EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016151 (Gene tree)
Gene ID: 103393052
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 13834 bases
Position: chr17:9367802-9381635
Accession: 103393052
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000025291	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSCSEP00000025298	MMR_HSR1	PF01926.23	1.7e-08	1	1
ENSCSEP00000025307	MMR_HSR1	PF01926.23	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000025644	-	1407	-	ENSCSEP00000025307	468 (aa)	-	-
ENSCSET00000025628	-	4119	XM_008329870	ENSCSEP00000025291	482 (aa)	XP_008328092	UPI0004968529
ENSCSET00000025636	-	4083	XM_008329871	ENSCSEP00000025298	470 (aa)	XP_008328093	UPI00049810DF

Gene Model

Click here to download ENSCSEG00000016151's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016151's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016151	srl	85	33.002	ENSCSEG00000019195	ehd3	73	33.002
ENSCSEG00000016151	srl	88	30.456	ENSCSEG00000001675	-	74	30.456
ENSCSEG00000016151	srl	85	33.002	ENSCSEG00000011195	ehd4	57	33.002
ENSCSEG00000016151	srl	99	72.532	ENSCSEG00000011866	SRL	94	72.068
ENSCSEG00000016151	srl	87	33.495	ENSCSEG00000007149	ehd2b	74	33.495
ENSCSEG00000016151	srl	83	32.474	ENSCSEG00000006078	ehd1a	70	32.474

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016151	srl	96	82.000	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSCSEG00000016151	srl	100	95.541	ENSAPOG00000018093	srl	100	95.541	Acanthochromis_polyacanthus
ENSCSEG00000016151	srl	95	76.524	ENSAPOG00000012432	SRL	99	76.524	Acanthochromis_polyacanthus
ENSCSEG00000016151	srl	99	80.728	ENSAMEG00000010862	SRL	53	80.728	Ailuropoda_melanoleuca
ENSCSEG00000016151	srl	96	75.893	ENSACIG00000015419	SRL	99	75.893	Amphilophus_citrinellus
ENSCSEG00000016151	srl	96	96.889	ENSACIG00000015799	srl	100	96.674	Amphilophus_citrinellus
ENSCSEG00000016151	srl	93	96.313	ENSAOCG00000007574	srl	100	96.313	Amphiprion_ocellaris
ENSCSEG00000016151	srl	95	76.802	ENSAOCG00000017049	SRL	100	75.000	Amphiprion_ocellaris
ENSCSEG00000016151	srl	97	71.678	ENSAPEG00000006533	SRL	100	72.174	Amphiprion_percula
ENSCSEG00000016151	srl	100	95.754	ENSAPEG00000006911	srl	100	95.754	Amphiprion_percula
ENSCSEG00000016151	srl	96	75.488	ENSATEG00000009643	SRL	53	75.705	Anabas_testudineus
ENSCSEG00000016151	srl	100	95.329	ENSATEG00000024315	srl	100	95.329	Anabas_testudineus
ENSCSEG00000016151	srl	94	84.547	ENSACAG00000016380	SRL	89	80.738	Anolis_carolinensis
ENSCSEG00000016151	srl	100	96.178	ENSACLG00000027685	srl	100	96.178	Astatotilapia_calliptera
ENSCSEG00000016151	srl	97	73.548	ENSACLG00000024674	SRL	58	73.650	Astatotilapia_calliptera
