EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000016984 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 4556 bases
Position: chr16:16699447-16704002
Accession: 103392425
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000026589	KH_1	PF00013.29	6e-48	1	3
ENSCSEP00000026589	KH_1	PF00013.29	6e-48	2	3
ENSCSEP00000026589	KH_1	PF00013.29	6e-48	3	3
ENSCSEP00000026596	KH_1	PF00013.29	2.5e-34	1	2
ENSCSEP00000026596	KH_1	PF00013.29	2.5e-34	2	2
ENSCSEP00000026596	KH_2	PF07650.17	5.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000026949	-	997	XM_008329030	ENSCSEP00000026596	251 (aa)	XP_008327252	-
ENSCSET00000026942	-	1020	-	ENSCSEP00000026589	339 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000016984's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000016984's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000016984	-	91	32.479	ENSCSEG00000011718	igf2bp2b	56	37.410
ENSCSEG00000016984	-	97	64.350	ENSCSEG00000021490	pcbp2	98	64.350
ENSCSEG00000016984	-	64	35.897	ENSCSEG00000021412	fubp1	50	39.062
ENSCSEG00000016984	-	97	78.659	ENSCSEG00000000822	pcbp3	99	78.659
ENSCSEG00000016984	-	86	38.333	ENSCSEG00000001024	hnrpkl	64	38.333
ENSCSEG00000016984	-	91	30.328	ENSCSEG00000013968	igf2bp1	58	30.657
ENSCSEG00000016984	-	97	65.976	ENSCSEG00000010540	PCBP2	91	79.679
ENSCSEG00000016984	-	98	61.671	ENSCSEG00000010020	zgc:110045	87	71.845
ENSCSEG00000016984	-	76	38.710	ENSCSEG00000011661	-	56	38.710
ENSCSEG00000016984	-	66	47.945	ENSCSEG00000012457	hnrnpk	58	47.945
ENSCSEG00000016984	-	95	55.856	ENSCSEG00000014487	pcbp4	65	55.856
ENSCSEG00000016984	-	63	42.647	ENSCSEG00000011429	khsrp	55	42.647
ENSCSEG00000016984	-	95	51.304	ENSCSEG00000021041	PCBP4	72	51.304
ENSCSEG00000016984	-	62	39.655	ENSCSEG00000005887	NOVA1	89	39.655
ENSCSEG00000016984	-	57	30.201	ENSCSEG00000008761	-	55	30.201

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000016984	-	100	78.571	ENSAPOG00000016582	-	100	78.571	Acanthochromis_polyacanthus
ENSCSEG00000016984	-	99	78.402	ENSAPOG00000020003	pcbp3	89	78.402	Acanthochromis_polyacanthus
ENSCSEG00000016984	-	98	76.068	ENSAMEG00000001697	-	99	74.510	Ailuropoda_melanoleuca
ENSCSEG00000016984	-	100	78.063	ENSACIG00000002739	-	100	78.063	Amphilophus_citrinellus
ENSCSEG00000016984	-	97	75.758	ENSACIG00000010933	pcbp3	96	90.722	Amphilophus_citrinellus
ENSCSEG00000016984	-	94	81.013	ENSAOCG00000008592	-	97	81.013	Amphiprion_ocellaris
ENSCSEG00000016984	-	91	79.100	ENSAOCG00000007806	-	100	79.100	Amphiprion_ocellaris
ENSCSEG00000016984	-	100	79.420	ENSAPEG00000005209	-	100	79.420	Amphiprion_percula
ENSCSEG00000016984	-	97	74.906	ENSAPEG00000008011	pcbp3	95	72.500	Amphiprion_percula
ENSCSEG00000016984	-	100	80.409	ENSATEG00000009833	-	100	80.409	Anabas_testudineus
ENSCSEG00000016984	-	97	74.644	ENSATEG00000015787	-	100	74.644	Anabas_testudineus
ENSCSEG00000016984	-	98	76.590	ENSAPLG00000002975	-	98	76.590	Anas_platyrhynchos
