EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016399 (Gene tree)
Gene ID: 103397587
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 18811 bases
Position: chrZ:5135139-5153949
Accession: 103397587
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000025762	ResIII	PF04851.15	2e-26	1	2
ENSCSEP00000025762	ResIII	PF04851.15	2e-26	2	2
ENSCSEP00000025796	ResIII	PF04851.15	4.7e-16	1	1
ENSCSEP00000025762	DEAD	PF00270.29	6e-54	1	2
ENSCSEP00000025762	DEAD	PF00270.29	6e-54	2	2
ENSCSEP00000025796	DEAD	PF00270.29	1e-36	1	2
ENSCSEP00000025796	DEAD	PF00270.29	1e-36	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000026099	-	10712	XM_008335903	ENSCSEP00000025762	2133 (aa)	XP_008334125	UPI000496FADC
ENSCSET00000026133	-	6282	-	ENSCSEP00000025796	2093 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000016399's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016399	snrnp200	64	31.825	ENSCSEG00000017659	hfm1	67	31.825
ENSCSEG00000016399	snrnp200	95	39.813	ENSCSEG00000012811	ascc3	96	39.569

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016399	snrnp200	100	89.888	ENSG00000144028	SNRNP200	100	89.888	Homo_sapiens
ENSCSEG00000016399	snrnp200	100	96.532	ENSAPOG00000010223	snrnp200	99	96.532	Acanthochromis_polyacanthus
ENSCSEG00000016399	snrnp200	100	89.934	ENSAMEG00000008996	SNRNP200	100	89.934	Ailuropoda_melanoleuca
ENSCSEG00000016399	snrnp200	97	96.034	ENSACIG00000001764	snrnp200	98	96.086	Amphilophus_citrinellus
ENSCSEG00000016399	snrnp200	99	96.425	ENSAOCG00000024593	snrnp200	100	95.552	Amphiprion_ocellaris
ENSCSEG00000016399	snrnp200	97	95.659	ENSAPEG00000012554	snrnp200	100	95.659	Amphiprion_percula
ENSCSEG00000016399	snrnp200	100	96.485	ENSATEG00000022522	snrnp200	99	96.485	Anabas_testudineus
ENSCSEG00000016399	snrnp200	99	89.769	ENSAPLG00000004313	SNRNP200	100	89.769	Anas_platyrhynchos
ENSCSEG00000016399	snrnp200	99	88.999	ENSACAG00000000434	SNRNP200	100	88.999	Anolis_carolinensis
ENSCSEG00000016399	snrnp200	100	87.202	ENSANAG00000036625	SNRNP200	100	87.202	Aotus_nancymaae
ENSCSEG00000016399	snrnp200	99	96.049	ENSACLG00000011188	snrnp200	99	95.923	Astatotilapia_calliptera
ENSCSEG00000016399	snrnp200	99	94.403	ENSAMXG00000005684	snrnp200	99	94.283	Astyanax_mexicanus
ENSCSEG00000016399	snrnp200	100	89.747	ENSBTAG00000000848	SNRNP200	100	89.747	Bos_taurus
ENSCSEG00000016399	snrnp200	100	89.888	ENSCJAG00000007514	SNRNP200	100	89.888	Callithrix_jacchus
ENSCSEG00000016399	snrnp200	100	89.174	ENSCAFG00020019979	SNRNP200	100	90.782	Canis_lupus_dingo
ENSCSEG00000016399	snrnp200	100	89.700	ENSCHIG00000020611	SNRNP200	100	89.700	Capra_hircus
ENSCSEG00000016399	snrnp200	100	89.934	ENSTSYG00000010467	SNRNP200	100	89.934	Carlito_syrichta
ENSCSEG00000016399	snrnp200	99	89.516	ENSCAPG00000017234	SNRNP200	99	89.516	Cavia_aperea
