EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000015258 (Gene tree)
Gene ID: 103394266
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 5387 bases
Position: chr18:9262689-9268075
Accession: 103394266
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000023933	RRM_1	PF00076.22	5.2e-39	1	2
ENSCSEP00000023933	RRM_1	PF00076.22	5.2e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000024253	-	3563	XM_008331495	ENSCSEP00000023933	479 (aa)	XP_008329717	-

Gene Model

Click here to download ENSCSEG00000015258's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000015258's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000015258	sf3b4	64	61.438	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSCSEG00000015258	sf3b4	56	93.680	ENSCVAG00000005536	sf3b4	76	86.379	Cyprinodon_variegatus
ENSCSEG00000015258	sf3b4	82	66.253	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSCSEG00000015258	sf3b4	56	95.167	ENSGAFG00000010181	sf3b4	76	90.365	Gambusia_affinis
ENSCSEG00000015258	sf3b4	75	64.171	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSCSEG00000015258	sf3b4	74	63.712	ENSMFAG00000039067	-	53	79.899	Macaca_fascicularis
ENSCSEG00000015258	sf3b4	74	63.158	ENSMNEG00000031526	-	53	79.500	Macaca_nemestrina
ENSCSEG00000015258	sf3b4	75	57.412	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSCSEG00000015258	sf3b4	55	72.862	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSCSEG00000015258	sf3b4	66	94.654	ENSORLG00000003062	sf3b4	77	94.314	Oryzias_latipes
ENSCSEG00000015258	sf3b4	66	94.654	ENSORLG00020000687	sf3b4	75	94.314	Oryzias_latipes_hni
ENSCSEG00000015258	sf3b4	66	94.654	ENSORLG00015010989	sf3b4	75	94.314	Oryzias_latipes_hsok
ENSCSEG00000015258	sf3b4	56	96.654	ENSOMEG00000013694	sf3b4	75	93.289	Oryzias_melastigma
ENSCSEG00000015258	sf3b4	63	71.854	ENSOARG00000007368	-	55	82.063	Ovis_aries
ENSCSEG00000015258	sf3b4	65	76.176	ENSPPAG00000030024	-	55	88.106	Pan_paniscus
ENSCSEG00000015258	sf3b4	65	77.419	ENSPTRG00000049727	-	57	88.546	Pan_troglodytes
ENSCSEG00000015258	sf3b4	57	95.203	ENSPFOG00000005754	sf3b4	76	90.365	Poecilia_formosa
ENSCSEG00000015258	sf3b4	57	95.203	ENSPLAG00000001401	sf3b4	82	90.365	Poecilia_latipinna
ENSCSEG00000015258	sf3b4	57	95.203	ENSPREG00000011076	sf3b4	66	93.680	Poecilia_reticulata
ENSCSEG00000015258	sf3b4	77	59.948	ENSRROG00000028213	-	51	75.000	Rhinopithecus_roxellana
ENSCSEG00000015258	sf3b4	71	93.605	ENSSMAG00000006837	sf3b4	75	92.715	Scophthalmus_maximus
ENSCSEG00000015258	sf3b4	56	97.026	ENSSDUG00000012064	sf3b4	100	89.512	Seriola_dumerili
ENSCSEG00000015258	sf3b4	56	97.026	ENSSLDG00000014226	sf3b4	100	89.512	Seriola_lalandi_dorsalis
ENSCSEG00000015258	sf3b4	65	78.638	ENSSSCG00000006665	-	54	98.678	Sus_scrofa
ENSCSEG00000015258	sf3b4	66	89.937	ENSTRUG00000004516	sf3b4	74	90.268	Takifugu_rubripes
ENSCSEG00000015258	sf3b4	64	77.705	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSCSEG00000015258	sf3b4	57	95.572	ENSXCOG00000019895	sf3b4	76	91.030	Xiphophorus_couchianus
ENSCSEG00000015258	sf3b4	56	95.539	ENSXMAG00000003772	sf3b4	76	90.698	Xiphophorus_maculatus