ENSCSEG00000016151	srl	90	77.857	ENSAMXG00000038693	SRL	100	73.951	Astyanax_mexicanus
ENSCSEG00000016151	srl	100	90.871	ENSAMXG00000018789	srl	92	90.871	Astyanax_mexicanus
ENSCSEG00000016151	srl	96	82.965	ENSBTAG00000001078	SRL	57	82.965	Bos_taurus
ENSCSEG00000016151	srl	94	83.032	ENSCJAG00000019750	SRL	100	79.915	Callithrix_jacchus
ENSCSEG00000016151	srl	100	80.000	ENSCAFG00000019233	SRL	87	80.000	Canis_familiaris
ENSCSEG00000016151	srl	97	81.798	ENSCAFG00020025024	SRL	56	82.119	Canis_lupus_dingo
ENSCSEG00000016151	srl	97	82.533	ENSCHIG00000017927	SRL	57	82.781	Capra_hircus
ENSCSEG00000016151	srl	100	80.550	ENSTSYG00000007919	SRL	99	84.186	Carlito_syrichta
ENSCSEG00000016151	srl	97	81.718	ENSCPOG00000012643	SRL	100	80.720	Cavia_porcellus
ENSCSEG00000016151	srl	94	77.828	ENSCCAG00000032646	SRL	100	84.697	Cebus_capucinus
ENSCSEG00000016151	srl	96	82.000	ENSCATG00000032227	-	100	79.915	Cercocebus_atys
ENSCSEG00000016151	srl	97	82.379	ENSCLAG00000016242	SRL	100	81.356	Chinchilla_lanigera
ENSCSEG00000016151	srl	82	86.494	ENSCHOG00000001618	SRL	52	86.494	Choloepus_hoffmanni
ENSCSEG00000016151	srl	96	86.528	ENSCPBG00000026371	SRL	98	82.316	Chrysemys_picta_bellii
ENSCSEG00000016151	srl	94	59.050	ENSCING00000005231	-	98	59.050	Ciona_intestinalis
ENSCSEG00000016151	srl	96	82.000	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSCSEG00000016151	srl	97	82.599	ENSCGRG00001016630	Srl	100	81.356	Cricetulus_griseus_chok1gshd
ENSCSEG00000016151	srl	97	82.599	ENSCGRG00000005458	Srl	100	81.356	Cricetulus_griseus_crigri
ENSCSEG00000016151	srl	97	74.359	ENSCVAG00000022465	SRL	62	74.359	Cyprinodon_variegatus
ENSCSEG00000016151	srl	100	94.043	ENSCVAG00000003513	srl	100	94.043	Cyprinodon_variegatus
ENSCSEG00000016151	srl	81	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSCSEG00000016151	srl	100	91.720	ENSDARG00000104587	srl	100	91.720	Danio_rerio
ENSCSEG00000016151	srl	96	82.667	ENSDNOG00000011643	SRL	54	82.340	Dasypus_novemcinctus
ENSCSEG00000016151	srl	97	82.599	ENSDORG00000014807	Srl	100	81.356	Dipodomys_ordii
ENSCSEG00000016151	srl	79	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSCSEG00000016151	srl	96	83.296	ENSEASG00005000942	SRL	55	82.781	Equus_asinus_asinus
ENSCSEG00000016151	srl	99	81.568	ENSECAG00000024219	SRL	99	81.568	Equus_caballus
ENSCSEG00000016151	srl	100	87.064	ENSELUG00000015616	srl	100	87.064	Esox_lucius
ENSCSEG00000016151	srl	100	80.127	ENSFCAG00000022075	SRL	100	80.973	Felis_catus
ENSCSEG00000016151	srl	99	80.819	ENSFALG00000004328	SRL	63	84.091	Ficedula_albicollis
ENSCSEG00000016151	srl	97	82.418	ENSFDAG00000006199	SRL	100	81.780	Fukomys_damarensis