ENSCSEG00000016399	snrnp200	100	89.841	ENSCPOG00000006776	SNRNP200	100	89.841	Cavia_porcellus
ENSCSEG00000016399	snrnp200	100	89.888	ENSCCAG00000033962	SNRNP200	100	89.888	Cebus_capucinus
ENSCSEG00000016399	snrnp200	100	89.888	ENSCATG00000015790	SNRNP200	100	89.888	Cercocebus_atys
ENSCSEG00000016399	snrnp200	100	89.888	ENSCLAG00000004116	SNRNP200	100	89.888	Chinchilla_lanigera
ENSCSEG00000016399	snrnp200	100	89.934	ENSCSAG00000017369	SNRNP200	100	89.934	Chlorocebus_sabaeus
ENSCSEG00000016399	snrnp200	75	93.701	ENSCHOG00000012981	-	58	93.701	Choloepus_hoffmanni
ENSCSEG00000016399	snrnp200	100	89.621	ENSCPBG00000022571	SNRNP200	100	89.621	Chrysemys_picta_bellii
ENSCSEG00000016399	snrnp200	99	75.654	ENSCING00000005082	-	99	75.748	Ciona_intestinalis
ENSCSEG00000016399	snrnp200	100	84.540	ENSCANG00000033932	SNRNP200	100	89.547	Colobus_angolensis_palliatus
ENSCSEG00000016399	snrnp200	100	89.934	ENSCGRG00001022610	Snrnp200	100	89.934	Cricetulus_griseus_chok1gshd
ENSCSEG00000016399	snrnp200	100	89.434	ENSCGRG00000016472	Snrnp200	100	89.434	Cricetulus_griseus_crigri
ENSCSEG00000016399	snrnp200	100	92.216	ENSCVAG00000017631	snrnp200	99	92.216	Cyprinodon_variegatus
ENSCSEG00000016399	snrnp200	100	93.580	ENSDARG00000077536	snrnp200	99	93.580	Danio_rerio
ENSCSEG00000016399	snrnp200	100	88.624	ENSDNOG00000011227	SNRNP200	100	88.624	Dasypus_novemcinctus
ENSCSEG00000016399	snrnp200	100	87.477	ENSDORG00000005861	Snrnp200	100	87.477	Dipodomys_ordii
ENSCSEG00000016399	snrnp200	100	73.510	FBgn0263599	l(3)72Ab	100	73.510	Drosophila_melanogaster
ENSCSEG00000016399	snrnp200	95	89.147	ENSETEG00000000162	SNRNP200	74	89.147	Echinops_telfairi
ENSCSEG00000016399	snrnp200	83	80.538	ENSEBUG00000016524	snrnp200	95	80.538	Eptatretus_burgeri
ENSCSEG00000016399	snrnp200	100	88.858	ENSEASG00005001884	SNRNP200	100	88.765	Equus_asinus_asinus
ENSCSEG00000016399	snrnp200	100	89.934	ENSECAG00000019675	SNRNP200	100	89.934	Equus_caballus
ENSCSEG00000016399	snrnp200	91	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSCSEG00000016399	snrnp200	99	95.252	ENSELUG00000018948	snrnp200	99	95.129	Esox_lucius
ENSCSEG00000016399	snrnp200	100	89.981	ENSFCAG00000010699	SNRNP200	100	89.981	Felis_catus
ENSCSEG00000016399	snrnp200	93	86.607	ENSFALG00000001368	-	95	86.607	Ficedula_albicollis
ENSCSEG00000016399	snrnp200	100	89.794	ENSFDAG00000004683	SNRNP200	100	89.794	Fukomys_damarensis
ENSCSEG00000016399	snrnp200	100	95.129	ENSFHEG00000003786	snrnp200	99	95.129	Fundulus_heteroclitus
ENSCSEG00000016399	snrnp200	100	93.779	ENSGMOG00000004881	snrnp200	99	93.779	Gadus_morhua
ENSCSEG00000016399	snrnp200	100	95.129	ENSGAFG00000010807	snrnp200	99	95.129	Gambusia_affinis
ENSCSEG00000016399	snrnp200	100	95.372	ENSGACG00000011474	snrnp200	99	95.418	Gasterosteus_aculeatus
ENSCSEG00000016399	snrnp200	95	89.666	ENSGAGG00000016069	SNRNP200	92	96.774	Gopherus_agassizii
