EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016976 (Gene tree)
Gene ID: 103381942
Gene Symbol: -
Alias: -
Full Name: GTP-binding protein SAR1b
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 4367 bases
Position: chr8:8988234-8992600
Accession: 103381942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000026581	MMR_HSR1	PF01926.23	9.7e-06	1	1
ENSCSEP00000026574	MMR_HSR1	PF01926.23	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000026927	-	2561	-	ENSCSEP00000026574	212 (aa)	-	-
ENSCSET00000026934	-	1860	XM_008314558	ENSCSEP00000026581	198 (aa)	XP_008312780	UPI000497A45B

Gene Model

Click here to download ENSCSEG00000016976's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016976's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016976	-	92	32.432	ENSCSEG00000006004	arf5	94	32.432
ENSCSEG00000016976	-	100	80.303	ENSCSEG00000015238	sar1b	98	79.602
ENSCSEG00000016976	-	59	33.333	ENSCSEG00000003442	arl5a	71	33.333
ENSCSEG00000016976	-	60	36.290	ENSCSEG00000000838	arl4cb	57	36.290
ENSCSEG00000016976	-	88	30.286	ENSCSEG00000003101	arf3b	90	30.286
ENSCSEG00000016976	-	73	37.500	ENSCSEG00000016811	arl2	78	37.500
ENSCSEG00000016976	-	58	35.294	ENSCSEG00000014890	arl4aa	61	35.294
ENSCSEG00000016976	-	66	35.766	ENSCSEG00000005387	-	69	35.766
ENSCSEG00000016976	-	61	34.921	ENSCSEG00000010194	-	62	34.921
ENSCSEG00000016976	-	73	33.793	ENSCSEG00000018609	arl8a	77	33.793
ENSCSEG00000016976	-	94	31.053	ENSCSEG00000005784	ARL6	96	31.053
ENSCSEG00000016976	-	94	30.108	ENSCSEG00000007217	-	96	30.108
ENSCSEG00000016976	-	97	30.928	ENSCSEG00000021772	arl8ba	93	30.928
ENSCSEG00000016976	-	53	37.383	ENSCSEG00000013136	-	58	37.383
ENSCSEG00000016976	-	95	30.159	ENSCSEG00000010824	arl3l2	95	30.159
ENSCSEG00000016976	-	86	32.022	ENSCSEG00000012307	-	82	32.022
ENSCSEG00000016976	-	58	35.294	ENSCSEG00000007479	ARL4A	60	35.294
ENSCSEG00000016976	-	85	34.706	ENSCSEG00000017926	-	78	34.706
ENSCSEG00000016976	-	97	30.412	ENSCSEG00000014248	-	82	30.412
ENSCSEG00000016976	-	81	30.435	ENSCSEG00000009161	arl11	94	30.435
ENSCSEG00000016976	-	88	30.286	ENSCSEG00000009747	arf2b	90	30.286
ENSCSEG00000016976	-	100	81.818	ENSCSEG00000004825	sar1ab	100	81.818
ENSCSEG00000016976	-	66	36.154	ENSCSEG00000012285	-	73	36.154

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016976	-	100	84.848	ENSAPOG00000007186	sar1b	100	84.848	Acanthochromis_polyacanthus
ENSCSEG00000016976	-	100	94.444	ENSAPOG00000017891	-	100	94.444	Acanthochromis_polyacanthus
ENSCSEG00000016976	-	100	85.859	ENSACIG00000013634	sar1b	100	85.859	Amphilophus_citrinellus
ENSCSEG00000016976	-	100	91.919	ENSACIG00000024513	-	100	91.919	Amphilophus_citrinellus
ENSCSEG00000016976	-	100	84.343	ENSAOCG00000005888	sar1b	100	84.343	Amphiprion_ocellaris
ENSCSEG00000016976	-	100	94.444	ENSAOCG00000002627	-	100	94.444	Amphiprion_ocellaris
ENSCSEG00000016976	-	100	84.343	ENSAPEG00000022771	sar1b	100	84.343	Amphiprion_percula
ENSCSEG00000016976	-	100	94.444	ENSAPEG00000019680	-	100	94.444	Amphiprion_percula
ENSCSEG00000016976	-	100	83.333	ENSATEG00000012904	sar1b	100	83.333	Anabas_testudineus