ENSCSEG00000016151	srl	100	93.617	ENSFHEG00000011239	srl	100	93.617	Fundulus_heteroclitus
ENSCSEG00000016151	srl	100	72.934	ENSFHEG00000011854	SRL	99	76.233	Fundulus_heteroclitus
ENSCSEG00000016151	srl	94	91.630	ENSGMOG00000014954	srl	100	91.630	Gadus_morhua
ENSCSEG00000016151	srl	98	82.289	ENSGALG00000038884	SRL	98	82.289	Gallus_gallus
ENSCSEG00000016151	srl	100	94.681	ENSGAFG00000000010	srl	100	94.681	Gambusia_affinis
ENSCSEG00000016151	srl	96	77.283	ENSGAFG00000016984	SRL	100	77.283	Gambusia_affinis
ENSCSEG00000016151	srl	94	95.824	ENSGACG00000011332	srl	100	95.824	Gasterosteus_aculeatus
ENSCSEG00000016151	srl	96	82.000	ENSGGOG00000011312	-	100	79.704	Gorilla_gorilla
ENSCSEG00000016151	srl	96	74.082	ENSHBUG00000015710	SRL	58	74.082	Haplochromis_burtoni
ENSCSEG00000016151	srl	100	96.178	ENSHBUG00000007581	srl	100	96.178	Haplochromis_burtoni
ENSCSEG00000016151	srl	97	82.819	ENSHGLG00000015271	SRL	100	81.780	Heterocephalus_glaber_female
ENSCSEG00000016151	srl	97	82.819	ENSHGLG00100019378	SRL	100	81.780	Heterocephalus_glaber_male
ENSCSEG00000016151	srl	95	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSCSEG00000016151	srl	100	94.703	ENSHCOG00000008687	srl	99	95.991	Hippocampus_comes
ENSCSEG00000016151	srl	100	90.890	ENSIPUG00000012513	srl	100	90.890	Ictalurus_punctatus
ENSCSEG00000016151	srl	93	69.954	ENSIPUG00000011609	SRL	95	69.954	Ictalurus_punctatus
ENSCSEG00000016151	srl	99	80.994	ENSSTOG00000021151	-	100	80.932	Ictidomys_tridecemlineatus
ENSCSEG00000016151	srl	100	81.992	ENSJJAG00000016400	Srl	100	81.992	Jaculus_jaculus
ENSCSEG00000016151	srl	94	76.417	ENSKMAG00000019537	SRL	100	76.417	Kryptolebias_marmoratus
ENSCSEG00000016151	srl	98	94.565	ENSKMAG00000014115	srl	95	94.565	Kryptolebias_marmoratus
ENSCSEG00000016151	srl	97	73.420	ENSLBEG00000013811	SRL	99	73.638	Labrus_bergylta
ENSCSEG00000016151	srl	100	95.117	ENSLBEG00000026643	srl	100	95.117	Labrus_bergylta
ENSCSEG00000016151	srl	100	83.023	ENSLACG00000002825	SRL	100	84.735	Latimeria_chalumnae
ENSCSEG00000016151	srl	99	87.366	ENSLOCG00000002644	srl	99	87.366	Lepisosteus_oculatus
ENSCSEG00000016151	srl	99	80.130	ENSLAFG00000006329	SRL	53	80.130	Loxodonta_africana
ENSCSEG00000016151	srl	92	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSCSEG00000016151	srl	97	81.223	ENSMNEG00000019236	-	97	81.223	Macaca_nemestrina
ENSCSEG00000016151	srl	96	75.333	ENSMLEG00000032156	SRL	100	73.573	Mandrillus_leucophaeus
ENSCSEG00000016151	srl	99	92.719	ENSMAMG00000023322	srl	99	93.148	Mastacembelus_armatus
