EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016127 (Gene tree)
Gene ID: 103394678
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 2450 bases
Position: chr2:4547867-4550316
Accession: 103394678
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000025253	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000025590	-	919	XM_008332096	ENSCSEP00000025253	142 (aa)	XP_008330318	UPI00049569CE

Gene Model

Click here to download ENSCSEG00000016127's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03018	RNA degradation	KEGG
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016127's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016127	lsm4	69	33.663	ENSCSEG00000002911	si:ch73-14h10.2	100	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016127	lsm4	62	97.727	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSCSEG00000016127	lsm4	100	90.066	ENSAPOG00000005643	lsm4	100	83.444	Acanthochromis_polyacanthus
ENSCSEG00000016127	lsm4	61	97.701	ENSAMEG00000011162	LSM4	66	95.833	Ailuropoda_melanoleuca
ENSCSEG00000016127	lsm4	100	91.892	ENSAOCG00000006414	lsm4	100	83.108	Amphiprion_ocellaris
ENSCSEG00000016127	lsm4	100	91.275	ENSAPEG00000006238	lsm4	100	83.221	Amphiprion_percula
ENSCSEG00000016127	lsm4	100	88.158	ENSATEG00000016559	lsm4	100	80.263	Anabas_testudineus
ENSCSEG00000016127	lsm4	62	97.727	ENSANAG00000034659	LSM4	70	95.876	Aotus_nancymaae
ENSCSEG00000016127	lsm4	100	91.156	ENSACLG00000022738	lsm4	100	88.435	Astatotilapia_calliptera
ENSCSEG00000016127	lsm4	100	92.308	ENSAMXG00000016932	lsm4	100	85.211	Astyanax_mexicanus
ENSCSEG00000016127	lsm4	62	97.727	ENSBTAG00000008578	LSM4	70	95.876	Bos_taurus
ENSCSEG00000016127	lsm4	58	75.904	WBGene00003078	lsm-4	85	64.762	Caenorhabditis_elegans
ENSCSEG00000016127	lsm4	62	97.727	ENSCJAG00000014171	LSM4	70	95.876	Callithrix_jacchus
ENSCSEG00000016127	lsm4	62	97.727	ENSCAFG00000014900	LSM4	63	95.876	Canis_familiaris
ENSCSEG00000016127	lsm4	62	97.727	ENSCAFG00020012137	LSM4	70	95.876	Canis_lupus_dingo
ENSCSEG00000016127	lsm4	61	97.701	ENSCHIG00000010928	LSM4	64	95.833	Capra_hircus
ENSCSEG00000016127	lsm4	62	96.591	ENSTSYG00000030906	LSM4	70	94.845	Carlito_syrichta
ENSCSEG00000016127	lsm4	62	96.591	ENSCAPG00000014140	LSM4	70	94.845	Cavia_aperea
ENSCSEG00000016127	lsm4	62	96.591	ENSCPOG00000024117	LSM4	70	94.845	Cavia_porcellus
ENSCSEG00000016127	lsm4	62	97.727	ENSCCAG00000036308	LSM4	70	95.876	Cebus_capucinus
ENSCSEG00000016127	lsm4	83	81.356	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSCSEG00000016127	lsm4	96	77.372	ENSCLAG00000010828	LSM4	70	95.876	Chinchilla_lanigera
ENSCSEG00000016127	lsm4	62	97.727	ENSCSAG00000005370	LSM4	70	95.876	Chlorocebus_sabaeus
ENSCSEG00000016127	lsm4	94	85.926	ENSCPBG00000012925	LSM4	70	96.907	Chrysemys_picta_bellii
ENSCSEG00000016127	lsm4	61	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSCSEG00000016127	lsm4	61	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSCSEG00000016127	lsm4	62	97.727	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSCSEG00000016127	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	70	93.814	Cricetulus_griseus_chok1gshd
