EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000015621 (Gene tree)
Gene ID: 103387644
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 1845 bases
Position: chr12:14901668-14903512
Accession: 103387644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000024461	TUDOR	PF00567.24	6.4e-06	1	1
ENSCSEP00000024470	TUDOR	PF00567.24	7.3e-06	1	1
ENSCSEP00000024461	SMN	PF06003.12	3.6e-17	1	1
ENSCSEP00000024470	SMN	PF06003.12	5.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000024791	-	660	-	ENSCSEP00000024461	219 (aa)	-	-
ENSCSET00000024801	-	708	XM_008322384	ENSCSEP00000024470	235 (aa)	XP_008320606	UPI0004971643

Gene Model

Click here to download ENSCSEG00000015621's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000015621's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000015621	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSCSEG00000015621	smndc1	100	86.975	ENSAPOG00000021772	smndc1	100	86.975	Acanthochromis_polyacanthus
ENSCSEG00000015621	smndc1	100	75.630	ENSAMEG00000005251	SMNDC1	100	75.630	Ailuropoda_melanoleuca
ENSCSEG00000015621	smndc1	100	83.613	ENSACIG00000004819	smndc1	100	83.613	Amphilophus_citrinellus
ENSCSEG00000015621	smndc1	100	87.815	ENSAOCG00000017869	smndc1	100	87.815	Amphiprion_ocellaris
ENSCSEG00000015621	smndc1	100	87.815	ENSAPEG00000007752	smndc1	100	87.815	Amphiprion_percula
ENSCSEG00000015621	smndc1	100	86.134	ENSATEG00000006830	smndc1	100	86.134	Anabas_testudineus
ENSCSEG00000015621	smndc1	83	76.768	ENSAPLG00000004322	SMNDC1	100	76.768	Anas_platyrhynchos
ENSCSEG00000015621	smndc1	100	75.210	ENSACAG00000005983	SMNDC1	100	75.210	Anolis_carolinensis
ENSCSEG00000015621	smndc1	100	75.630	ENSANAG00000032875	SMNDC1	100	75.630	Aotus_nancymaae
ENSCSEG00000015621	smndc1	100	81.933	ENSACLG00000016360	smndc1	100	81.933	Astatotilapia_calliptera
ENSCSEG00000015621	smndc1	100	79.747	ENSAMXG00000020310	smndc1	100	79.747	Astyanax_mexicanus
ENSCSEG00000015621	smndc1	100	75.630	ENSBTAG00000000551	SMNDC1	100	75.630	Bos_taurus
ENSCSEG00000015621	smndc1	100	75.630	ENSCJAG00000018624	SMNDC1	100	75.630	Callithrix_jacchus
ENSCSEG00000015621	smndc1	100	75.630	ENSCAFG00000010720	SMNDC1	100	75.630	Canis_familiaris
ENSCSEG00000015621	smndc1	100	75.630	ENSCAFG00020011913	SMNDC1	100	75.630	Canis_lupus_dingo
ENSCSEG00000015621	smndc1	100	75.630	ENSCHIG00000010604	SMNDC1	100	75.630	Capra_hircus
ENSCSEG00000015621	smndc1	100	75.630	ENSTSYG00000026454	SMNDC1	100	75.630	Carlito_syrichta
ENSCSEG00000015621	smndc1	99	65.315	ENSCAPG00000009132	SMNDC1	100	72.139	Cavia_aperea
ENSCSEG00000015621	smndc1	100	75.630	ENSCPOG00000031666	SMNDC1	100	75.630	Cavia_porcellus
ENSCSEG00000015621	smndc1	100	75.630	ENSCCAG00000021793	SMNDC1	100	75.630	Cebus_capucinus
ENSCSEG00000015621	smndc1	100	75.210	ENSCATG00000035910	SMNDC1	100	75.210	Cercocebus_atys
ENSCSEG00000015621	smndc1	100	75.630	ENSCLAG00000002838	SMNDC1	100	75.630	Chinchilla_lanigera
