EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000015089 (Gene tree)
Gene ID: 103394066
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 6940 bases
Position: chr2:3092349-3099288
Accession: 103394066
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000023683	RRM_1	PF00076.22	4.8e-62	1	4
ENSCSEP00000023683	RRM_1	PF00076.22	4.8e-62	2	4
ENSCSEP00000023683	RRM_1	PF00076.22	4.8e-62	3	4
ENSCSEP00000023683	RRM_1	PF00076.22	4.8e-62	4	4
ENSCSEP00000023707	RRM_1	PF00076.22	5.9e-62	1	4
ENSCSEP00000023707	RRM_1	PF00076.22	5.9e-62	2	4
ENSCSEP00000023707	RRM_1	PF00076.22	5.9e-62	3	4
ENSCSEP00000023707	RRM_1	PF00076.22	5.9e-62	4	4
ENSCSEP00000023668	RRM_1	PF00076.22	6.3e-62	1	4
ENSCSEP00000023668	RRM_1	PF00076.22	6.3e-62	2	4
ENSCSEP00000023668	RRM_1	PF00076.22	6.3e-62	3	4
ENSCSEP00000023668	RRM_1	PF00076.22	6.3e-62	4	4
ENSCSEP00000023695	RRM_1	PF00076.22	6.3e-62	1	4
ENSCSEP00000023695	RRM_1	PF00076.22	6.3e-62	2	4
ENSCSEP00000023695	RRM_1	PF00076.22	6.3e-62	3	4
ENSCSEP00000023695	RRM_1	PF00076.22	6.3e-62	4	4
ENSCSEP00000023659	RRM_1	PF00076.22	1.6e-58	1	4
ENSCSEP00000023659	RRM_1	PF00076.22	1.6e-58	2	4
ENSCSEP00000023659	RRM_1	PF00076.22	1.6e-58	3	4
ENSCSEP00000023659	RRM_1	PF00076.22	1.6e-58	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000023968	-	2016	-	ENSCSEP00000023659	671 (aa)	-	-
ENSCSET00000023992	-	1989	-	ENSCSEP00000023683	662 (aa)	-	-
ENSCSET00000024016	-	2064	-	ENSCSEP00000023707	687 (aa)	-	-
ENSCSET00000023977	-	2097	-	ENSCSEP00000023668	698 (aa)	-	UPI0007DCA03F
ENSCSET00000024004	-	2535	XM_008331204	ENSCSEP00000023695	698 (aa)	XP_008329426	UPI0007DCA03F

Gene Model

Click here to download ENSCSEG00000015089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000015089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000015089	ncl	70	38.742	ENSCSEG00000017388	-	72	42.746
ENSCSEG00000015089	ncl	51	30.519	ENSCSEG00000000130	pabpc4	57	30.519
ENSCSEG00000015089	ncl	55	30.058	ENSCSEG00000013324	pabpc1a	67	31.902
ENSCSEG00000015089	ncl	51	32.298	ENSCSEG00000015241	-	56	32.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000015089	ncl	63	41.055	ENSAPOG00000014534	-	67	41.432	Acanthochromis_polyacanthus
ENSCSEG00000015089	ncl	64	84.433	ENSAPOG00000023888	ncl	61	83.668	Acanthochromis_polyacanthus
ENSCSEG00000015089	ncl	76	76.316	ENSACIG00000013234	ncl	62	76.517	Amphilophus_citrinellus
ENSCSEG00000015089	ncl	57	85.488	ENSAOCG00000003133	ncl	55	84.814	Amphiprion_ocellaris
ENSCSEG00000015089	ncl	76	36.538	ENSAOCG00000014792	-	61	41.085	Amphiprion_ocellaris
ENSCSEG00000015089	ncl	57	85.488	ENSAPEG00000002769	ncl	55	84.814	Amphiprion_percula
ENSCSEG00000015089	ncl	76	36.731	ENSAPEG00000013612	-	60	41.344	Amphiprion_percula
ENSCSEG00000015089	ncl	70	82.062	ENSATEG00000013343	ncl	57	87.679	Anabas_testudineus
ENSCSEG00000015089	ncl	66	43.333	ENSATEG00000019862	-	82	42.577	Anabas_testudineus
ENSCSEG00000015089	ncl	57	57.743	ENSAPLG00000012897	-	63	58.530	Anas_platyrhynchos
ENSCSEG00000015089	ncl	57	61.680	ENSACAG00000001006	-	52	61.979	Anolis_carolinensis
ENSCSEG00000015089	ncl	60	70.659	ENSACLG00000026031	ncl	85	72.785	Astatotilapia_calliptera
