EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016159 (Gene tree)
Gene ID: 103394659
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 9675 bases
Position: chr2:4555330-4565004
Accession: 103394659
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000025320	UPF1_Zn_bind	PF09416.10	1e-74	1	1
ENSCSEP00000025320	ResIII	PF04851.15	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000025657	-	5261	XM_017030693	ENSCSEP00000025320	1098 (aa)	XP_016886182	UPI00049581E0

Gene Model

Click here to download ENSCSEG00000016159's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016159's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016159	-	100	87.568	ENSCSEG00000017239	upf1	100	87.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016159	-	100	92.411	ENSG00000005007	UPF1	100	92.500	Homo_sapiens
ENSCSEG00000016159	-	100	98.365	ENSAPOG00000010916	-	100	98.365	Acanthochromis_polyacanthus
ENSCSEG00000016159	-	100	93.291	ENSAPOG00000023773	upf1	100	93.472	Acanthochromis_polyacanthus
ENSCSEG00000016159	-	100	91.918	ENSAMEG00000011474	UPF1	100	92.007	Ailuropoda_melanoleuca
ENSCSEG00000016159	-	100	93.449	ENSACIG00000019949	upf1	100	93.478	Amphilophus_citrinellus
ENSCSEG00000016159	-	93	98.146	ENSACIG00000010985	-	100	98.146	Amphilophus_citrinellus
ENSCSEG00000016159	-	100	98.183	ENSAOCG00000006352	-	100	98.183	Amphiprion_ocellaris
ENSCSEG00000016159	-	100	92.805	ENSAOCG00000018519	upf1	100	93.543	Amphiprion_ocellaris
ENSCSEG00000016159	-	100	98.093	ENSAPEG00000006292	-	100	98.093	Amphiprion_percula
ENSCSEG00000016159	-	100	92.805	ENSAPEG00000016344	upf1	100	93.543	Amphiprion_percula
ENSCSEG00000016159	-	100	98.456	ENSATEG00000016606	-	100	98.456	Anabas_testudineus
ENSCSEG00000016159	-	100	91.585	ENSATEG00000017867	upf1	100	92.838	Anabas_testudineus
ENSCSEG00000016159	-	95	94.123	ENSAPLG00000009175	UPF1	100	94.123	Anas_platyrhynchos
ENSCSEG00000016159	-	95	92.490	ENSANAG00000024107	UPF1	95	92.490	Aotus_nancymaae
ENSCSEG00000016159	-	100	97.822	ENSACLG00000022630	-	100	97.822	Astatotilapia_calliptera
ENSCSEG00000016159	-	100	93.358	ENSACLG00000007181	upf1	100	93.388	Astatotilapia_calliptera
ENSCSEG00000016159	-	100	94.192	ENSAMXG00000042187	upf1	100	94.737	Astyanax_mexicanus
ENSCSEG00000016159	-	100	91.933	ENSBTAG00000020922	UPF1	100	92.021	Bos_taurus
ENSCSEG00000016159	-	90	51.859	WBGene00004880	smg-2	99	49.401	Caenorhabditis_elegans
ENSCSEG00000016159	-	100	91.512	ENSCJAG00000019627	UPF1	100	91.600	Callithrix_jacchus
ENSCSEG00000016159	-	100	91.689	ENSCAFG00000014578	UPF1	100	91.777	Canis_familiaris
ENSCSEG00000016159	-	100	92.589	ENSCAFG00020012347	UPF1	100	92.679	Canis_lupus_dingo
ENSCSEG00000016159	-	100	92.838	ENSCHIG00000011018	UPF1	100	92.927	Capra_hircus
ENSCSEG00000016159	-	95	93.631	ENSTSYG00000008877	UPF1	98	93.631	Carlito_syrichta
ENSCSEG00000016159	-	96	93.045	ENSCAPG00000005758	UPF1	95	93.631	Cavia_aperea
