EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000015227 (Gene tree)
Gene ID: 103398254
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 8254 bases
Position: chrZ:19441406-19449659
Accession: 103398254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000023877	TUDOR	PF00567.24	6.9e-05	1	1
ENSCSEP00000023887	TUDOR	PF00567.24	7e-05	1	1
ENSCSEP00000023887	SMN	PF06003.12	3e-94	1	1
ENSCSEP00000023877	SMN	PF06003.12	7.6e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000024207	-	1707	XM_008336804	ENSCSEP00000023887	285 (aa)	XP_008335026	UPI0004961102
ENSCSET00000024197	-	2566	XM_017030618	ENSCSEP00000023877	293 (aa)	XP_016886107	UPI0007DC9DB7

Gene Model

Click here to download ENSCSEG00000015227's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000015227's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000015227	smn1	97	48.789	ENSG00000172062	SMN1	94	48.399	Homo_sapiens
ENSCSEG00000015227	smn1	97	48.789	ENSG00000205571	SMN2	94	48.399	Homo_sapiens
ENSCSEG00000015227	smn1	100	67.133	ENSAPOG00000011324	smn1	98	66.783	Acanthochromis_polyacanthus
ENSCSEG00000015227	smn1	97	48.432	ENSAMEG00000003316	-	89	46.154	Ailuropoda_melanoleuca
ENSCSEG00000015227	smn1	63	64.246	ENSACIG00000007598	smn1	100	60.526	Amphilophus_citrinellus
ENSCSEG00000015227	smn1	95	61.905	ENSACIG00000019772	-	99	61.905	Amphilophus_citrinellus
ENSCSEG00000015227	smn1	100	66.783	ENSAOCG00000024444	smn1	98	66.434	Amphiprion_ocellaris
ENSCSEG00000015227	smn1	100	67.133	ENSAPEG00000016504	smn1	98	66.783	Amphiprion_percula
ENSCSEG00000015227	smn1	98	68.571	ENSATEG00000002182	smn1	82	68.214	Anabas_testudineus
ENSCSEG00000015227	smn1	71	46.009	ENSAPLG00000010912	-	95	44.976	Anas_platyrhynchos
ENSCSEG00000015227	smn1	97	50.704	ENSACAG00000010017	-	93	42.953	Anolis_carolinensis
ENSCSEG00000015227	smn1	85	42.683	ENSANAG00000032133	-	92	49.135	Aotus_nancymaae
ENSCSEG00000015227	smn1	98	64.158	ENSACLG00000007308	smn1	94	64.685	Astatotilapia_calliptera
ENSCSEG00000015227	smn1	61	55.367	ENSAMXG00000013884	smn1	97	55.749	Astyanax_mexicanus
ENSCSEG00000015227	smn1	97	50.714	ENSBTAG00000005743	SMN2	93	44.948	Bos_taurus
ENSCSEG00000015227	smn1	97	46.403	ENSCJAG00000016290	-	92	50.000	Callithrix_jacchus
ENSCSEG00000015227	smn1	97	50.709	ENSCAFG00000007812	SMN	93	45.455	Canis_familiaris
ENSCSEG00000015227	smn1	97	50.709	ENSCAFG00020019229	-	87	45.455	Canis_lupus_dingo
ENSCSEG00000015227	smn1	97	51.064	ENSCHIG00000015559	-	92	47.163	Capra_hircus
ENSCSEG00000015227	smn1	97	49.645	ENSTSYG00000012058	-	93	46.237	Carlito_syrichta
ENSCSEG00000015227	smn1	97	47.059	ENSCPOG00000036973	-	92	44.406	Cavia_porcellus
ENSCSEG00000015227	smn1	97	46.599	ENSCPOG00000012328	-	93	44.330	Cavia_porcellus
ENSCSEG00000015227	smn1	97	44.245	ENSCCAG00000018127	-	92	49.650	Cebus_capucinus
ENSCSEG00000015227	smn1	97	49.110	ENSCATG00000037002	-	94	48.043	Cercocebus_atys