ENSCSEG00000015089	ncl	56	69.967	ENSAMXG00000001647	ncl	84	69.967	Astyanax_mexicanus
ENSCSEG00000015089	ncl	58	41.131	ENSCHIG00000012665	-	56	41.176	Capra_hircus
ENSCSEG00000015089	ncl	57	60.779	ENSCPBG00000016444	-	56	60.677	Chrysemys_picta_bellii
ENSCSEG00000015089	ncl	54	81.117	ENSCVAG00000012600	ncl	58	80.802	Cyprinodon_variegatus
ENSCSEG00000015089	ncl	75	70.283	ENSDARG00000002710	ncl	83	73.016	Danio_rerio
ENSCSEG00000015089	ncl	52	46.467	ENSDNOG00000040257	-	63	44.083	Dasypus_novemcinctus
ENSCSEG00000015089	ncl	56	41.799	ENSDNOG00000031611	-	69	39.886	Dasypus_novemcinctus
ENSCSEG00000015089	ncl	82	47.253	ENSEBUG00000016173	ncl	62	46.437	Eptatretus_burgeri
ENSCSEG00000015089	ncl	88	61.786	ENSELUG00000006033	ncl	58	74.212	Esox_lucius
ENSCSEG00000015089	ncl	64	47.418	ENSELUG00000022826	-	84	48.547	Esox_lucius
ENSCSEG00000015089	ncl	57	76.781	ENSFHEG00000018000	ncl	75	75.072	Fundulus_heteroclitus
ENSCSEG00000015089	ncl	78	67.969	ENSGMOG00000001341	ncl	59	67.639	Gadus_morhua
ENSCSEG00000015089	ncl	57	58.901	ENSGALG00000032930	NCL	55	58.901	Gallus_gallus
ENSCSEG00000015089	ncl	74	78.892	ENSGAFG00000015375	ncl	65	76.989	Gambusia_affinis
ENSCSEG00000015089	ncl	87	69.565	ENSGACG00000008970	ncl	62	79.714	Gasterosteus_aculeatus
ENSCSEG00000015089	ncl	57	60.938	ENSGAGG00000013330	-	56	60.836	Gopherus_agassizii
ENSCSEG00000015089	ncl	57	75.532	ENSHBUG00000006869	ncl	67	78.723	Haplochromis_burtoni
ENSCSEG00000015089	ncl	60	82.576	ENSHCOG00000010234	ncl	54	81.714	Hippocampus_comes
ENSCSEG00000015089	ncl	56	70.405	ENSIPUG00000024556	ncl	83	70.405	Ictalurus_punctatus
ENSCSEG00000015089	ncl	64	81.235	ENSKMAG00000008111	ncl	67	82.677	Kryptolebias_marmoratus
ENSCSEG00000015089	ncl	64	84.086	ENSLBEG00000019073	ncl	63	85.117	Labrus_bergylta
ENSCSEG00000015089	ncl	55	41.645	ENSLBEG00000014278	-	85	39.466	Labrus_bergylta
ENSCSEG00000015089	ncl	58	42.025	ENSLBEG00000007915	-	69	39.889	Labrus_bergylta
ENSCSEG00000015089	ncl	66	50.646	ENSLACG00000022167	-	82	52.663	Latimeria_chalumnae
ENSCSEG00000015089	ncl	64	64.692	ENSLACG00000009328	ncl	73	65.957	Latimeria_chalumnae
ENSCSEG00000015089	ncl	55	67.956	ENSLOCG00000004828	ncl	51	67.368	Lepisosteus_oculatus
ENSCSEG00000015089	ncl	60	41.422	ENSMAMG00000003479	-	73	39.496	Mastacembelus_armatus
ENSCSEG00000015089	ncl	54	75.532	ENSMZEG00005017438	ncl	70	75.532	Maylandia_zebra
ENSCSEG00000015089	ncl	55	58.602	ENSMGAG00000008147	-	83	62.882	Meleagris_gallopavo
ENSCSEG00000015089	ncl	57	83.861	ENSMMOG00000008553	ncl	85	83.861	Mola_mola
ENSCSEG00000015089	ncl	56	58.586	ENSMODG00000002470	-	67	58.182	Monodelphis_domestica
ENSCSEG00000015089	ncl	100	63.411	ENSMALG00000014827	ncl	75	81.972	Monopterus_albus
ENSCSEG00000015089	ncl	62	68.438	ENSNBRG00000000146	-	86	76.027	Neolamprologus_brichardi
ENSCSEG00000015089	ncl	57	76.027	ENSNBRG00000001232	ncl	82	76.027	Neolamprologus_brichardi
ENSCSEG00000015089	ncl	56	59.682	ENSMEUG00000012335	-	57	57.790	Notamacropus_eugenii
ENSCSEG00000015089	ncl	54	75.532	ENSONIG00000012508	ncl	53	75.789	Oreochromis_niloticus
ENSCSEG00000015089	ncl	54	53.571	ENSONIG00000010631	-	96	55.000	Oreochromis_niloticus