ENSCSEG00000015621	smndc1	100	75.630	ENSCSAG00000005169	SMNDC1	100	75.630	Chlorocebus_sabaeus
ENSCSEG00000015621	smndc1	87	70.984	ENSCHOG00000002936	SMNDC1	100	70.984	Choloepus_hoffmanni
ENSCSEG00000015621	smndc1	100	75.630	ENSCPBG00000012837	SMNDC1	100	75.630	Chrysemys_picta_bellii
ENSCSEG00000015621	smndc1	100	68.908	ENSCANG00000034620	-	100	68.908	Colobus_angolensis_palliatus
ENSCSEG00000015621	smndc1	100	59.574	ENSCANG00000036994	-	100	59.574	Colobus_angolensis_palliatus
ENSCSEG00000015621	smndc1	100	75.630	ENSCANG00000031720	-	100	75.630	Colobus_angolensis_palliatus
ENSCSEG00000015621	smndc1	100	75.210	ENSCGRG00001012973	Smndc1	100	75.210	Cricetulus_griseus_chok1gshd
ENSCSEG00000015621	smndc1	100	75.210	ENSCGRG00000012396	Smndc1	100	75.210	Cricetulus_griseus_crigri
ENSCSEG00000015621	smndc1	100	86.134	ENSCVAG00000020432	smndc1	100	86.134	Cyprinodon_variegatus
ENSCSEG00000015621	smndc1	100	80.169	ENSDARG00000056235	smndc1	100	80.169	Danio_rerio
ENSCSEG00000015621	smndc1	100	75.630	ENSDNOG00000016387	SMNDC1	83	75.630	Dasypus_novemcinctus
ENSCSEG00000015621	smndc1	100	75.630	ENSDORG00000023715	Smndc1	100	75.630	Dipodomys_ordii
ENSCSEG00000015621	smndc1	97	43.200	FBgn0039977	CG17454	98	44.800	Drosophila_melanogaster
ENSCSEG00000015621	smndc1	100	67.635	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSCSEG00000015621	smndc1	100	75.630	ENSEASG00005014930	SMNDC1	100	75.630	Equus_asinus_asinus
ENSCSEG00000015621	smndc1	100	75.630	ENSECAG00000029973	SMNDC1	100	75.630	Equus_caballus
ENSCSEG00000015621	smndc1	61	86.458	ENSEEUG00000013407	-	72	86.458	Erinaceus_europaeus
ENSCSEG00000015621	smndc1	100	83.051	ENSELUG00000000227	smndc1	100	83.051	Esox_lucius
ENSCSEG00000015621	smndc1	100	75.630	ENSFCAG00000027353	SMNDC1	100	75.630	Felis_catus
ENSCSEG00000015621	smndc1	100	76.050	ENSFALG00000002306	SMNDC1	100	76.050	Ficedula_albicollis
ENSCSEG00000015621	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSCSEG00000015621	smndc1	100	86.975	ENSFHEG00000020150	smndc1	100	86.975	Fundulus_heteroclitus
ENSCSEG00000015621	smndc1	100	83.475	ENSGMOG00000016585	smndc1	100	83.475	Gadus_morhua
ENSCSEG00000015621	smndc1	100	76.050	ENSGALG00000008561	SMNDC1	100	76.050	Gallus_gallus
ENSCSEG00000015621	smndc1	100	85.294	ENSGAFG00000011582	smndc1	100	85.294	Gambusia_affinis
ENSCSEG00000015621	smndc1	100	85.294	ENSGACG00000009468	smndc1	100	85.294	Gasterosteus_aculeatus
ENSCSEG00000015621	smndc1	100	75.630	ENSGAGG00000024547	SMNDC1	100	75.630	Gopherus_agassizii
ENSCSEG00000015621	smndc1	100	75.630	ENSGGOG00000010071	SMNDC1	100	75.630	Gorilla_gorilla
ENSCSEG00000015621	smndc1	100	81.933	ENSHBUG00000017596	smndc1	100	81.933	Haplochromis_burtoni
ENSCSEG00000015621	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSCSEG00000015621	smndc1	100	56.198	ENSHGLG00000001157	-	100	55.785	Heterocephalus_glaber_female
ENSCSEG00000015621	smndc1	100	61.728	ENSHGLG00100004278	-	100	59.514	Heterocephalus_glaber_male