ENSCSEG00000016151	srl	94	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSCSEG00000016151	srl	100	96.178	ENSMZEG00005004548	srl	100	96.178	Maylandia_zebra
ENSCSEG00000016151	srl	96	73.866	ENSMZEG00005004010	SRL	58	73.866	Maylandia_zebra
ENSCSEG00000016151	srl	96	82.705	ENSMGAG00000009342	SRL	96	84.697	Meleagris_gallopavo
ENSCSEG00000016151	srl	99	80.994	ENSMICG00000032307	SRL	100	80.550	Microcebus_murinus
ENSCSEG00000016151	srl	100	80.508	ENSMOCG00000008208	Srl	100	80.508	Microtus_ochrogaster
ENSCSEG00000016151	srl	94	74.945	ENSMMOG00000021572	SRL	99	74.945	Mola_mola
ENSCSEG00000016151	srl	96	95.556	ENSMMOG00000013970	srl	100	95.556	Mola_mola
ENSCSEG00000016151	srl	96	83.556	ENSMODG00000016380	-	51	83.556	Monodelphis_domestica
ENSCSEG00000016151	srl	100	94.043	ENSMALG00000005039	srl	100	94.043	Monopterus_albus
ENSCSEG00000016151	srl	90	78.282	ENSMALG00000000670	SRL	98	78.282	Monopterus_albus
ENSCSEG00000016151	srl	97	83.260	MGP_CAROLIEiJ_G0020400	Srl	100	82.203	Mus_caroli
ENSCSEG00000016151	srl	97	83.260	ENSMUSG00000022519	Srl	100	82.203	Mus_musculus
ENSCSEG00000016151	srl	94	84.389	MGP_PahariEiJ_G0016108	Srl	50	82.495	Mus_pahari
ENSCSEG00000016151	srl	97	83.260	MGP_SPRETEiJ_G0021294	Srl	100	82.203	Mus_spretus
ENSCSEG00000016151	srl	97	82.159	ENSMPUG00000015025	SRL	55	82.483	Mustela_putorius_furo
ENSCSEG00000016151	srl	97	82.895	ENSMLUG00000030733	SRL	57	83.370	Myotis_lucifugus
ENSCSEG00000016151	srl	97	83.040	ENSNGAG00000019741	Srl	100	81.992	Nannospalax_galili
ENSCSEG00000016151	srl	96	73.434	ENSNBRG00000002422	SRL	58	73.434	Neolamprologus_brichardi
ENSCSEG00000016151	srl	100	95.754	ENSNBRG00000023775	srl	100	95.754	Neolamprologus_brichardi
ENSCSEG00000016151	srl	96	76.667	ENSNLEG00000029051	SRL	100	74.630	Nomascus_leucogenys
ENSCSEG00000016151	srl	97	75.983	ENSOPRG00000000477	-	54	75.983	Ochotona_princeps
ENSCSEG00000016151	srl	97	82.379	ENSODEG00000013256	SRL	100	80.932	Octodon_degus
ENSCSEG00000016151	srl	100	96.066	ENSONIG00000005192	srl	100	96.066	Oreochromis_niloticus
ENSCSEG00000016151	srl	96	81.637	ENSOCUG00000025140	SRL	50	81.637	Oryctolagus_cuniculus
ENSCSEG00000016151	srl	95	74.775	ENSORLG00000015064	SRL	97	74.944	Oryzias_latipes
ENSCSEG00000016151	srl	100	95.319	ENSORLG00000008291	srl	97	95.319	Oryzias_latipes
ENSCSEG00000016151	srl	100	95.319	ENSORLG00020019784	srl	85	95.319	Oryzias_latipes_hni
ENSCSEG00000016151	srl	95	75.000	ENSORLG00020018173	SRL	97	75.169	Oryzias_latipes_hni
ENSCSEG00000016151	srl	95	75.169	ENSORLG00015019063	SRL	97	75.169	Oryzias_latipes_hsok
ENSCSEG00000016151	srl	100	94.894	ENSORLG00015009342	srl	97	94.894	Oryzias_latipes_hsok
ENSCSEG00000016151	srl	95	73.465	ENSOMEG00000005682	SRL	53	73.742	Oryzias_melastigma