ENSCSEG00000015089	ncl	87	54.608	ENSOANG00000008732	-	71	60.052	Ornithorhynchus_anatinus
ENSCSEG00000015089	ncl	55	81.492	ENSORLG00000007055	ncl	52	81.201	Oryzias_latipes
ENSCSEG00000015089	ncl	58	37.838	ENSORLG00000004645	-	83	39.481	Oryzias_latipes
ENSCSEG00000015089	ncl	68	35.421	ENSORLG00020003497	-	75	39.481	Oryzias_latipes_hni
ENSCSEG00000015089	ncl	56	80.965	ENSORLG00020017943	ncl	50	80.697	Oryzias_latipes_hni
ENSCSEG00000015089	ncl	60	37.745	ENSORLG00015006613	-	77	39.433	Oryzias_latipes_hsok
ENSCSEG00000015089	ncl	55	78.851	ENSORLG00015013815	ncl	88	80.625	Oryzias_latipes_hsok
ENSCSEG00000015089	ncl	59	37.255	ENSOMEG00000015864	-	85	36.066	Oryzias_melastigma
ENSCSEG00000015089	ncl	57	81.266	ENSOMEG00000020786	ncl	65	80.229	Oryzias_melastigma
ENSCSEG00000015089	ncl	64	74.588	ENSPKIG00000002604	ncl	55	76.724	Paramormyrops_kingsleyae
ENSCSEG00000015089	ncl	70	58.599	ENSPSIG00000002361	-	54	61.458	Pelodiscus_sinensis
ENSCSEG00000015089	ncl	68	74.307	ENSPMGG00000004709	ncl	98	73.804	Periophthalmus_magnuspinnatus
ENSCSEG00000015089	ncl	75	59.269	ENSPCIG00000003293	-	56	57.382	Phascolarctos_cinereus
ENSCSEG00000015089	ncl	70	75.267	ENSPFOG00000024205	ncl	64	78.701	Poecilia_formosa
ENSCSEG00000015089	ncl	69	74.675	ENSPLAG00000024026	ncl	64	77.836	Poecilia_latipinna
ENSCSEG00000015089	ncl	69	74.242	ENSPMEG00000006000	ncl	64	78.364	Poecilia_mexicana
ENSCSEG00000015089	ncl	57	75.532	ENSPNYG00000020494	ncl	55	73.988	Pundamilia_nyererei
ENSCSEG00000015089	ncl	62	70.188	ENSPNAG00000006192	ncl	52	72.559	Pygocentrus_nattereri
ENSCSEG00000015089	ncl	50	43.323	ENSSFOG00015013153	-	82	42.708	Scleropages_formosus
ENSCSEG00000015089	ncl	70	68.455	ENSSFOG00015008583	ncl	60	77.011	Scleropages_formosus
ENSCSEG00000015089	ncl	64	83.019	ENSSMAG00000021241	ncl	63	85.146	Scophthalmus_maximus
ENSCSEG00000015089	ncl	64	42.691	ENSSMAG00000007582	-	65	42.898	Scophthalmus_maximus
ENSCSEG00000015089	ncl	79	43.059	ENSSDUG00000010922	-	70	43.750	Seriola_dumerili
ENSCSEG00000015089	ncl	83	83.333	ENSSDUG00000006128	ncl	86	86.544	Seriola_dumerili
ENSCSEG00000015089	ncl	62	43.230	ENSSLDG00000015784	-	65	43.979	Seriola_lalandi_dorsalis
ENSCSEG00000015089	ncl	61	84.507	ENSSLDG00000002012	ncl	55	87.393	Seriola_lalandi_dorsalis
ENSCSEG00000015089	ncl	72	49.444	ENSSPUG00000008244	-	63	56.800	Sphenodon_punctatus
ENSCSEG00000015089	ncl	65	39.773	ENSSPAG00000001859	-	61	42.228	Stegastes_partitus
ENSCSEG00000015089	ncl	53	85.315	ENSSPAG00000002637	ncl	84	85.315	Stegastes_partitus
ENSCSEG00000015089	ncl	57	59.686	ENSTGUG00000009782	-	62	59.439	Taeniopygia_guttata
ENSCSEG00000015089	ncl	64	78.638	ENSTRUG00000008185	ncl	56	80.347	Takifugu_rubripes
ENSCSEG00000015089	ncl	55	80.886	ENSTNIG00000012186	ncl	62	79.894	Tetraodon_nigroviridis
ENSCSEG00000015089	ncl	79	50.820	ENSXETG00000009517	ncl	71	61.299	Xenopus_tropicalis
ENSCSEG00000015089	ncl	58	39.744	ENSXCOG00000007369	-	91	40.155	Xiphophorus_couchianus
ENSCSEG00000015089	ncl	71	49.631	ENSXCOG00000003524	ncl	88	88.148	Xiphophorus_couchianus
ENSCSEG00000015089	ncl	61	79.327	ENSXMAG00000005914	ncl	52	80.779	Xiphophorus_maculatus