ENSCSEG00000016399	snrnp200	100	89.888	ENSGGOG00000005174	SNRNP200	100	89.888	Gorilla_gorilla
ENSCSEG00000016399	snrnp200	97	93.212	ENSHBUG00000011322	snrnp200	99	93.212	Haplochromis_burtoni
ENSCSEG00000016399	snrnp200	100	89.841	ENSHGLG00000006654	SNRNP200	100	89.841	Heterocephalus_glaber_female
ENSCSEG00000016399	snrnp200	100	89.841	ENSHGLG00100018594	SNRNP200	100	89.841	Heterocephalus_glaber_male
ENSCSEG00000016399	snrnp200	100	89.934	ENSSTOG00000016351	SNRNP200	100	89.934	Ictidomys_tridecemlineatus
ENSCSEG00000016399	snrnp200	100	89.654	ENSJJAG00000023659	Snrnp200	100	89.654	Jaculus_jaculus
ENSCSEG00000016399	snrnp200	100	94.860	ENSKMAG00000003665	snrnp200	99	94.860	Kryptolebias_marmoratus
ENSCSEG00000016399	snrnp200	100	96.111	ENSLBEG00000021585	snrnp200	99	96.111	Labrus_bergylta
ENSCSEG00000016399	snrnp200	82	91.738	ENSLACG00000000226	SNRNP200	99	91.738	Latimeria_chalumnae
ENSCSEG00000016399	snrnp200	100	93.446	ENSLOCG00000015198	snrnp200	99	93.446	Lepisosteus_oculatus
ENSCSEG00000016399	snrnp200	100	89.841	ENSLAFG00000015626	SNRNP200	100	89.841	Loxodonta_africana
ENSCSEG00000016399	snrnp200	100	89.841	ENSMFAG00000040174	SNRNP200	99	91.279	Macaca_fascicularis
ENSCSEG00000016399	snrnp200	100	89.841	ENSMMUG00000023261	SNRNP200	100	89.841	Macaca_mulatta
ENSCSEG00000016399	snrnp200	100	89.794	ENSMNEG00000032398	SNRNP200	100	89.794	Macaca_nemestrina
ENSCSEG00000016399	snrnp200	100	89.888	ENSMLEG00000019083	SNRNP200	99	91.279	Mandrillus_leucophaeus
ENSCSEG00000016399	snrnp200	100	95.831	ENSMAMG00000007851	snrnp200	99	95.831	Mastacembelus_armatus
ENSCSEG00000016399	snrnp200	97	93.212	ENSMZEG00005010787	snrnp200	99	93.212	Maylandia_zebra
ENSCSEG00000016399	snrnp200	97	89.453	ENSMGAG00000001831	SNRNP200	99	89.476	Meleagris_gallopavo
ENSCSEG00000016399	snrnp200	100	89.934	ENSMAUG00000011825	Snrnp200	100	89.934	Mesocricetus_auratus
ENSCSEG00000016399	snrnp200	100	89.934	ENSMICG00000004710	SNRNP200	100	89.934	Microcebus_murinus
ENSCSEG00000016399	snrnp200	100	87.968	ENSMOCG00000011814	Snrnp200	100	87.968	Microtus_ochrogaster
ENSCSEG00000016399	snrnp200	99	94.450	ENSMMOG00000014167	snrnp200	99	94.330	Mola_mola
ENSCSEG00000016399	snrnp200	100	89.981	ENSMODG00000008475	SNRNP200	100	89.981	Monodelphis_domestica
ENSCSEG00000016399	snrnp200	99	96.378	ENSMALG00000001973	snrnp200	99	96.251	Monopterus_albus
ENSCSEG00000016399	snrnp200	100	89.794	MGP_CAROLIEiJ_G0024250	Snrnp200	100	89.794	Mus_caroli
ENSCSEG00000016399	snrnp200	100	89.841	ENSMUSG00000003660	Snrnp200	100	89.841	Mus_musculus
ENSCSEG00000016399	snrnp200	100	89.841	MGP_PahariEiJ_G0025695	Snrnp200	100	89.841	Mus_pahari
ENSCSEG00000016399	snrnp200	100	89.841	MGP_SPRETEiJ_G0025170	Snrnp200	100	91.436	Mus_spretus