ENSCSEG00000016127	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	69	93.750	Cricetulus_griseus_crigri
ENSCSEG00000016127	lsm4	89	94.531	ENSCVAG00000021828	lsm4	98	82.812	Cyprinodon_variegatus
ENSCSEG00000016127	lsm4	100	95.105	ENSCVAG00000010601	lsm4	100	84.615	Cyprinodon_variegatus
ENSCSEG00000016127	lsm4	96	86.713	ENSDARG00000023852	lsm4	68	97.938	Danio_rerio
ENSCSEG00000016127	lsm4	96	77.372	ENSDORG00000024225	Lsm4	70	95.876	Dipodomys_ordii
ENSCSEG00000016127	lsm4	68	81.443	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSCSEG00000016127	lsm4	86	74.590	ENSETEG00000007762	-	66	93.902	Echinops_telfairi
ENSCSEG00000016127	lsm4	53	93.333	ENSEBUG00000003639	-	66	76.768	Eptatretus_burgeri
ENSCSEG00000016127	lsm4	93	93.182	ENSELUG00000012821	lsm4	73	97.917	Esox_lucius
ENSCSEG00000016127	lsm4	62	97.727	ENSFCAG00000040580	LSM4	70	95.876	Felis_catus
ENSCSEG00000016127	lsm4	94	85.821	ENSFALG00000009478	LSM4	70	96.875	Ficedula_albicollis
ENSCSEG00000016127	lsm4	61	97.701	ENSFDAG00000010124	LSM4	70	95.833	Fukomys_damarensis
ENSCSEG00000016127	lsm4	99	81.633	ENSGMOG00000007729	lsm4	99	81.633	Gadus_morhua
ENSCSEG00000016127	lsm4	94	85.926	ENSGALG00000003385	LSM4	70	96.907	Gallus_gallus
ENSCSEG00000016127	lsm4	100	94.406	ENSGAFG00000004903	lsm4	97	80.469	Gambusia_affinis
ENSCSEG00000016127	lsm4	100	83.333	ENSGACG00000008140	lsm4	100	78.000	Gasterosteus_aculeatus
ENSCSEG00000016127	lsm4	94	85.926	ENSGAGG00000017812	LSM4	70	96.907	Gopherus_agassizii
ENSCSEG00000016127	lsm4	62	97.727	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSCSEG00000016127	lsm4	100	91.781	ENSHBUG00000008858	lsm4	80	84.932	Haplochromis_burtoni
ENSCSEG00000016127	lsm4	96	76.642	ENSHGLG00000006568	LSM4	70	95.876	Heterocephalus_glaber_female
ENSCSEG00000016127	lsm4	65	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSCSEG00000016127	lsm4	100	95.070	ENSHCOG00000008819	lsm4	100	95.070	Hippocampus_comes
ENSCSEG00000016127	lsm4	100	91.608	ENSIPUG00000005368	Lsm4	100	83.803	Ictalurus_punctatus
ENSCSEG00000016127	lsm4	62	97.727	ENSSTOG00000016494	LSM4	70	95.876	Ictidomys_tridecemlineatus
ENSCSEG00000016127	lsm4	62	95.455	ENSJJAG00000017420	Lsm4	70	93.814	Jaculus_jaculus
ENSCSEG00000016127	lsm4	100	93.056	ENSKMAG00000005073	lsm4	100	86.111	Kryptolebias_marmoratus
ENSCSEG00000016127	lsm4	100	91.275	ENSLBEG00000027930	lsm4	100	88.591	Labrus_bergylta
ENSCSEG00000016127	lsm4	96	83.942	ENSLACG00000015861	LSM4	99	83.453	Latimeria_chalumnae
ENSCSEG00000016127	lsm4	89	92.188	ENSLOCG00000002025	lsm4	100	83.099	Lepisosteus_oculatus
ENSCSEG00000016127	lsm4	96	77.206	ENSLAFG00000017459	LSM4	69	94.792	Loxodonta_africana
ENSCSEG00000016127	lsm4	62	97.727	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSCSEG00000016127	lsm4	62	97.727	ENSMMUG00000004405	LSM4	70	95.876	Macaca_mulatta