ENSCSEG00000016976	-	100	90.404	ENSATEG00000023368	-	100	90.404	Anabas_testudineus
ENSCSEG00000016976	-	100	83.333	ENSACAG00000001470	-	100	83.333	Anolis_carolinensis
ENSCSEG00000016976	-	100	85.354	ENSACLG00000014649	sar1b	100	85.354	Astatotilapia_calliptera
ENSCSEG00000016976	-	100	92.424	ENSACLG00000005011	-	100	92.424	Astatotilapia_calliptera
ENSCSEG00000016976	-	59	90.598	ENSAMXG00000018108	sar1b	84	90.598	Astyanax_mexicanus
ENSCSEG00000016976	-	100	89.394	ENSAMXG00000034192	-	95	85.990	Astyanax_mexicanus
ENSCSEG00000016976	-	100	86.364	ENSCVAG00000022959	sar1b	100	86.364	Cyprinodon_variegatus
ENSCSEG00000016976	-	100	85.859	ENSDARG00000103403	sar1b	100	85.859	Danio_rerio
ENSCSEG00000016976	-	99	69.388	FBgn0038947	Sar1	99	69.388	Drosophila_melanogaster
ENSCSEG00000016976	-	98	78.866	ENSEBUG00000011723	sar1b	98	78.866	Eptatretus_burgeri
ENSCSEG00000016976	-	100	86.869	ENSELUG00000020912	sar1b	100	86.869	Esox_lucius
ENSCSEG00000016976	-	100	84.848	ENSFHEG00000019865	sar1b	100	84.848	Fundulus_heteroclitus
ENSCSEG00000016976	-	100	84.848	ENSGMOG00000008023	sar1b	100	84.848	Gadus_morhua
ENSCSEG00000016976	-	100	83.838	ENSGAFG00000007081	sar1b	100	83.838	Gambusia_affinis
ENSCSEG00000016976	-	100	82.323	ENSGACG00000001474	sar1b	100	82.323	Gasterosteus_aculeatus
ENSCSEG00000016976	-	100	92.424	ENSHBUG00000018397	-	100	92.424	Haplochromis_burtoni
ENSCSEG00000016976	-	100	85.354	ENSHBUG00000000915	sar1b	100	85.354	Haplochromis_burtoni
ENSCSEG00000016976	-	100	83.838	ENSHCOG00000010953	sar1b	100	83.838	Hippocampus_comes
ENSCSEG00000016976	-	100	84.343	ENSIPUG00000020925	sar1b	100	84.343	Ictalurus_punctatus
ENSCSEG00000016976	-	100	86.869	ENSIPUG00000010046	sar1b	100	86.869	Ictalurus_punctatus
ENSCSEG00000016976	-	100	89.899	ENSKMAG00000014875	-	100	89.899	Kryptolebias_marmoratus
ENSCSEG00000016976	-	100	83.333	ENSKMAG00000019693	sar1b	100	83.333	Kryptolebias_marmoratus
ENSCSEG00000016976	-	100	92.424	ENSLBEG00000016945	-	100	92.424	Labrus_bergylta
ENSCSEG00000016976	-	100	81.313	ENSLBEG00000027550	sar1b	100	81.313	Labrus_bergylta
ENSCSEG00000016976	-	100	79.293	ENSLACG00000010795	sar1b	100	79.293	Latimeria_chalumnae
ENSCSEG00000016976	-	100	65.829	ENSLACG00000017029	-	100	65.829	Latimeria_chalumnae
ENSCSEG00000016976	-	100	86.364	ENSLOCG00000005214	-	100	86.364	Lepisosteus_oculatus
ENSCSEG00000016976	-	100	86.869	ENSLOCG00000010197	sar1b	100	86.869	Lepisosteus_oculatus
ENSCSEG00000016976	-	100	82.828	ENSMAMG00000021732	sar1b	100	82.828	Mastacembelus_armatus
ENSCSEG00000016976	-	100	85.354	ENSMZEG00005008942	sar1b	100	85.354	Maylandia_zebra
ENSCSEG00000016976	-	100	92.424	ENSMZEG00005001012	-	100	92.424	Maylandia_zebra
ENSCSEG00000016976	-	90	84.916	ENSMGAG00000005387	-	91	84.916	Meleagris_gallopavo
ENSCSEG00000016976	-	100	91.919	ENSMMOG00000013803	-	100	91.919	Mola_mola
ENSCSEG00000016976	-	100	83.333	ENSMALG00000016635	sar1b	96	83.425	Monopterus_albus
ENSCSEG00000016976	-	100	92.929	ENSNBRG00000014004	-	100	92.929	Neolamprologus_brichardi
ENSCSEG00000016976	-	100	85.354	ENSNBRG00000008013	sar1b	100	85.354	Neolamprologus_brichardi