ENSCSEG00000016159	-	100	92.716	ENSCPOG00000025463	UPF1	100	92.716	Cavia_porcellus
ENSCSEG00000016159	-	100	92.411	ENSCCAG00000032175	UPF1	100	92.500	Cebus_capucinus
ENSCSEG00000016159	-	94	94.078	ENSCATG00000040306	UPF1	97	94.078	Cercocebus_atys
ENSCSEG00000016159	-	95	93.821	ENSCLAG00000004037	UPF1	99	93.821	Chinchilla_lanigera
ENSCSEG00000016159	-	100	92.411	ENSCSAG00000005276	UPF1	100	92.500	Chlorocebus_sabaeus
ENSCSEG00000016159	-	100	92.729	ENSCPBG00000012513	UPF1	100	92.729	Chrysemys_picta_bellii
ENSCSEG00000016159	-	77	79.601	ENSCING00000021399	-	99	79.484	Ciona_intestinalis
ENSCSEG00000016159	-	99	73.514	ENSCSAVG00000006533	-	99	73.514	Ciona_savignyi
ENSCSEG00000016159	-	95	93.821	ENSCANG00000029819	UPF1	97	93.821	Colobus_angolensis_palliatus
ENSCSEG00000016159	-	100	92.377	ENSCGRG00001021067	Upf1	100	92.466	Cricetulus_griseus_chok1gshd
ENSCSEG00000016159	-	95	93.346	ENSCGRG00000013480	Upf1	98	93.346	Cricetulus_griseus_crigri
ENSCSEG00000016159	-	100	97.548	ENSCVAG00000010561	upf1	100	97.548	Cyprinodon_variegatus
ENSCSEG00000016159	-	100	93.739	ENSDARG00000016302	upf1	100	94.374	Danio_rerio
ENSCSEG00000016159	-	95	91.445	ENSDORG00000009984	Upf1	95	91.445	Dipodomys_ordii
ENSCSEG00000016159	-	86	72.000	FBgn0030354	Upf1	84	69.376	Drosophila_melanogaster
ENSCSEG00000016159	-	54	86.589	ENSEBUG00000010069	upf1	96	86.921	Eptatretus_burgeri
ENSCSEG00000016159	-	100	92.748	ENSEASG00005006549	UPF1	100	92.838	Equus_asinus_asinus
ENSCSEG00000016159	-	100	92.748	ENSECAG00000010639	UPF1	100	92.838	Equus_caballus
ENSCSEG00000016159	-	100	92.593	ENSELUG00000020917	upf1	100	92.502	Esox_lucius
ENSCSEG00000016159	-	100	93.863	ENSELUG00000012916	-	100	94.404	Esox_lucius
ENSCSEG00000016159	-	100	91.600	ENSFCAG00000009757	UPF1	100	91.689	Felis_catus
ENSCSEG00000016159	-	95	94.752	ENSFALG00000009312	UPF1	96	94.752	Ficedula_albicollis
ENSCSEG00000016159	-	95	93.726	ENSFDAG00000014816	UPF1	99	93.726	Fukomys_damarensis
ENSCSEG00000016159	-	100	89.337	ENSFHEG00000006428	upf1	100	89.337	Fundulus_heteroclitus
ENSCSEG00000016159	-	86	97.278	ENSFHEG00000016276	-	96	97.278	Fundulus_heteroclitus
ENSCSEG00000016159	-	100	94.059	ENSGMOG00000007541	upf1	100	94.419	Gadus_morhua
ENSCSEG00000016159	-	100	92.665	ENSGALG00000003220	UPF1	100	92.576	Gallus_gallus
ENSCSEG00000016159	-	100	97.725	ENSGAFG00000004831	upf1	100	97.725	Gambusia_affinis
ENSCSEG00000016159	-	64	92.050	ENSGAFG00000015443	-	88	92.050	Gambusia_affinis
ENSCSEG00000016159	-	100	93.237	ENSGAGG00000022217	UPF1	100	93.327	Gopherus_agassizii
ENSCSEG00000016159	-	95	94.813	ENSGGOG00000002608	UPF1	99	94.813	Gorilla_gorilla
ENSCSEG00000016159	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCSEG00000016159	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSCSEG00000016159	-	100	91.247	ENSHGLG00000010900	UPF1	100	91.335	Heterocephalus_glaber_female
ENSCSEG00000016159	-	95	92.015	ENSHGLG00100005904	UPF1	96	92.015	Heterocephalus_glaber_male