ENSCSEG00000015227	smn1	97	47.552	ENSCLAG00000000284	-	92	45.017	Chinchilla_lanigera
ENSCSEG00000015227	smn1	97	50.534	ENSCSAG00000015688	-	92	48.780	Chlorocebus_sabaeus
ENSCSEG00000015227	smn1	50	60.274	ENSCHOG00000007346	-	100	44.118	Choloepus_hoffmanni
ENSCSEG00000015227	smn1	96	49.104	ENSCPBG00000010968	-	95	48.315	Chrysemys_picta_bellii
ENSCSEG00000015227	smn1	97	50.534	ENSCANG00000038242	-	82	64.286	Colobus_angolensis_palliatus
ENSCSEG00000015227	smn1	95	47.080	ENSCANG00000033324	-	89	47.163	Colobus_angolensis_palliatus
ENSCSEG00000015227	smn1	71	44.878	ENSCGRG00001016998	-	81	38.393	Cricetulus_griseus_chok1gshd
ENSCSEG00000015227	smn1	97	49.822	ENSCGRG00001017959	-	93	50.000	Cricetulus_griseus_chok1gshd
ENSCSEG00000015227	smn1	97	49.822	ENSCGRG00000007698	Smn1	93	50.000	Cricetulus_griseus_crigri
ENSCSEG00000015227	smn1	99	66.434	ENSCVAG00000007498	smn1	97	66.084	Cyprinodon_variegatus
ENSCSEG00000015227	smn1	99	53.472	ENSDARG00000018494	smn1	96	51.943	Danio_rerio
ENSCSEG00000015227	smn1	85	45.749	ENSDNOG00000007283	-	97	44.444	Dasypus_novemcinctus
ENSCSEG00000015227	smn1	53	50.658	ENSDNOG00000045949	-	88	43.602	Dasypus_novemcinctus
ENSCSEG00000015227	smn1	94	43.015	ENSDORG00000007082	Smn1	92	37.456	Dipodomys_ordii
ENSCSEG00000015227	smn1	58	47.059	ENSETEG00000001406	-	93	41.624	Echinops_telfairi
ENSCSEG00000015227	smn1	91	44.403	ENSEASG00005018000	-	89	42.435	Equus_asinus_asinus
ENSCSEG00000015227	smn1	97	47.018	ENSECAG00000015215	-	93	45.139	Equus_caballus
ENSCSEG00000015227	smn1	91	50.554	ENSEEUG00000015777	-	100	46.269	Erinaceus_europaeus
ENSCSEG00000015227	smn1	99	58.304	ENSELUG00000018067	smn1	96	56.491	Esox_lucius
ENSCSEG00000015227	smn1	97	50.877	ENSFCAG00000028292	SMN	79	62.857	Felis_catus
ENSCSEG00000015227	smn1	93	53.903	ENSFALG00000012320	-	90	49.071	Ficedula_albicollis
ENSCSEG00000015227	smn1	97	45.035	ENSFDAG00000017683	-	92	45.361	Fukomys_damarensis
ENSCSEG00000015227	smn1	97	64.982	ENSFHEG00000018508	smn1	97	66.187	Fundulus_heteroclitus
ENSCSEG00000015227	smn1	99	57.244	ENSGMOG00000017279	smn1	95	59.155	Gadus_morhua
ENSCSEG00000015227	smn1	96	51.971	ENSGALG00000002430	SMN	94	46.953	Gallus_gallus
ENSCSEG00000015227	smn1	99	65.965	ENSGAFG00000009501	smn1	97	65.614	Gambusia_affinis
ENSCSEG00000015227	smn1	100	63.509	ENSGACG00000010584	smn1	95	65.035	Gasterosteus_aculeatus
ENSCSEG00000015227	smn1	96	48.746	ENSGAGG00000011374	-	93	48.736	Gopherus_agassizii
ENSCSEG00000015227	smn1	54	59.236	ENSGGOG00000026704	-	91	48.611	Gorilla_gorilla
ENSCSEG00000015227	smn1	94	43.494	ENSGGOG00000003872	-	93	46.350	Gorilla_gorilla
ENSCSEG00000015227	smn1	100	65.263	ENSHBUG00000013987	smn1	97	67.133	Haplochromis_burtoni
ENSCSEG00000015227	smn1	97	47.312	ENSHGLG00000001905	-	94	46.831	Heterocephalus_glaber_female
ENSCSEG00000015227	smn1	97	48.070	ENSHGLG00000001018	-	92	47.782	Heterocephalus_glaber_female
