005016682lsm37897.273Maylandia_zebra
ENSCSEG00000015071lsm37296.875ENSMGAG00000007776LSM310096.875Meleagris_gallopavo
ENSCSEG00000015071lsm37781.373ENSMICG00000027821-10081.373Microcebus_murinus
ENSCSEG00000015071lsm37794.118ENSMICG00000032361-10094.118Microcebus_murinus
ENSCSEG00000015071lsm37795.098ENSMOCG00000014269Lsm310095.098Microtus_ochrogaster
ENSCSEG00000015071lsm37799.020ENSMMOG00000020715lsm310099.020Mola_mola
ENSCSEG00000015071lsm37794.118ENSMODG00000007275LSM310094.118Monodelphis_domestica
ENSCSEG00000015071lsm377100.000ENSMALG00000006485lsm3100100.000Monopterus_albus
ENSCSEG00000015071lsm37795.098ENSMUSG00000034192Lsm310095.098Mus_musculus
ENSCSEG00000015071lsm37795.098MGP_PahariEiJ_G0022402Lsm310095.098Mus_pahari
ENSCSEG00000015071lsm37795.098MGP_SPRETEiJ_G0029681Lsm310095.098Mus_spretus
ENSCSEG00000015071lsm36487.059ENSMPUG00000017256-10087.059Mustela_putorius_furo
ENSCSEG00000015071lsm37483.838ENSMPUG00000019120-9783.838Mustela_putorius_furo
ENSCSEG00000015071lsm37795.098ENSMLUG00000010677LSM310095.098Myotis_lucifugus
ENSCSEG00000015071lsm37790.196ENSMLUG00000024700-10090.196Myotis_lucifugus
ENSCSEG00000015071lsm37770.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSCSEG00000015071lsm37795.098ENSNGAG00000022450Lsm310095.098Nannospalax_galili
ENSCSEG00000015071lsm37677.228ENSNGAG00000010207-9977.228Nannospalax_galili
ENSCSEG00000015071lsm377100.000ENSNBRG00000014318lsm3100100.000Neolamprologus_brichardi
ENSCSEG00000015071lsm37795.098ENSNLEG00000005079LSM310095.098Nomascus_leucogenys
ENSCSEG00000015071lsm37786.275ENSNLEG00000030229-10086.275Nomascus_leucogenys
ENSCSEG00000015071lsm37793.137ENSODEG00000019158-10093.137Octodon_degus
ENSCSEG00000015071lsm37795.098ENSODEG00000001726LSM310095.098Octodon_degus
ENSCSEG00000015071lsm37794.118ENSODEG00000019740-10094.118Octodon_degus
ENSCSEG00000015071lsm37788.235ENSODEG00000019403-10088.235Octodon_degus
ENSCSEG00000015071lsm377100.000ENSONIG00000000370lsm3100100.000Oreochromis_niloticus
ENSCSEG00000015071lsm377100.000ENSONIG00000021369-100100.000Oreochromis_niloticus
ENSCSEG00000015071lsm37794.118ENSOANG00000012273LSM310094.118Ornithorhynchus_anatinus
ENSCSEG00000015071lsm37795.098ENSOCUG00000027653-10095.098Oryctolagus_cuniculus
ENSCSEG00000015071lsm37791.176ENSOCUG00000011088-10091.176Oryctolagus_cuniculus
ENSCSEG00000015071lsm37798.039ENSORLG00000025900lsm310098.039Oryzias_latipes
ENSCSEG00000015071lsm37798.039ENSORLG00020007125lsm310098.039Oryzias_latipes_hni
ENSCSEG00000015071lsm37798.039ENSORLG00015002944lsm310098.039Oryzias_latipes_hsok
ENSCSEG00000015071lsm37798.039ENSOMEG00000001915lsm310098.039Oryzias_melastigma
ENSCSEG00000015071lsm37394.845ENSOGAG00000028858-9994.845Otolemur_garnettii
ENSCSEG00000015071lsm37795.098ENSOGAG00000007659-10095.098Otolemur_garnettii
ENSCSEG00000015071lsm37786.275ENSOGAG00000033051-10086.275Otolemur_garnettii
ENSCSEG00000015071lsm37794.175ENSOARG00000000600LSM310094.175Ovis_aries
ENSCSEG00000015071lsm37795.098ENSPPAG00000034074LSM310095.098Pan_paniscus
ENSCSEG00000015071lsm37885.577ENSPPRG00000010610-9185.577Panthera_pardus
ENSCSEG00000015071lsm37795.098ENSPPRG00000012912-10095.098Panthera_pardus
ENSCSEG00000015071lsm37794.118ENSPPRG00000020953-10094.118Panthera_pardus
ENSCSEG00000015071lsm37795.098ENSPTIG00000013072-10095.098Panthera_tigris_altaica
ENSCSEG00000015071lsm37795.098ENSPTIG00000003463-10095.098Panthera_tigris_altaica
ENSCSEG00000015071lsm37795.098ENSPTRG00000014650LSM310095.098Pan_troglodytes
ENSCSEG00000015071lsm37795.098ENSPANG00000009378LSM310095.098Papio_anubis
ENSCSEG00000015071lsm37773.529ENSPANG00000032192-10073.529Papio_anubis
ENSCSEG00000015071lsm38490.179ENSPKIG00000008037lsm39690.179Paramormyrops_kingsleyae
ENSCSEG00000015071lsm37796.078ENSPSIG00000015720LSM310096.078Pelodiscus_sinensis