ENSCSEG00000016159	-	100	97.636	ENSHCOG00000008918	upf1	100	97.636	Hippocampus_comes
ENSCSEG00000016159	-	100	94.192	ENSIPUG00000005108	UPF1	100	94.737	Ictalurus_punctatus
ENSCSEG00000016159	-	100	92.411	ENSSTOG00000009196	UPF1	100	92.500	Ictidomys_tridecemlineatus
ENSCSEG00000016159	-	100	91.459	ENSJJAG00000023151	Upf1	100	91.548	Jaculus_jaculus
ENSCSEG00000016159	-	100	97.820	ENSKMAG00000004962	upf1	100	97.820	Kryptolebias_marmoratus
ENSCSEG00000016159	-	100	97.731	ENSLBEG00000027848	-	100	97.731	Labrus_bergylta
ENSCSEG00000016159	-	100	91.390	ENSLBEG00000014862	upf1	100	92.556	Labrus_bergylta
ENSCSEG00000016159	-	63	94.269	ENSLACG00000008482	UPF1	100	94.269	Latimeria_chalumnae
ENSCSEG00000016159	-	100	95.095	ENSLOCG00000002072	upf1	100	95.550	Lepisosteus_oculatus
ENSCSEG00000016159	-	100	91.320	ENSLAFG00000014963	UPF1	100	91.408	Loxodonta_africana
ENSCSEG00000016159	-	100	92.164	ENSMFAG00000037748	UPF1	100	92.253	Macaca_fascicularis
ENSCSEG00000016159	-	100	91.918	ENSMMUG00000023286	UPF1	100	92.007	Macaca_mulatta
ENSCSEG00000016159	-	100	92.164	ENSMNEG00000000046	UPF1	100	92.253	Macaca_nemestrina
ENSCSEG00000016159	-	95	93.821	ENSMLEG00000028404	UPF1	99	93.821	Mandrillus_leucophaeus
ENSCSEG00000016159	-	100	91.943	ENSMAMG00000006229	upf1	100	93.286	Mastacembelus_armatus
ENSCSEG00000016159	-	100	97.822	ENSMAMG00000006231	-	100	97.822	Mastacembelus_armatus
ENSCSEG00000016159	-	100	97.822	ENSMZEG00005016386	-	100	97.822	Maylandia_zebra
ENSCSEG00000016159	-	100	92.032	ENSMZEG00005003489	upf1	100	93.165	Maylandia_zebra
ENSCSEG00000016159	-	95	93.637	ENSMGAG00000004745	UPF1	100	93.637	Meleagris_gallopavo
ENSCSEG00000016159	-	95	93.346	ENSMAUG00000011398	Upf1	95	93.346	Mesocricetus_auratus
ENSCSEG00000016159	-	100	92.321	ENSMICG00000001659	UPF1	100	92.411	Microcebus_murinus
ENSCSEG00000016159	-	100	91.474	ENSMOCG00000005699	Upf1	100	91.652	Microtus_ochrogaster
ENSCSEG00000016159	-	100	92.532	ENSMMOG00000007881	upf1	100	93.176	Mola_mola
ENSCSEG00000016159	-	95	95.885	ENSMMOG00000007537	-	99	95.885	Mola_mola
ENSCSEG00000016159	-	100	91.534	ENSMODG00000003689	UPF1	100	91.711	Monodelphis_domestica
ENSCSEG00000016159	-	100	96.561	ENSMALG00000018100	-	100	96.561	Monopterus_albus
ENSCSEG00000016159	-	100	92.714	ENSMALG00000000144	upf1	100	92.987	Monopterus_albus
ENSCSEG00000016159	-	100	92.287	MGP_CAROLIEiJ_G0031142	Upf1	100	92.377	Mus_caroli
ENSCSEG00000016159	-	100	92.287	ENSMUSG00000058301	Upf1	100	92.377	Mus_musculus
ENSCSEG00000016159	-	100	92.287	MGP_PahariEiJ_G0021607	Upf1	100	92.377	Mus_pahari
ENSCSEG00000016159	-	100	92.287	MGP_SPRETEiJ_G0032260	Upf1	100	92.377	Mus_spretus
ENSCSEG00000016159	-	100	92.589	ENSMPUG00000015516	UPF1	100	92.679	Mustela_putorius_furo
ENSCSEG00000016159	-	99	92.384	ENSMLUG00000012122	UPF1	99	92.473	Myotis_lucifugus
ENSCSEG00000016159	-	100	91.054	ENSNGAG00000024107	Upf1	100	91.143	Nannospalax_galili