ENSCSEG00000015227	smn1	95	47.445	ENSHGLG00100018676	-	96	46.953	Heterocephalus_glaber_male
ENSCSEG00000015227	smn1	97	48.070	ENSHGLG00100011252	-	92	47.782	Heterocephalus_glaber_male
ENSCSEG00000015227	smn1	96	65.818	ENSHCOG00000017136	smn1	89	65.455	Hippocampus_comes
ENSCSEG00000015227	smn1	99	55.789	ENSIPUG00000012580	smn1	86	54.417	Ictalurus_punctatus
ENSCSEG00000015227	smn1	94	49.815	ENSSTOG00000012288	-	94	46.403	Ictidomys_tridecemlineatus
ENSCSEG00000015227	smn1	99	65.724	ENSKMAG00000007239	smn1	96	65.314	Kryptolebias_marmoratus
ENSCSEG00000015227	smn1	100	62.587	ENSLBEG00000022550	smn1	98	64.808	Labrus_bergylta
ENSCSEG00000015227	smn1	98	32.886	ENSLACG00000009808	-	91	35.274	Latimeria_chalumnae
ENSCSEG00000015227	smn1	98	31.142	ENSLOCG00000000801	-	87	30.464	Lepisosteus_oculatus
ENSCSEG00000015227	smn1	99	51.568	ENSLOCG00000011339	smn1	97	51.916	Lepisosteus_oculatus
ENSCSEG00000015227	smn1	96	48.601	ENSLAFG00000003425	-	89	47.569	Loxodonta_africana
ENSCSEG00000015227	smn1	97	50.534	ENSMFAG00000031523	SMN1	82	64.286	Macaca_fascicularis
ENSCSEG00000015227	smn1	96	47.842	ENSMFAG00000008812	-	91	43.902	Macaca_fascicularis
ENSCSEG00000015227	smn1	97	50.534	ENSMMUG00000020214	SMN1	82	64.286	Macaca_mulatta
ENSCSEG00000015227	smn1	96	47.122	ENSMMUG00000030594	-	92	42.759	Macaca_mulatta
ENSCSEG00000015227	smn1	64	42.246	ENSMNEG00000036423	-	70	36.735	Macaca_nemestrina
ENSCSEG00000015227	smn1	97	50.534	ENSMNEG00000035094	-	82	64.286	Macaca_nemestrina
ENSCSEG00000015227	smn1	97	50.534	ENSMLEG00000041902	-	84	62.500	Mandrillus_leucophaeus
ENSCSEG00000015227	smn1	100	67.944	ENSMAMG00000011034	smn1	98	67.596	Mastacembelus_armatus
ENSCSEG00000015227	smn1	100	65.263	ENSMZEG00005013634	smn1	97	67.133	Maylandia_zebra
ENSCSEG00000015227	smn1	72	45.098	ENSMGAG00000008889	-	94	44.390	Meleagris_gallopavo
ENSCSEG00000015227	smn1	58	53.892	ENSMAUG00000010262	Smn1	92	47.163	Mesocricetus_auratus
ENSCSEG00000015227	smn1	84	47.012	ENSMICG00000034708	-	93	44.151	Microcebus_murinus
ENSCSEG00000015227	smn1	97	50.890	ENSMOCG00000017833	Smn1	93	48.239	Microtus_ochrogaster
ENSCSEG00000015227	smn1	99	61.837	ENSMMOG00000005504	smn1	98	60.417	Mola_mola
ENSCSEG00000015227	smn1	96	49.474	ENSMODG00000001436	-	91	49.638	Monodelphis_domestica
ENSCSEG00000015227	smn1	99	69.474	ENSMALG00000008025	smn1	96	69.014	Monopterus_albus
ENSCSEG00000015227	smn1	97	51.064	MGP_CAROLIEiJ_G0018836	Smn1	93	51.943	Mus_caroli
ENSCSEG00000015227	smn1	97	50.709	ENSMUSG00000021645	Smn1	93	51.590	Mus_musculus
ENSCSEG00000015227	smn1	97	52.313	MGP_PahariEiJ_G0015911	Smn1	93	52.313	Mus_pahari
ENSCSEG00000015227	smn1	97	49.291	MGP_SPRETEiJ_G0019718	Smn1	93	51.211	Mus_spretus
ENSCSEG00000015227	smn1	95	48.227	ENSMPUG00000014470	-	94	46.643	Mustela_putorius_furo
ENSCSEG00000015227	smn1	97	51.379	ENSMLUG00000010603	-	89	50.000	Myotis_lucifugus