ENSCSEG00000016127	lsm4	80	80.531	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSCSEG00000016127	lsm4	83	81.356	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSCSEG00000016127	lsm4	100	95.070	ENSMAMG00000006190	lsm4	100	95.070	Mastacembelus_armatus
ENSCSEG00000016127	lsm4	100	91.781	ENSMZEG00005016420	lsm4	100	89.726	Maylandia_zebra
ENSCSEG00000016127	lsm4	94	79.259	ENSMGAG00000004976	LSM4	69	96.875	Meleagris_gallopavo
ENSCSEG00000016127	lsm4	96	76.642	ENSMICG00000000222	LSM4	70	94.845	Microcebus_murinus
ENSCSEG00000016127	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	70	93.814	Microtus_ochrogaster
ENSCSEG00000016127	lsm4	86	76.230	ENSMODG00000015044	-	66	96.341	Monodelphis_domestica
ENSCSEG00000016127	lsm4	100	93.706	ENSMALG00000018159	lsm4	100	86.713	Monopterus_albus
ENSCSEG00000016127	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	70	93.814	Mus_caroli
ENSCSEG00000016127	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	94	87.629	Mus_musculus
ENSCSEG00000016127	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	70	93.814	Mus_pahari
ENSCSEG00000016127	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	70	93.814	Mus_spretus
ENSCSEG00000016127	lsm4	62	97.727	ENSMPUG00000015589	LSM4	70	95.876	Mustela_putorius_furo
ENSCSEG00000016127	lsm4	61	97.701	ENSMLUG00000004010	LSM4	69	95.833	Myotis_lucifugus
ENSCSEG00000016127	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	70	93.814	Nannospalax_galili
ENSCSEG00000016127	lsm4	76	97.222	ENSNBRG00000022150	lsm4	67	97.222	Neolamprologus_brichardi
ENSCSEG00000016127	lsm4	51	94.521	ENSMEUG00000013229	LSM4	66	91.463	Notamacropus_eugenii
ENSCSEG00000016127	lsm4	54	98.701	ENSOPRG00000005575	LSM4	69	96.341	Ochotona_princeps
ENSCSEG00000016127	lsm4	96	61.871	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSCSEG00000016127	lsm4	62	87.500	ENSODEG00000004519	-	70	85.567	Octodon_degus
ENSCSEG00000016127	lsm4	96	77.372	ENSODEG00000020549	-	70	95.876	Octodon_degus
ENSCSEG00000016127	lsm4	100	91.156	ENSONIG00000012724	lsm4	100	88.435	Oreochromis_niloticus
ENSCSEG00000016127	lsm4	61	93.407	ENSOANG00000007434	LSM4	86	92.000	Ornithorhynchus_anatinus
ENSCSEG00000016127	lsm4	100	92.361	ENSORLG00000008391	lsm4	100	90.278	Oryzias_latipes
ENSCSEG00000016127	lsm4	100	93.056	ENSORLG00020014829	lsm4	100	90.972	Oryzias_latipes_hni
ENSCSEG00000016127	lsm4	100	92.361	ENSORLG00015010205	lsm4	100	90.278	Oryzias_latipes_hsok
ENSCSEG00000016127	lsm4	100	92.361	ENSOMEG00000003606	lsm4	100	92.361	Oryzias_melastigma
ENSCSEG00000016127	lsm4	69	94.898	ENSOGAG00000027992	LSM4	66	94.792	Otolemur_garnettii
ENSCSEG00000016127	lsm4	85	76.033	ENSOARG00000012553	LSM4	95	76.033	Ovis_aries
ENSCSEG00000016127	lsm4	62	97.727	ENSPPAG00000044045	-	70	95.876	Pan_paniscus
ENSCSEG00000016127	lsm4	62	97.727	ENSPPRG00000018264	LSM4	70	95.876	Panthera_pardus
ENSCSEG00000016127	lsm4	61	97.701	ENSPTIG00000006306	LSM4	70	95.833	Panthera_tigris_altaica
ENSCSEG00000016127	lsm4	84	81.513	ENSPTRG00000031470	LSM4	70	95.876	Pan_troglodytes