ENSCSEG00000016159	-	100	91.629	ENSNBRG00000000670	upf1	100	91.667	Neolamprologus_brichardi
ENSCSEG00000016159	-	100	94.226	ENSNBRG00000022069	-	100	97.087	Neolamprologus_brichardi
ENSCSEG00000016159	-	95	88.023	ENSNLEG00000006062	UPF1	99	88.023	Nomascus_leucogenys
ENSCSEG00000016159	-	83	89.237	ENSMEUG00000014146	-	83	89.237	Notamacropus_eugenii
ENSCSEG00000016159	-	95	87.512	ENSOPRG00000014018	UPF1	99	87.512	Ochotona_princeps
ENSCSEG00000016159	-	100	92.709	ENSODEG00000012426	UPF1	100	92.709	Octodon_degus
ENSCSEG00000016159	-	100	92.301	ENSONIG00000010452	upf1	100	93.435	Oreochromis_niloticus
ENSCSEG00000016159	-	100	97.913	ENSONIG00000012729	-	100	97.913	Oreochromis_niloticus
ENSCSEG00000016159	-	100	91.578	ENSOANG00000004568	UPF1	100	91.489	Ornithorhynchus_anatinus
ENSCSEG00000016159	-	100	97.003	ENSORLG00000008453	upf1	100	97.003	Oryzias_latipes
ENSCSEG00000016159	-	100	96.915	ENSORLG00020014758	upf1	100	96.915	Oryzias_latipes_hni
ENSCSEG00000016159	-	100	96.915	ENSORLG00015010165	upf1	100	96.915	Oryzias_latipes_hsok
ENSCSEG00000016159	-	100	97.275	ENSOMEG00000003665	upf1	100	97.275	Oryzias_melastigma
ENSCSEG00000016159	-	100	92.500	ENSOGAG00000012866	UPF1	100	92.589	Otolemur_garnettii
ENSCSEG00000016159	-	96	90.800	ENSOARG00000010739	UPF1	100	90.708	Ovis_aries
ENSCSEG00000016159	-	95	93.750	ENSPPAG00000043884	UPF1	96	93.750	Pan_paniscus
ENSCSEG00000016159	-	100	91.600	ENSPPRG00000023470	UPF1	100	91.689	Panthera_pardus
ENSCSEG00000016159	-	95	92.809	ENSPTIG00000010159	UPF1	99	92.809	Panthera_tigris_altaica
ENSCSEG00000016159	-	100	92.164	ENSPTRG00000010721	UPF1	100	92.253	Pan_troglodytes
ENSCSEG00000016159	-	100	92.164	ENSPANG00000008847	UPF1	100	92.253	Papio_anubis
ENSCSEG00000016159	-	92	94.581	ENSPKIG00000006069	upf1	97	94.581	Paramormyrops_kingsleyae
ENSCSEG00000016159	-	70	93.603	ENSPSIG00000009491	UPF1	100	93.603	Pelodiscus_sinensis
ENSCSEG00000016159	-	100	91.033	ENSPMGG00000017327	upf1	100	91.493	Periophthalmus_magnuspinnatus
ENSCSEG00000016159	-	100	91.474	ENSPEMG00000001085	Upf1	100	91.563	Peromyscus_maniculatus_bairdii
ENSCSEG00000016159	-	100	87.715	ENSPMAG00000001206	upf1	100	87.715	Petromyzon_marinus
ENSCSEG00000016159	-	100	92.940	ENSPCIG00000006156	UPF1	100	93.029	Phascolarctos_cinereus
ENSCSEG00000016159	-	100	97.816	ENSPLAG00000016232	-	100	97.816	Poecilia_latipinna
ENSCSEG00000016159	-	100	90.901	ENSPLAG00000018155	-	100	90.901	Poecilia_latipinna
ENSCSEG00000016159	-	100	91.470	ENSPMEG00000011443	-	100	91.470	Poecilia_mexicana
ENSCSEG00000016159	-	100	97.727	ENSPMEG00000016319	-	100	97.727	Poecilia_mexicana
ENSCSEG00000016159	-	100	91.277	ENSPREG00000009940	upf1	100	91.277	Poecilia_reticulata
ENSCSEG00000016159	-	100	97.543	ENSPREG00000011247	-	100	97.543	Poecilia_reticulata
ENSCSEG00000016159	-	100	86.649	ENSPPYG00000009752	UPF1	100	86.737	Pongo_abelii