ENSCSEG00000016151	srl	100	94.681	ENSOMEG00000010006	srl	100	94.681	Oryzias_melastigma
ENSCSEG00000016151	srl	97	81.938	ENSOGAG00000029266	SRL	55	81.938	Otolemur_garnettii
ENSCSEG00000016151	srl	97	82.533	ENSOARG00000003074	SRL	57	82.965	Ovis_aries
ENSCSEG00000016151	srl	96	82.000	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSCSEG00000016151	srl	100	80.127	ENSPPRG00000010274	SRL	99	83.721	Panthera_pardus
ENSCSEG00000016151	srl	100	80.127	ENSPTIG00000015162	SRL	99	83.721	Panthera_tigris_altaica
ENSCSEG00000016151	srl	96	82.000	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSCSEG00000016151	srl	97	81.223	ENSPANG00000013804	SRL	98	81.223	Papio_anubis
ENSCSEG00000016151	srl	100	89.218	ENSPKIG00000006405	srl	100	89.218	Paramormyrops_kingsleyae
ENSCSEG00000016151	srl	100	78.344	ENSPKIG00000024974	SRL	94	78.344	Paramormyrops_kingsleyae
ENSCSEG00000016151	srl	95	83.521	ENSPSIG00000008586	SRL	50	83.521	Pelodiscus_sinensis
ENSCSEG00000016151	srl	95	74.944	ENSPMGG00000023505	-	100	74.944	Periophthalmus_magnuspinnatus
ENSCSEG00000016151	srl	97	94.053	ENSPMGG00000021081	srl	99	93.231	Periophthalmus_magnuspinnatus
ENSCSEG00000016151	srl	97	82.159	ENSPEMG00000015842	Srl	100	81.144	Peromyscus_maniculatus_bairdii
ENSCSEG00000016151	srl	90	68.879	ENSPMAG00000004786	srl	99	68.879	Petromyzon_marinus
ENSCSEG00000016151	srl	96	83.333	ENSPCIG00000012128	SRL	99	83.149	Phascolarctos_cinereus
ENSCSEG00000016151	srl	100	94.398	ENSPFOG00000011408	srl	98	92.453	Poecilia_formosa
ENSCSEG00000016151	srl	96	75.947	ENSPLAG00000002932	SRL	100	75.947	Poecilia_latipinna
ENSCSEG00000016151	srl	98	93.682	ENSPLAG00000008017	srl	100	93.275	Poecilia_latipinna
ENSCSEG00000016151	srl	97	74.359	ENSPMEG00000005890	SRL	61	73.932	Poecilia_mexicana
ENSCSEG00000016151	srl	100	94.468	ENSPMEG00000006745	srl	100	93.275	Poecilia_mexicana
ENSCSEG00000016151	srl	100	94.043	ENSPREG00000007751	srl	100	94.457	Poecilia_reticulata
ENSCSEG00000016151	srl	96	76.615	ENSPREG00000000315	SRL	100	76.615	Poecilia_reticulata
ENSCSEG00000016151	srl	90	84.726	ENSPPYG00000007053	SRL	98	84.726	Pongo_abelii
ENSCSEG00000016151	srl	96	82.705	ENSPCAG00000003378	-	51	82.705	Procavia_capensis
ENSCSEG00000016151	srl	96	82.522	ENSPCOG00000023135	SRL	99	83.953	Propithecus_coquereli
ENSCSEG00000016151	srl	97	82.379	ENSPVAG00000006586	SRL	56	82.379	Pteropus_vampyrus
ENSCSEG00000016151	srl	96	73.866	ENSPNYG00000003423	SRL	58	73.866	Pundamilia_nyererei
ENSCSEG00000016151	srl	100	95.966	ENSPNYG00000001200	srl	100	95.966	Pundamilia_nyererei
ENSCSEG00000016151	srl	94	76.190	ENSPNAG00000007361	-	91	76.190	Pygocentrus_nattereri