ENSCSEG00000015071lsm37395.876ENSPMGG00000012103lsm39895.876Periophthalmus_magnuspinnatus
ENSCSEG00000015071lsm37795.098ENSPEMG00000015797Lsm310095.098Peromyscus_maniculatus_bairdii
ENSCSEG00000015071lsm37779.412ENSPEMG00000020213-10079.412Peromyscus_maniculatus_bairdii
ENSCSEG00000015071lsm377100.000ENSPFOG00000008372lsm3100100.000Poecilia_formosa
ENSCSEG00000015071lsm377100.000ENSPLAG00000000563lsm3100100.000Poecilia_latipinna
ENSCSEG00000015071lsm377100.000ENSPMEG00000022052lsm3100100.000Poecilia_mexicana
ENSCSEG00000015071lsm377100.000ENSPREG00000022485lsm3100100.000Poecilia_reticulata
ENSCSEG00000015071lsm37795.098ENSPPYG00000013402LSM310095.098Pongo_abelii
ENSCSEG00000015071lsm37795.098ENSPCAG00000017077LSM310095.098Procavia_capensis
ENSCSEG00000015071lsm37794.118ENSPCOG00000016217-10094.118Propithecus_coquereli
ENSCSEG00000015071lsm37273.958ENSPCOG00000014435-9873.958Propithecus_coquereli
ENSCSEG00000015071lsm37795.098ENSPVAG00000016795LSM310095.098Pteropus_vampyrus
ENSCSEG00000015071lsm38397.273ENSPNYG00000009552lsm37897.273Pundamilia_nyererei
ENSCSEG00000015071lsm37798.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSCSEG00000015071lsm37795.098ENSRNOG00000008733Lsm310095.098Rattus_norvegicus
ENSCSEG00000015071lsm37795.098ENSRBIG00000034399LSM310095.098Rhinopithecus_bieti
ENSCSEG00000015071lsm37779.412ENSRBIG00000043783-10079.412Rhinopithecus_bieti
ENSCSEG00000015071lsm37784.314ENSRROG00000044047-10084.314Rhinopithecus_roxellana
ENSCSEG00000015071lsm37795.098ENSRROG00000033276-10095.098Rhinopithecus_roxellana
ENSCSEG00000015071lsm37780.392ENSRROG00000039868-10080.392Rhinopithecus_roxellana
ENSCSEG00000015071lsm37776.471ENSRROG00000044056-10076.471Rhinopithecus_roxellana
ENSCSEG00000015071lsm37795.098ENSSBOG00000024310LSM310095.098Saimiri_boliviensis_boliviensis
ENSCSEG00000015071lsm37798.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSCSEG00000015071lsm377100.000ENSSMAG00000001818lsm3100100.000Scophthalmus_maximus
ENSCSEG00000015071lsm377100.000ENSSDUG00000006040lsm3100100.000Seriola_dumerili
ENSCSEG00000015071lsm377100.000ENSSLDG00000006399lsm3100100.000Seriola_lalandi_dorsalis
ENSCSEG00000015071lsm37786.275ENSSPUG00000005394LSM310086.275Sphenodon_punctatus
ENSCSEG00000015071lsm37196.842ENSSPUG00000017047-9996.842Sphenodon_punctatus
ENSCSEG00000015071lsm37787.255ENSSPAG00000000934lsm310087.255Stegastes_partitus
ENSCSEG00000015071lsm37372.165ENSSSCG00000023718-9972.165Sus_scrofa
ENSCSEG00000015071lsm37795.098ENSSSCG00000011601LSM310095.098Sus_scrofa
ENSCSEG00000015071lsm37796.078ENSTGUG00000008327LSM310096.078Taeniopygia_guttata
ENSCSEG00000015071lsm37799.020ENSTRUG00000023175lsm310099.020Takifugu_rubripes
ENSCSEG00000015071lsm37799.020ENSTNIG00000005589lsm310099.020Tetraodon_nigroviridis
ENSCSEG00000015071lsm37785.294ENSTBEG00000001050-9985.294Tupaia_belangeri
ENSCSEG00000015071lsm37795.098ENSTTRG00000011197LSM310095.098Tursiops_truncatus
ENSCSEG00000015071lsm37795.098ENSUAMG00000017250-10095.098Ursus_americanus
ENSCSEG00000015071lsm37795.098ENSUMAG00000015905LSM310095.098Ursus_maritimus
ENSCSEG00000015071lsm37196.842ENSVPAG00000010709LSM310096.842Vicugna_pacos
ENSCSEG00000015071lsm37791.176ENSVVUG00000007332-9191.176Vulpes_vulpes
ENSCSEG00000015071lsm37786.275ENSVVUG00000024228-10086.275Vulpes_vulpes
ENSCSEG00000015071lsm37791.176ENSVVUG00000029294-10091.176Vulpes_vulpes
ENSCSEG00000015071lsm37789.216ENSVVUG00000005684-10089.216Vulpes_vulpes
ENSCSEG00000015071lsm37790.196ENSVVUG00000006481-10090.196Vulpes_vulpes
ENSCSEG00000015071lsm37795.098ENSXETG00000011534lsm310095.098Xenopus_tropicalis
ENSCSEG00000015071lsm377100.000ENSXCOG00000017432LSM3100100.000Xiphophorus_couchianus
ENSCSEG00000015071lsm377100.000ENSXMAG00000009151lsm3100100.000Xiphophorus_maculatus

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