ENSCSEG00000015621	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSCSEG00000015621	smndc1	100	79.079	ENSHCOG00000000783	smndc1	100	79.079	Hippocampus_comes
ENSCSEG00000015621	smndc1	100	82.278	ENSIPUG00000004217	smndc1	100	82.278	Ictalurus_punctatus
ENSCSEG00000015621	smndc1	100	75.630	ENSSTOG00000006088	SMNDC1	100	75.630	Ictidomys_tridecemlineatus
ENSCSEG00000015621	smndc1	100	75.630	ENSJJAG00000019974	Smndc1	100	75.630	Jaculus_jaculus
ENSCSEG00000015621	smndc1	100	84.454	ENSKMAG00000020134	smndc1	100	84.454	Kryptolebias_marmoratus
ENSCSEG00000015621	smndc1	100	84.810	ENSLBEG00000004598	smndc1	100	84.810	Labrus_bergylta
ENSCSEG00000015621	smndc1	100	76.050	ENSLACG00000007784	SMNDC1	100	76.050	Latimeria_chalumnae
ENSCSEG00000015621	smndc1	100	81.013	ENSLOCG00000012355	smndc1	100	81.013	Lepisosteus_oculatus
ENSCSEG00000015621	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSCSEG00000015621	smndc1	100	64.681	ENSMFAG00000038381	-	100	64.681	Macaca_fascicularis
ENSCSEG00000015621	smndc1	100	75.630	ENSMFAG00000002433	-	100	75.630	Macaca_fascicularis
ENSCSEG00000015621	smndc1	100	64.681	ENSMMUG00000045875	-	100	64.681	Macaca_mulatta
ENSCSEG00000015621	smndc1	100	75.630	ENSMMUG00000007775	SMNDC1	100	75.630	Macaca_mulatta
ENSCSEG00000015621	smndc1	100	66.387	ENSMNEG00000033853	-	100	66.387	Macaca_nemestrina
ENSCSEG00000015621	smndc1	100	75.630	ENSMNEG00000042963	-	100	75.630	Macaca_nemestrina
ENSCSEG00000015621	smndc1	100	70.886	ENSMLEG00000040236	SMNDC1	100	70.464	Mandrillus_leucophaeus
ENSCSEG00000015621	smndc1	95	82.547	ENSMAMG00000018233	smndc1	87	82.547	Mastacembelus_armatus
ENSCSEG00000015621	smndc1	100	81.933	ENSMZEG00005027510	smndc1	100	81.933	Maylandia_zebra
ENSCSEG00000015621	smndc1	99	68.201	ENSMGAG00000010777	SMNDC1	100	68.201	Meleagris_gallopavo
ENSCSEG00000015621	smndc1	99	61.111	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSCSEG00000015621	smndc1	100	75.630	ENSMAUG00000012243	-	100	75.630	Mesocricetus_auratus
ENSCSEG00000015621	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSCSEG00000015621	smndc1	100	66.245	ENSMICG00000031640	-	100	66.245	Microcebus_murinus
ENSCSEG00000015621	smndc1	100	75.210	ENSMOCG00000002458	Smndc1	100	75.210	Microtus_ochrogaster
ENSCSEG00000015621	smndc1	100	83.613	ENSMMOG00000008856	smndc1	100	83.613	Mola_mola
ENSCSEG00000015621	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSCSEG00000015621	smndc1	100	84.454	ENSMALG00000017598	smndc1	100	84.454	Monopterus_albus
ENSCSEG00000015621	smndc1	100	76.050	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.050	Mus_caroli
ENSCSEG00000015621	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSCSEG00000015621	smndc1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSCSEG00000015621	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSCSEG00000015621	smndc1	100	75.630	ENSMPUG00000002089	SMNDC1	100	75.630	Mustela_putorius_furo
ENSCSEG00000015621	smndc1	100	75.630	ENSMLUG00000016007	SMNDC1	100	75.630	Myotis_lucifugus
