EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000016845 (Gene tree)
Gene ID: 103386598
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 2353 bases
Position: chr11:16350527-16352879
Accession: 103386598
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000026357	zf-U1	PF06220.12	1.1e-22	1	1
ENSCSEP00000026366	zf-U1	PF06220.12	8.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000026718	-	1057	-	ENSCSEP00000026366	187 (aa)	-	-
ENSCSET00000026709	-	943	XM_008320943	ENSCSEP00000026357	149 (aa)	XP_008319165	UPI0004975075

Gene Model

Click here to download ENSCSEG00000016845's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016845's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016845	snrpc	100	97.315	ENSAPOG00000013907	snrpc	100	97.315	Acanthochromis_polyacanthus
ENSCSEG00000016845	snrpc	98	93.197	ENSACIG00000010867	snrpc	100	93.197	Amphilophus_citrinellus
ENSCSEG00000016845	snrpc	100	97.315	ENSAOCG00000021151	snrpc	100	97.315	Amphiprion_ocellaris
ENSCSEG00000016845	snrpc	100	97.315	ENSAPEG00000023221	snrpc	100	97.315	Amphiprion_percula
ENSCSEG00000016845	snrpc	100	97.315	ENSATEG00000025133	snrpc	100	97.315	Anabas_testudineus
ENSCSEG00000016845	snrpc	100	95.973	ENSCVAG00000014297	snrpc	100	95.973	Cyprinodon_variegatus
ENSCSEG00000016845	snrpc	100	78.750	ENSDARG00000009871	snrpc	99	82.166	Danio_rerio
ENSCSEG00000016845	snrpc	99	96.599	ENSGMOG00000000090	snrpc	100	97.279	Gadus_morhua
ENSCSEG00000016845	snrpc	100	95.973	ENSGAFG00000016115	snrpc	100	95.973	Gambusia_affinis
ENSCSEG00000016845	snrpc	99	96.599	ENSGACG00000004899	snrpc	98	97.279	Gasterosteus_aculeatus
ENSCSEG00000016845	snrpc	100	95.973	ENSHCOG00000001596	snrpc	100	83.893	Hippocampus_comes
ENSCSEG00000016845	snrpc	100	93.960	ENSKMAG00000016356	snrpc	100	91.946	Kryptolebias_marmoratus
ENSCSEG00000016845	snrpc	100	96.667	ENSLBEG00000023881	snrpc	100	96.667	Labrus_bergylta
ENSCSEG00000016845	snrpc	100	74.000	ENSMMUG00000039415	-	99	74.324	Macaca_mulatta
ENSCSEG00000016845	snrpc	100	96.644	ENSMAMG00000003857	snrpc	100	96.644	Mastacembelus_armatus
ENSCSEG00000016845	snrpc	98	95.890	ENSMMOG00000013149	snrpc	100	95.890	Mola_mola
ENSCSEG00000016845	snrpc	100	97.315	ENSMALG00000001197	snrpc	100	97.315	Monopterus_albus
ENSCSEG00000016845	snrpc	89	63.158	ENSOANG00000003405	SNRPC	99	66.438	Ornithorhynchus_anatinus
ENSCSEG00000016845	snrpc	96	66.667	ENSOGAG00000028405	-	98	66.000	Otolemur_garnettii
ENSCSEG00000016845	snrpc	98	95.890	ENSPMGG00000022162	snrpc	100	95.890	Periophthalmus_magnuspinnatus
ENSCSEG00000016845	snrpc	100	95.973	ENSPFOG00000015174	snrpc	100	95.973	Poecilia_formosa
ENSCSEG00000016845	snrpc	100	95.973	ENSPLAG00000012311	snrpc	100	95.973	Poecilia_latipinna
ENSCSEG00000016845	snrpc	100	95.973	ENSPMEG00000010274	snrpc	100	95.973	Poecilia_mexicana
ENSCSEG00000016845	snrpc	99	81.208	ENSPREG00000013017	snrpc	81	81.879	Poecilia_reticulata
ENSCSEG00000016845	snrpc	98	82.313	ENSPNYG00000004900	snrpc	100	82.313	Pundamilia_nyererei
ENSCSEG00000016845	snrpc	100	85.535	ENSPNAG00000012799	snrpc	100	84.177	Pygocentrus_nattereri
ENSCSEG00000016845	snrpc	100	97.315	ENSSMAG00000008029	snrpc	100	97.315	Scophthalmus_maximus
ENSCSEG00000016845	snrpc	100	97.315	ENSSDUG00000018895	snrpc	100	80.874	Seriola_dumerili
ENSCSEG00000016845	snrpc	100	97.315	ENSSLDG00000005034	snrpc	100	97.315	Seriola_lalandi_dorsalis
ENSCSEG00000016845	snrpc	100	97.315	ENSSPAG00000000914	snrpc	100	97.315	Stegastes_partitus
ENSCSEG00000016845	snrpc	100	94.631	ENSTRUG00000021651	snrpc	100	94.631	Takifugu_rubripes
ENSCSEG00000016845	snrpc	100	85.093	ENSTNIG00000018307	snrpc	99	81.761	Tetraodon_nigroviridis
ENSCSEG00000016845	snrpc	98	93.151	ENSXCOG00000015871	-	100	93.151	Xiphophorus_couchianus
ENSCSEG00000016845	snrpc	100	95.973	ENSXMAG00000017935	snrpc	100	95.973	Xiphophorus_maculatus