ENSCSEG00000016151	srl	100	90.456	ENSPNAG00000023106	srl	100	90.456	Pygocentrus_nattereri
ENSCSEG00000016151	srl	97	82.713	ENSRNOG00000005269	Srl	51	82.713	Rattus_norvegicus
ENSCSEG00000016151	srl	96	82.000	ENSRBIG00000042358	SRL	50	82.000	Rhinopithecus_bieti
ENSCSEG00000016151	srl	94	83.032	ENSSBOG00000029273	SRL	100	79.915	Saimiri_boliviensis_boliviensis
ENSCSEG00000016151	srl	97	82.637	ENSSHAG00000011715	-	51	83.333	Sarcophilus_harrisii
ENSCSEG00000016151	srl	100	90.083	ENSSFOG00015009773	srl	100	90.083	Scleropages_formosus
ENSCSEG00000016151	srl	95	77.578	ENSSFOG00015021327	SRL	50	77.455	Scleropages_formosus
ENSCSEG00000016151	srl	96	73.002	ENSSMAG00000002232	SRL	50	74.066	Scophthalmus_maximus
ENSCSEG00000016151	srl	100	95.117	ENSSMAG00000016274	srl	100	95.117	Scophthalmus_maximus
ENSCSEG00000016151	srl	96	76.096	ENSSDUG00000009161	SRL	100	76.096	Seriola_dumerili
ENSCSEG00000016151	srl	95	95.964	ENSSDUG00000010808	srl	98	95.964	Seriola_dumerili
ENSCSEG00000016151	srl	95	76.638	ENSSLDG00000014601	SRL	100	77.193	Seriola_lalandi_dorsalis
ENSCSEG00000016151	srl	100	95.319	ENSSLDG00000022024	srl	100	95.319	Seriola_lalandi_dorsalis
ENSCSEG00000016151	srl	95	83.371	ENSSPUG00000016859	SRL	98	83.371	Sphenodon_punctatus
ENSCSEG00000016151	srl	94	78.005	ENSSPAG00000014254	SRL	98	78.005	Stegastes_partitus
ENSCSEG00000016151	srl	100	95.551	ENSSPAG00000019105	srl	100	95.551	Stegastes_partitus
ENSCSEG00000016151	srl	96	82.080	ENSSSCG00000007949	SRL	98	83.220	Sus_scrofa
ENSCSEG00000016151	srl	94	84.318	ENSTGUG00000003951	-	97	84.318	Taeniopygia_guttata
ENSCSEG00000016151	srl	77	87.293	ENSTGUG00000016121	-	100	87.293	Taeniopygia_guttata
ENSCSEG00000016151	srl	100	95.957	ENSTRUG00000006005	srl	100	95.957	Takifugu_rubripes
ENSCSEG00000016151	srl	90	78.759	ENSTRUG00000013310	SRL	55	78.759	Takifugu_rubripes
ENSCSEG00000016151	srl	100	95.319	ENSTNIG00000009739	srl	100	95.319	Tetraodon_nigroviridis
ENSCSEG00000016151	srl	96	82.561	ENSUAMG00000005701	SRL	56	82.561	Ursus_americanus
ENSCSEG00000016151	srl	96	82.561	ENSUMAG00000002574	SRL	56	82.561	Ursus_maritimus
ENSCSEG00000016151	srl	97	81.938	ENSVVUG00000016331	-	50	82.119	Vulpes_vulpes
ENSCSEG00000016151	srl	99	80.342	ENSXETG00000017313	srl	99	82.812	Xenopus_tropicalis
ENSCSEG00000016151	srl	90	95.012	ENSXCOG00000010424	srl	97	95.012	Xiphophorus_couchianus
ENSCSEG00000016151	srl	96	77.111	ENSXCOG00000014584	SRL	100	76.940	Xiphophorus_couchianus
ENSCSEG00000016151	srl	100	93.830	ENSXMAG00000004625	srl	95	93.830	Xiphophorus_maculatus
ENSCSEG00000016151	srl	97	74.573	ENSXMAG00000027598	SRL	64	74.573	Xiphophorus_maculatus