ENSCSEG00000015621	smndc1	100	75.210	ENSNGAG00000006833	Smndc1	100	75.210	Nannospalax_galili
ENSCSEG00000015621	smndc1	100	82.353	ENSNBRG00000017089	smndc1	100	82.353	Neolamprologus_brichardi
ENSCSEG00000015621	smndc1	100	75.630	ENSNLEG00000015471	SMNDC1	100	75.630	Nomascus_leucogenys
ENSCSEG00000015621	smndc1	70	60.366	ENSMEUG00000010120	-	99	56.345	Notamacropus_eugenii
ENSCSEG00000015621	smndc1	100	75.630	ENSOPRG00000015348	SMNDC1	100	75.630	Ochotona_princeps
ENSCSEG00000015621	smndc1	100	54.468	ENSODEG00000007594	-	100	52.340	Octodon_degus
ENSCSEG00000015621	smndc1	100	82.353	ENSONIG00000000434	smndc1	100	82.353	Oreochromis_niloticus
ENSCSEG00000015621	smndc1	100	76.050	ENSOANG00000001598	SMNDC1	100	76.050	Ornithorhynchus_anatinus
ENSCSEG00000015621	smndc1	100	75.210	ENSOCUG00000008145	-	100	75.210	Oryctolagus_cuniculus
ENSCSEG00000015621	smndc1	100	54.852	ENSOCUG00000012274	-	100	57.384	Oryctolagus_cuniculus
ENSCSEG00000015621	smndc1	100	82.353	ENSORLG00000005934	smndc1	95	82.353	Oryzias_latipes
ENSCSEG00000015621	smndc1	100	82.353	ENSORLG00020008796	smndc1	95	82.353	Oryzias_latipes_hni
ENSCSEG00000015621	smndc1	100	81.933	ENSORLG00015013666	smndc1	100	81.933	Oryzias_latipes_hsok
ENSCSEG00000015621	smndc1	100	80.591	ENSOMEG00000007590	smndc1	100	80.591	Oryzias_melastigma
ENSCSEG00000015621	smndc1	100	75.630	ENSOGAG00000000571	SMNDC1	100	75.630	Otolemur_garnettii
ENSCSEG00000015621	smndc1	100	75.630	ENSOARG00000009500	SMNDC1	100	75.630	Ovis_aries
ENSCSEG00000015621	smndc1	100	75.630	ENSPPAG00000027815	SMNDC1	100	75.630	Pan_paniscus
ENSCSEG00000015621	smndc1	100	75.630	ENSPPRG00000013749	SMNDC1	100	75.630	Panthera_pardus
ENSCSEG00000015621	smndc1	100	75.630	ENSPTIG00000011451	SMNDC1	100	75.630	Panthera_tigris_altaica
ENSCSEG00000015621	smndc1	100	75.630	ENSPTRG00000002937	SMNDC1	100	75.630	Pan_troglodytes
ENSCSEG00000015621	smndc1	100	71.915	ENSPANG00000031346	-	100	71.915	Papio_anubis
ENSCSEG00000015621	smndc1	100	75.630	ENSPANG00000020805	-	100	75.630	Papio_anubis
ENSCSEG00000015621	smndc1	100	78.903	ENSPKIG00000017164	smndc1	100	78.903	Paramormyrops_kingsleyae
ENSCSEG00000015621	smndc1	100	76.050	ENSPSIG00000012257	SMNDC1	100	76.050	Pelodiscus_sinensis
ENSCSEG00000015621	smndc1	100	81.780	ENSPMGG00000015651	smndc1	100	81.780	Periophthalmus_magnuspinnatus
ENSCSEG00000015621	smndc1	100	75.630	ENSPEMG00000022058	Smndc1	100	75.630	Peromyscus_maniculatus_bairdii
ENSCSEG00000015621	smndc1	100	63.071	ENSPMAG00000007705	smndc1	100	63.071	Petromyzon_marinus
ENSCSEG00000015621	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSCSEG00000015621	smndc1	95	57.778	ENSPCIG00000009693	-	98	57.778	Phascolarctos_cinereus
ENSCSEG00000015621	smndc1	100	86.134	ENSPFOG00000017113	smndc1	100	86.134	Poecilia_formosa
ENSCSEG00000015621	smndc1	100	85.294	ENSPLAG00000010372	smndc1	100	85.294	Poecilia_latipinna
ENSCSEG00000015621	smndc1	100	86.555	ENSPMEG00000012288	smndc1	100	86.555	Poecilia_mexicana