ENSCSEG00000016399	snrnp200	100	89.981	ENSMPUG00000008949	SNRNP200	100	89.981	Mustela_putorius_furo
ENSCSEG00000016399	snrnp200	100	86.751	ENSMLUG00000027511	-	100	86.751	Myotis_lucifugus
ENSCSEG00000016399	snrnp200	100	89.528	ENSMLUG00000010493	SNRNP200	100	89.528	Myotis_lucifugus
ENSCSEG00000016399	snrnp200	100	89.888	ENSNGAG00000021993	Snrnp200	100	89.888	Nannospalax_galili
ENSCSEG00000016399	snrnp200	90	95.647	ENSNBRG00000017960	snrnp200	98	95.703	Neolamprologus_brichardi
ENSCSEG00000016399	snrnp200	99	85.635	ENSNLEG00000000025	SNRNP200	100	85.774	Nomascus_leucogenys
ENSCSEG00000016399	snrnp200	100	91.753	ENSMEUG00000010532	SNRNP200	79	90.278	Notamacropus_eugenii
ENSCSEG00000016399	snrnp200	96	88.716	ENSOPRG00000015464	SNRNP200	100	86.564	Ochotona_princeps
ENSCSEG00000016399	snrnp200	100	89.841	ENSODEG00000008366	SNRNP200	100	89.841	Octodon_degus
ENSCSEG00000016399	snrnp200	99	96.002	ENSONIG00000010714	snrnp200	99	95.876	Oreochromis_niloticus
ENSCSEG00000016399	snrnp200	100	89.841	ENSOCUG00000009864	SNRNP200	100	89.841	Oryctolagus_cuniculus
ENSCSEG00000016399	snrnp200	100	94.752	ENSORLG00000012286	snrnp200	100	94.783	Oryzias_latipes
ENSCSEG00000016399	snrnp200	100	94.892	ENSORLG00020004648	snrnp200	100	94.892	Oryzias_latipes_hni
ENSCSEG00000016399	snrnp200	100	94.939	ENSORLG00015019114	snrnp200	100	94.939	Oryzias_latipes_hsok
ENSCSEG00000016399	snrnp200	99	95.061	ENSOMEG00000011834	snrnp200	99	94.939	Oryzias_melastigma
ENSCSEG00000016399	snrnp200	100	89.934	ENSOGAG00000006879	SNRNP200	100	89.934	Otolemur_garnettii
ENSCSEG00000016399	snrnp200	100	89.003	ENSOARG00000013949	SNRNP200	100	89.003	Ovis_aries
ENSCSEG00000016399	snrnp200	100	89.888	ENSPPAG00000041559	SNRNP200	100	89.888	Pan_paniscus
ENSCSEG00000016399	snrnp200	100	89.981	ENSPPRG00000004435	SNRNP200	100	89.981	Panthera_pardus
ENSCSEG00000016399	snrnp200	100	89.607	ENSPTIG00000006380	SNRNP200	100	89.607	Panthera_tigris_altaica
ENSCSEG00000016399	snrnp200	100	89.888	ENSPTRG00000012230	SNRNP200	100	89.888	Pan_troglodytes
ENSCSEG00000016399	snrnp200	100	89.841	ENSPANG00000006017	SNRNP200	100	89.841	Papio_anubis
ENSCSEG00000016399	snrnp200	100	94.005	ENSPKIG00000014762	snrnp200	99	94.006	Paramormyrops_kingsleyae
ENSCSEG00000016399	snrnp200	100	88.816	ENSPSIG00000008580	SNRNP200	100	88.816	Pelodiscus_sinensis
ENSCSEG00000016399	snrnp200	100	89.841	ENSPCIG00000023050	SNRNP200	100	89.841	Phascolarctos_cinereus
ENSCSEG00000016399	snrnp200	100	95.550	ENSPFOG00000015110	snrnp200	99	95.550	Poecilia_formosa
ENSCSEG00000016399	snrnp200	97	95.875	ENSPLAG00000006711	snrnp200	99	95.875	Poecilia_latipinna
ENSCSEG00000016399	snrnp200	97	95.710	ENSPMEG00000021166	snrnp200	99	95.710	Poecilia_mexicana
ENSCSEG00000016399	snrnp200	100	95.736	ENSPREG00000008875	snrnp200	99	95.736	Poecilia_reticulata
ENSCSEG00000016399	snrnp200	100	89.888	ENSPPYG00000012068	SNRNP200	100	89.888	Pongo_abelii