ENSCSEG00000015227	smn1	97	49.470	ENSNGAG00000019833	Smn1	93	48.070	Nannospalax_galili
ENSCSEG00000015227	smn1	100	66.316	ENSNBRG00000023000	smn1	98	67.832	Neolamprologus_brichardi
ENSCSEG00000015227	smn1	98	48.464	ENSNLEG00000004454	-	94	48.754	Nomascus_leucogenys
ENSCSEG00000015227	smn1	82	43.210	ENSMEUG00000011393	-	100	42.259	Notamacropus_eugenii
ENSCSEG00000015227	smn1	91	46.863	ENSOPRG00000002015	-	100	46.324	Ochotona_princeps
ENSCSEG00000015227	smn1	54	59.494	ENSODEG00000015976	-	92	48.201	Octodon_degus
ENSCSEG00000015227	smn1	100	66.316	ENSONIG00000011799	smn1	98	67.832	Oreochromis_niloticus
ENSCSEG00000015227	smn1	95	50.714	ENSOANG00000001626	-	93	48.188	Ornithorhynchus_anatinus
ENSCSEG00000015227	smn1	97	48.252	ENSOCUG00000026649	-	92	47.872	Oryctolagus_cuniculus
ENSCSEG00000015227	smn1	85	46.122	ENSOCUG00000025183	-	78	44.105	Oryctolagus_cuniculus
ENSCSEG00000015227	smn1	97	49.822	ENSOCUG00000017097	-	92	48.736	Oryctolagus_cuniculus
ENSCSEG00000015227	smn1	99	63.121	ENSORLG00000010552	smn1	97	64.437	Oryzias_latipes
ENSCSEG00000015227	smn1	99	60.424	ENSORLG00020007936	smn1	96	60.071	Oryzias_latipes_hni
ENSCSEG00000015227	smn1	99	62.411	ENSORLG00015022425	smn1	96	64.664	Oryzias_latipes_hsok
ENSCSEG00000015227	smn1	99	63.830	ENSOMEG00000007824	smn1	97	64.789	Oryzias_melastigma
ENSCSEG00000015227	smn1	94	45.455	ENSOGAG00000031414	-	92	40.070	Otolemur_garnettii
ENSCSEG00000015227	smn1	96	51.264	ENSOARG00000005425	-	97	47.703	Ovis_aries
ENSCSEG00000015227	smn1	97	48.789	ENSPPAG00000036640	-	94	48.399	Pan_paniscus
ENSCSEG00000015227	smn1	97	50.877	ENSPPRG00000005575	-	79	62.857	Panthera_pardus
ENSCSEG00000015227	smn1	97	48.754	ENSPTIG00000007745	-	79	62.857	Panthera_tigris_altaica
ENSCSEG00000015227	smn1	97	49.822	ENSPTRG00000016955	-	94	49.821	Pan_troglodytes
ENSCSEG00000015227	smn1	97	47.887	ENSPANG00000000253	-	92	46.392	Papio_anubis
ENSCSEG00000015227	smn1	97	50.534	ENSPANG00000013601	-	82	64.286	Papio_anubis
ENSCSEG00000015227	smn1	99	52.069	ENSPKIG00000011096	smn1	96	50.526	Paramormyrops_kingsleyae
ENSCSEG00000015227	smn1	93	49.446	ENSPSIG00000014787	-	83	49.071	Pelodiscus_sinensis
ENSCSEG00000015227	smn1	99	62.807	ENSPMGG00000012285	smn1	99	63.509	Periophthalmus_magnuspinnatus
ENSCSEG00000015227	smn1	94	39.583	ENSPMAG00000005004	smn1	92	36.129	Petromyzon_marinus
ENSCSEG00000015227	smn1	96	49.643	ENSPCIG00000025764	-	93	49.275	Phascolarctos_cinereus
ENSCSEG00000015227	smn1	99	64.912	ENSPFOG00000007786	smn1	97	64.561	Poecilia_formosa
ENSCSEG00000015227	smn1	99	65.263	ENSPLAG00000012071	smn1	97	64.912	Poecilia_latipinna
ENSCSEG00000015227	smn1	99	64.912	ENSPMEG00000017085	smn1	97	64.561	Poecilia_mexicana
ENSCSEG00000015227	smn1	99	64.912	ENSPREG00000005824	smn1	97	64.561	Poecilia_reticulata
ENSCSEG00000015227	smn1	90	33.852	ENSPPYG00000019189	-	99	36.047	Pongo_abelii