ENSCSEG00000015621	smndc1	100	85.294	ENSPREG00000012279	smndc1	100	85.294	Poecilia_reticulata
ENSCSEG00000015621	smndc1	100	75.630	ENSPPYG00000002643	SMNDC1	100	75.630	Pongo_abelii
ENSCSEG00000015621	smndc1	87	70.984	ENSPCAG00000016183	SMNDC1	100	70.984	Procavia_capensis
ENSCSEG00000015621	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSCSEG00000015621	smndc1	78	89.583	ENSPVAG00000004368	SMNDC1	77	89.583	Pteropus_vampyrus
ENSCSEG00000015621	smndc1	83	81.818	ENSPNYG00000024093	smndc1	86	81.818	Pundamilia_nyererei
ENSCSEG00000015621	smndc1	100	79.747	ENSPNAG00000025285	smndc1	100	79.747	Pygocentrus_nattereri
ENSCSEG00000015621	smndc1	100	76.050	ENSRNOG00000014833	Smndc1	100	76.050	Rattus_norvegicus
ENSCSEG00000015621	smndc1	100	75.210	ENSRBIG00000000224	-	100	75.210	Rhinopithecus_bieti
ENSCSEG00000015621	smndc1	100	62.128	ENSRBIG00000032452	-	100	62.128	Rhinopithecus_bieti
ENSCSEG00000015621	smndc1	100	75.630	ENSRROG00000044992	-	100	75.630	Rhinopithecus_roxellana
ENSCSEG00000015621	smndc1	100	62.553	ENSRROG00000039125	-	100	62.553	Rhinopithecus_roxellana
ENSCSEG00000015621	smndc1	100	75.630	ENSSBOG00000026789	SMNDC1	100	75.630	Saimiri_boliviensis_boliviensis
ENSCSEG00000015621	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSCSEG00000015621	smndc1	100	78.481	ENSSFOG00015008311	smndc1	100	78.481	Scleropages_formosus
ENSCSEG00000015621	smndc1	100	86.975	ENSSMAG00000020118	smndc1	100	86.975	Scophthalmus_maximus
ENSCSEG00000015621	smndc1	100	86.975	ENSSDUG00000015330	smndc1	100	86.975	Seriola_dumerili
ENSCSEG00000015621	smndc1	100	86.975	ENSSLDG00000017325	smndc1	100	86.975	Seriola_lalandi_dorsalis
ENSCSEG00000015621	smndc1	100	75.630	ENSSARG00000006063	SMNDC1	100	75.630	Sorex_araneus
ENSCSEG00000015621	smndc1	100	75.630	ENSSPUG00000004574	SMNDC1	100	75.630	Sphenodon_punctatus
ENSCSEG00000015621	smndc1	100	85.714	ENSSPAG00000000338	smndc1	100	85.714	Stegastes_partitus
ENSCSEG00000015621	smndc1	100	75.630	ENSSSCG00000030507	SMNDC1	100	75.630	Sus_scrofa
ENSCSEG00000015621	smndc1	100	76.050	ENSTGUG00000010599	SMNDC1	100	76.050	Taeniopygia_guttata
ENSCSEG00000015621	smndc1	100	84.034	ENSTRUG00000023281	smndc1	100	84.034	Takifugu_rubripes
ENSCSEG00000015621	smndc1	100	83.613	ENSTNIG00000013331	smndc1	100	83.613	Tetraodon_nigroviridis
ENSCSEG00000015621	smndc1	100	75.630	ENSTBEG00000014337	SMNDC1	100	75.630	Tupaia_belangeri
ENSCSEG00000015621	smndc1	100	75.630	ENSUAMG00000008142	SMNDC1	100	75.630	Ursus_americanus
ENSCSEG00000015621	smndc1	100	75.630	ENSUMAG00000023722	SMNDC1	100	75.630	Ursus_maritimus
ENSCSEG00000015621	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSCSEG00000015621	smndc1	100	75.630	ENSVVUG00000007820	SMNDC1	100	75.630	Vulpes_vulpes
ENSCSEG00000015621	smndc1	59	65.116	ENSXETG00000015415	SMNDC1	91	65.116	Xenopus_tropicalis
ENSCSEG00000015621	smndc1	100	86.441	ENSXCOG00000009159	smndc1	100	86.441	Xiphophorus_couchianus
ENSCSEG00000015621	smndc1	100	85.294	ENSXMAG00000012755	smndc1	100	85.294	Xiphophorus_maculatus