ENSCSEG00000016976	-	100	85.354	ENSONIG00000017278	sar1b	100	85.354	Oreochromis_niloticus
ENSCSEG00000016976	-	100	84.343	ENSORLG00000000932	sar1b	100	84.343	Oryzias_latipes
ENSCSEG00000016976	-	100	84.343	ENSORLG00020021985	sar1b	100	84.343	Oryzias_latipes_hni
ENSCSEG00000016976	-	100	84.343	ENSORLG00015007044	sar1b	100	84.343	Oryzias_latipes_hsok
ENSCSEG00000016976	-	100	83.333	ENSOMEG00000001052	sar1b	100	83.333	Oryzias_melastigma
ENSCSEG00000016976	-	100	86.364	ENSPKIG00000017353	-	100	86.364	Paramormyrops_kingsleyae
ENSCSEG00000016976	-	100	83.333	ENSPKIG00000010688	sar1b	100	83.333	Paramormyrops_kingsleyae
ENSCSEG00000016976	-	59	87.931	ENSPMGG00000001234	sar1b	91	87.931	Periophthalmus_magnuspinnatus
ENSCSEG00000016976	-	100	78.607	ENSPMAG00000003593	sar1b	100	78.607	Petromyzon_marinus
ENSCSEG00000016976	-	100	83.333	ENSPFOG00000005666	sar1b	100	83.333	Poecilia_formosa
ENSCSEG00000016976	-	100	83.838	ENSPLAG00000012223	sar1b	100	83.838	Poecilia_latipinna
ENSCSEG00000016976	-	61	90.833	ENSPLAG00000001016	-	77	90.833	Poecilia_latipinna
ENSCSEG00000016976	-	100	83.333	ENSPMEG00000016831	sar1b	100	83.333	Poecilia_mexicana
ENSCSEG00000016976	-	100	83.333	ENSPREG00000005312	sar1b	91	83.417	Poecilia_reticulata
ENSCSEG00000016976	-	60	91.525	ENSPREG00000002020	-	87	91.525	Poecilia_reticulata
ENSCSEG00000016976	-	100	85.354	ENSPNYG00000012440	sar1b	100	85.354	Pundamilia_nyererei
ENSCSEG00000016976	-	100	91.919	ENSPNYG00000021357	-	100	91.919	Pundamilia_nyererei
ENSCSEG00000016976	-	100	89.899	ENSPNAG00000001123	-	100	89.899	Pygocentrus_nattereri
ENSCSEG00000016976	-	100	86.364	ENSPNAG00000014683	sar1b	100	86.364	Pygocentrus_nattereri
ENSCSEG00000016976	-	100	86.364	ENSSFOG00015020051	sar1b	100	86.364	Scleropages_formosus
ENSCSEG00000016976	-	100	85.354	ENSSFOG00015018128	-	100	85.354	Scleropages_formosus
ENSCSEG00000016976	-	100	82.323	ENSSMAG00000007106	sar1b	80	82.412	Scophthalmus_maximus
ENSCSEG00000016976	-	100	92.929	ENSSMAG00000002165	-	100	92.929	Scophthalmus_maximus
ENSCSEG00000016976	-	100	84.343	ENSSDUG00000020926	sar1b	100	84.343	Seriola_dumerili
ENSCSEG00000016976	-	100	92.929	ENSSDUG00000019629	-	100	92.929	Seriola_dumerili
ENSCSEG00000016976	-	100	92.929	ENSSLDG00000024197	-	100	92.929	Seriola_lalandi_dorsalis
ENSCSEG00000016976	-	100	84.343	ENSSLDG00000017052	sar1b	94	90.741	Seriola_lalandi_dorsalis
ENSCSEG00000016976	-	100	82.828	ENSSPUG00000010247	-	100	82.828	Sphenodon_punctatus
ENSCSEG00000016976	-	100	84.848	ENSSPAG00000017634	sar1b	100	84.848	Stegastes_partitus
ENSCSEG00000016976	-	100	93.434	ENSSPAG00000015626	-	100	93.434	Stegastes_partitus
ENSCSEG00000016976	-	100	80.808	ENSTRUG00000023908	sar1b	100	80.808	Takifugu_rubripes
ENSCSEG00000016976	-	100	82.323	ENSTNIG00000016097	sar1b	100	82.323	Tetraodon_nigroviridis
ENSCSEG00000016976	-	90	84.270	ENSXCOG00000004160	sar1b	87	84.270	Xiphophorus_couchianus
ENSCSEG00000016976	-	59	90.598	ENSXCOG00000006154	-	79	90.598	Xiphophorus_couchianus
ENSCSEG00000016976	-	100	83.838	ENSXMAG00000008294	sar1b	100	83.838	Xiphophorus_maculatus