ENSCSEG00000015227	smn1	94	48.746	ENSPPYG00000015533	-	94	46.071	Pongo_abelii
ENSCSEG00000015227	smn1	93	48.175	ENSPCAG00000004187	-	97	46.715	Procavia_capensis
ENSCSEG00000015227	smn1	62	53.039	ENSPCOG00000022307	-	84	51.053	Propithecus_coquereli
ENSCSEG00000015227	smn1	97	51.418	ENSPVAG00000005977	-	92	46.875	Pteropus_vampyrus
ENSCSEG00000015227	smn1	100	66.316	ENSPNYG00000014148	smn1	98	67.832	Pundamilia_nyererei
ENSCSEG00000015227	smn1	99	56.338	ENSPNAG00000014007	smn1	85	54.577	Pygocentrus_nattereri
ENSCSEG00000015227	smn1	97	49.110	ENSRNOG00000018067	Smn1	93	49.477	Rattus_norvegicus
ENSCSEG00000015227	smn1	98	49.825	ENSRBIG00000037052	-	82	64.286	Rhinopithecus_bieti
ENSCSEG00000015227	smn1	95	45.985	ENSRBIG00000036775	-	89	44.118	Rhinopithecus_bieti
ENSCSEG00000015227	smn1	97	44.803	ENSRROG00000031088	-	91	44.928	Rhinopithecus_roxellana
ENSCSEG00000015227	smn1	98	49.825	ENSRROG00000039399	-	82	64.286	Rhinopithecus_roxellana
ENSCSEG00000015227	smn1	97	46.763	ENSSBOG00000011665	-	92	50.350	Saimiri_boliviensis_boliviensis
ENSCSEG00000015227	smn1	55	55.280	ENSSBOG00000020112	-	87	47.710	Saimiri_boliviensis_boliviensis
ENSCSEG00000015227	smn1	96	49.643	ENSSHAG00000001499	-	97	48.364	Sarcophilus_harrisii
ENSCSEG00000015227	smn1	99	54.895	ENSSFOG00015015507	smn1	97	52.297	Scleropages_formosus
ENSCSEG00000015227	smn1	100	64.211	ENSSMAG00000007922	smn1	98	65.734	Scophthalmus_maximus
ENSCSEG00000015227	smn1	100	71.080	ENSSDUG00000018533	smn1	98	70.732	Seriola_dumerili
ENSCSEG00000015227	smn1	100	71.429	ENSSLDG00000021135	smn1	98	71.080	Seriola_lalandi_dorsalis
ENSCSEG00000015227	smn1	95	49.141	ENSSPUG00000000373	-	93	46.875	Sphenodon_punctatus
ENSCSEG00000015227	smn1	100	68.881	ENSSPAG00000004345	smn1	98	68.531	Stegastes_partitus
ENSCSEG00000015227	smn1	56	58.537	ENSSSCG00000029127	-	89	37.729	Sus_scrofa
ENSCSEG00000015227	smn1	97	50.883	ENSSSCG00000016970	-	92	48.239	Sus_scrofa
ENSCSEG00000015227	smn1	94	47.857	ENSTGUG00000001548	-	95	46.739	Taeniopygia_guttata
ENSCSEG00000015227	smn1	100	59.649	ENSTRUG00000000736	smn	97	60.490	Takifugu_rubripes
ENSCSEG00000015227	smn1	100	56.849	ENSTNIG00000009892	smn1	98	59.727	Tetraodon_nigroviridis
ENSCSEG00000015227	smn1	54	57.862	ENSTBEG00000002399	-	92	49.741	Tupaia_belangeri
ENSCSEG00000015227	smn1	54	58.861	ENSTTRG00000005080	-	91	45.804	Tursiops_truncatus
ENSCSEG00000015227	smn1	54	58.861	ENSUAMG00000024947	-	70	50.259	Ursus_americanus
ENSCSEG00000015227	smn1	54	58.861	ENSUMAG00000007842	-	69	46.154	Ursus_maritimus
ENSCSEG00000015227	smn1	94	44.444	ENSVPAG00000009887	-	94	41.379	Vicugna_pacos
ENSCSEG00000015227	smn1	97	50.709	ENSVVUG00000006934	-	93	45.455	Vulpes_vulpes
ENSCSEG00000015227	smn1	99	49.827	ENSXETG00000018189	smn2	93	49.129	Xenopus_tropicalis
ENSCSEG00000015227	smn1	99	64.561	ENSXMAG00000001521	smn1	97	64.211	Xiphophorus_maculatus