ENSCSEG00000016159	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSCSEG00000016159	-	100	92.089	ENSPCOG00000023813	UPF1	100	92.178	Propithecus_coquereli
ENSCSEG00000016159	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCSEG00000016159	-	100	92.032	ENSPNYG00000003694	upf1	100	93.165	Pundamilia_nyererei
ENSCSEG00000016159	-	100	97.822	ENSPNYG00000016731	-	100	97.822	Pundamilia_nyererei
ENSCSEG00000016159	-	100	93.739	ENSPNAG00000025614	upf1	100	94.283	Pygocentrus_nattereri
ENSCSEG00000016159	-	100	92.287	ENSRNOG00000020134	Upf1	100	92.377	Rattus_norvegicus
ENSCSEG00000016159	-	95	91.445	ENSRBIG00000013894	UPF1	98	94.639	Rhinopithecus_bieti
ENSCSEG00000016159	-	95	93.821	ENSRROG00000040935	UPF1	98	94.639	Rhinopithecus_roxellana
ENSCSEG00000016159	-	73	57.947	YMR080C	NAM7	82	57.947	Saccharomyces_cerevisiae
ENSCSEG00000016159	-	94	94.078	ENSSBOG00000023632	UPF1	96	94.078	Saimiri_boliviensis_boliviensis
ENSCSEG00000016159	-	95	94.023	ENSSHAG00000010499	UPF1	100	94.023	Sarcophilus_harrisii
ENSCSEG00000016159	-	100	94.828	ENSSFOG00015021095	upf1	100	95.281	Scleropages_formosus
ENSCSEG00000016159	-	100	91.300	ENSSMAG00000005055	upf1	100	92.377	Scophthalmus_maximus
ENSCSEG00000016159	-	100	98.094	ENSSMAG00000021018	-	100	98.094	Scophthalmus_maximus
ENSCSEG00000016159	-	100	91.764	ENSSDUG00000013320	upf1	100	93.196	Seriola_dumerili
ENSCSEG00000016159	-	100	98.457	ENSSDUG00000009629	-	100	98.457	Seriola_dumerili
ENSCSEG00000016159	-	100	98.457	ENSSLDG00000006878	-	100	98.457	Seriola_lalandi_dorsalis
ENSCSEG00000016159	-	100	92.593	ENSSLDG00000020868	upf1	100	93.417	Seriola_lalandi_dorsalis
ENSCSEG00000016159	-	100	93.069	ENSSPUG00000010538	UPF1	100	93.159	Sphenodon_punctatus
ENSCSEG00000016159	-	100	98.273	ENSSPAG00000011521	-	100	98.273	Stegastes_partitus
ENSCSEG00000016159	-	100	90.934	ENSSPAG00000000003	upf1	100	91.206	Stegastes_partitus
ENSCSEG00000016159	-	100	92.748	ENSSSCG00000039301	UPF1	99	94.823	Sus_scrofa
ENSCSEG00000016159	-	82	86.702	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSCSEG00000016159	-	100	96.724	ENSTRUG00000005131	-	100	96.724	Takifugu_rubripes
ENSCSEG00000016159	-	100	92.532	ENSTRUG00000000150	upf1	100	92.539	Takifugu_rubripes
ENSCSEG00000016159	-	100	89.078	ENSTTRG00000011544	UPF1	100	89.078	Tursiops_truncatus
ENSCSEG00000016159	-	100	92.500	ENSUAMG00000007093	UPF1	100	92.589	Ursus_americanus
ENSCSEG00000016159	-	95	94.823	ENSUMAG00000006652	UPF1	99	95.233	Ursus_maritimus
ENSCSEG00000016159	-	100	92.589	ENSVVUG00000007797	UPF1	100	92.679	Vulpes_vulpes
ENSCSEG00000016159	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSCSEG00000016159	-	97	91.423	ENSXCOG00000015275	-	96	91.423	Xiphophorus_couchianus
ENSCSEG00000016159	-	94	97.961	ENSXCOG00000005764	-	100	97.961	Xiphophorus_couchianus
ENSCSEG00000016159	-	100	91.621	ENSXMAG00000001703	-	100	91.621	Xiphophorus_maculatus
ENSCSEG00000016159	-	100	97.545	ENSXMAG00000002540	-	100	97.545	Xiphophorus_maculatus