ENSCSEG00000016127	lsm4	83	81.356	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSCSEG00000016127	lsm4	100	90.909	ENSPKIG00000006154	lsm4	100	83.099	Paramormyrops_kingsleyae
ENSCSEG00000016127	lsm4	94	85.075	ENSPSIG00000012358	LSM4	70	96.875	Pelodiscus_sinensis
ENSCSEG00000016127	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	70	93.814	Peromyscus_maniculatus_bairdii
ENSCSEG00000016127	lsm4	100	93.007	ENSPFOG00000000570	lsm4	76	82.517	Poecilia_formosa
ENSCSEG00000016127	lsm4	100	93.007	ENSPLAG00000016267	lsm4	100	83.217	Poecilia_latipinna
ENSCSEG00000016127	lsm4	100	93.007	ENSPMEG00000016378	lsm4	100	82.517	Poecilia_mexicana
ENSCSEG00000016127	lsm4	100	93.706	ENSPREG00000011290	lsm4	76	83.217	Poecilia_reticulata
ENSCSEG00000016127	lsm4	62	97.727	ENSPPYG00000009736	LSM4	70	95.876	Pongo_abelii
ENSCSEG00000016127	lsm4	86	74.590	ENSPCAG00000008513	LSM4	66	93.902	Procavia_capensis
ENSCSEG00000016127	lsm4	96	76.642	ENSPCOG00000019837	LSM4	70	94.845	Propithecus_coquereli
ENSCSEG00000016127	lsm4	62	97.727	ENSPVAG00000015383	LSM4	70	95.876	Pteropus_vampyrus
ENSCSEG00000016127	lsm4	100	91.781	ENSPNYG00000016794	lsm4	100	89.726	Pundamilia_nyererei
ENSCSEG00000016127	lsm4	95	93.333	ENSPNAG00000016598	lsm4	100	81.481	Pygocentrus_nattereri
ENSCSEG00000016127	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	70	93.814	Rattus_norvegicus
ENSCSEG00000016127	lsm4	62	97.727	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSCSEG00000016127	lsm4	83	82.203	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSCSEG00000016127	lsm4	58	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSCSEG00000016127	lsm4	52	97.297	ENSSBOG00000022455	LSM4	66	95.181	Saimiri_boliviensis_boliviensis
ENSCSEG00000016127	lsm4	96	78.832	ENSSHAG00000011559	LSM4	70	96.907	Sarcophilus_harrisii
ENSCSEG00000016127	lsm4	100	91.608	ENSSFOG00015021067	lsm4	100	83.803	Scleropages_formosus
ENSCSEG00000016127	lsm4	100	82.000	ENSSMAG00000021020	lsm4	100	86.667	Scophthalmus_maximus
ENSCSEG00000016127	lsm4	100	82.036	ENSSDUG00000009588	lsm4	100	69.461	Seriola_dumerili
ENSCSEG00000016127	lsm4	100	81.548	ENSSLDG00000006827	lsm4	100	69.048	Seriola_lalandi_dorsalis
ENSCSEG00000016127	lsm4	61	98.851	ENSSPUG00000010166	LSM4	62	96.875	Sphenodon_punctatus
ENSCSEG00000016127	lsm4	100	90.066	ENSSPAG00000011615	lsm4	100	82.781	Stegastes_partitus
ENSCSEG00000016127	lsm4	62	97.727	ENSSSCG00000034314	LSM4	70	95.876	Sus_scrofa
ENSCSEG00000016127	lsm4	100	94.406	ENSTRUG00000021737	lsm4	100	91.608	Takifugu_rubripes
ENSCSEG00000016127	lsm4	100	89.583	ENSTNIG00000010191	lsm4	100	85.417	Tetraodon_nigroviridis
ENSCSEG00000016127	lsm4	74	91.429	ENSUAMG00000000665	LSM4	80	95.876	Ursus_americanus
ENSCSEG00000016127	lsm4	62	97.727	ENSUMAG00000009013	LSM4	70	95.876	Ursus_maritimus
ENSCSEG00000016127	lsm4	96	83.942	ENSXETG00000024933	lsm4	70	96.907	Xenopus_tropicalis
ENSCSEG00000016127	lsm4	100	93.706	ENSXMAG00000026672	lsm4	76	83.217	Xiphophorus_maculatus