ENSCSEG00000016399	snrnp200	97	92.949	ENSPCAG00000008536	SNRNP200	86	95.745	Procavia_capensis
ENSCSEG00000016399	snrnp200	100	89.888	ENSPCOG00000024608	SNRNP200	100	89.888	Propithecus_coquereli
ENSCSEG00000016399	snrnp200	96	89.969	ENSPVAG00000005860	SNRNP200	92	89.969	Pteropus_vampyrus
ENSCSEG00000016399	snrnp200	99	93.021	ENSPNYG00000017476	snrnp200	99	92.905	Pundamilia_nyererei
ENSCSEG00000016399	snrnp200	100	91.504	ENSPNAG00000010998	snrnp200	99	91.504	Pygocentrus_nattereri
ENSCSEG00000016399	snrnp200	100	89.934	ENSRNOG00000012157	Snrnp200	100	89.934	Rattus_norvegicus
ENSCSEG00000016399	snrnp200	100	89.888	ENSRBIG00000044690	-	100	89.888	Rhinopithecus_bieti
ENSCSEG00000016399	snrnp200	100	89.888	ENSRROG00000037952	-	100	89.888	Rhinopithecus_roxellana
ENSCSEG00000016399	snrnp200	100	89.888	ENSSBOG00000035471	SNRNP200	100	89.888	Saimiri_boliviensis_boliviensis
ENSCSEG00000016399	snrnp200	97	89.647	ENSSHAG00000000758	SNRNP200	99	89.670	Sarcophilus_harrisii
ENSCSEG00000016399	snrnp200	99	94.358	ENSSFOG00015018826	snrnp200	99	94.239	Scleropages_formosus
ENSCSEG00000016399	snrnp200	100	96.532	ENSSMAG00000005463	snrnp200	99	96.532	Scophthalmus_maximus
ENSCSEG00000016399	snrnp200	100	96.767	ENSSDUG00000021410	snrnp200	99	96.767	Seriola_dumerili
ENSCSEG00000016399	snrnp200	100	96.673	ENSSLDG00000010884	snrnp200	99	96.673	Seriola_lalandi_dorsalis
ENSCSEG00000016399	snrnp200	95	87.668	ENSSARG00000010728	SNRNP200	96	87.634	Sorex_araneus
ENSCSEG00000016399	snrnp200	100	90.028	ENSSPUG00000003726	-	100	90.028	Sphenodon_punctatus
ENSCSEG00000016399	snrnp200	100	96.673	ENSSPAG00000001842	snrnp200	99	96.673	Stegastes_partitus
ENSCSEG00000016399	snrnp200	100	89.981	ENSSSCG00000008127	SNRNP200	100	89.981	Sus_scrofa
ENSCSEG00000016399	snrnp200	99	81.147	ENSTGUG00000014475	-	100	81.147	Taeniopygia_guttata
ENSCSEG00000016399	snrnp200	99	95.296	ENSTRUG00000001307	snrnp200	99	95.173	Takifugu_rubripes
ENSCSEG00000016399	snrnp200	100	90.275	ENSTNIG00000004320	snrnp200	100	83.216	Tetraodon_nigroviridis
ENSCSEG00000016399	snrnp200	83	93.427	ENSTBEG00000003329	-	67	93.427	Tupaia_belangeri
ENSCSEG00000016399	snrnp200	100	89.747	ENSTTRG00000004983	SNRNP200	100	89.747	Tursiops_truncatus
ENSCSEG00000016399	snrnp200	75	82.558	ENSUAMG00000008395	-	95	82.558	Ursus_americanus
ENSCSEG00000016399	snrnp200	100	89.981	ENSUMAG00000012385	SNRNP200	100	89.981	Ursus_maritimus
ENSCSEG00000016399	snrnp200	87	94.643	ENSVPAG00000006434	SNRNP200	66	94.643	Vicugna_pacos
ENSCSEG00000016399	snrnp200	100	89.771	ENSVVUG00000026247	SNRNP200	100	89.771	Vulpes_vulpes
ENSCSEG00000016399	snrnp200	100	89.663	ENSXETG00000001243	snrnp200	100	89.663	Xenopus_tropicalis
ENSCSEG00000016399	snrnp200	97	95.874	ENSXMAG00000002058	snrnp200	98	95.874	Xiphophorus_maculatus