ENSCSEG00000016984	-	75	89.840	ENSAPLG00000008951	-	79	67.308	Anas_platyrhynchos
ENSCSEG00000016984	-	95	73.967	ENSACAG00000009819	-	98	67.760	Anolis_carolinensis
ENSCSEG00000016984	-	98	73.098	ENSACAG00000004607	-	77	95.187	Anolis_carolinensis
ENSCSEG00000016984	-	71	94.595	ENSANAG00000030702	-	91	94.318	Aotus_nancymaae
ENSCSEG00000016984	-	100	80.531	ENSACLG00000003801	-	100	80.531	Astatotilapia_calliptera
ENSCSEG00000016984	-	97	74.532	ENSACLG00000011835	pcbp3	95	72.222	Astatotilapia_calliptera
ENSCSEG00000016984	-	95	61.818	ENSAMXG00000001760	zgc:110045	72	61.818	Astyanax_mexicanus
ENSCSEG00000016984	-	97	78.182	ENSAMXG00000013588	-	100	78.182	Astyanax_mexicanus
ENSCSEG00000016984	-	77	95.361	ENSAMXG00000003440	pcbp3	73	95.361	Astyanax_mexicanus
ENSCSEG00000016984	-	91	80.702	ENSCAFG00020019472	-	73	88.725	Canis_lupus_dingo
ENSCSEG00000016984	-	98	77.647	ENSCSAG00000007440	-	89	77.647	Chlorocebus_sabaeus
ENSCSEG00000016984	-	98	77.971	ENSCPBG00000012151	-	99	77.971	Chrysemys_picta_bellii
ENSCSEG00000016984	-	95	74.583	ENSCPBG00000000733	-	65	89.840	Chrysemys_picta_bellii
ENSCSEG00000016984	-	100	79.130	ENSCVAG00000005262	-	100	79.130	Cyprinodon_variegatus
ENSCSEG00000016984	-	97	74.812	ENSCVAG00000014482	pcbp3	95	72.222	Cyprinodon_variegatus
ENSCSEG00000016984	-	100	74.054	ENSDARG00000054378	pcbp3	80	95.876	Danio_rerio
ENSCSEG00000016984	-	98	67.941	ENSETEG00000015988	-	98	67.941	Echinops_telfairi
ENSCSEG00000016984	-	90	60.390	ENSEBUG00000016192	pcbp3	99	60.390	Eptatretus_burgeri
ENSCSEG00000016984	-	94	70.248	ENSEBUG00000007485	-	86	79.024	Eptatretus_burgeri
ENSCSEG00000016984	-	92	60.081	ENSEBUG00000005495	pcbp3	58	72.821	Eptatretus_burgeri
ENSCSEG00000016984	-	94	81.013	ENSELUG00000001560	-	99	73.151	Esox_lucius
ENSCSEG00000016984	-	98	74.777	ENSELUG00000003521	pcbp3	98	74.777	Esox_lucius
ENSCSEG00000016984	-	98	77.485	ENSFALG00000003949	-	98	77.485	Ficedula_albicollis
ENSCSEG00000016984	-	75	89.840	ENSFALG00000004411	-	74	67.308	Ficedula_albicollis
ENSCSEG00000016984	-	100	79.420	ENSFHEG00000006539	-	100	79.420	Fundulus_heteroclitus
ENSCSEG00000016984	-	98	79.456	ENSFHEG00000016615	pcbp3	96	79.456	Fundulus_heteroclitus
ENSCSEG00000016984	-	97	69.527	ENSGMOG00000011992	pcbp3	97	69.527	Gadus_morhua
ENSCSEG00000016984	-	96	59.420	ENSGMOG00000008611	-	100	59.420	Gadus_morhua
ENSCSEG00000016984	-	95	75.000	ENSGALG00000013155	-	99	68.272	Gallus_gallus
ENSCSEG00000016984	-	98	73.407	ENSGALG00000004394	-	99	87.027	Gallus_gallus
ENSCSEG00000016984	-	98	71.745	ENSGAFG00000011430	pcbp3	97	71.745	Gambusia_affinis
ENSCSEG00000016984	-	94	82.128	ENSGAFG00000010274	-	95	78.338	Gambusia_affinis
ENSCSEG00000016984	-	100	78.711	ENSGACG00000002266	-	100	78.711	Gasterosteus_aculeatus
ENSCSEG00000016984	-	100	68.108	ENSGACG00000014955	-	100	68.108	Gasterosteus_aculeatus
ENSCSEG00000016984	-	88	73.604	ENSGAGG00000000271	-	100	71.622	Gopherus_agassizii
ENSCSEG00000016984	-	75	85.185	ENSGAGG00000006956	-	88	77.465	Gopherus_agassizii
ENSCSEG00000016984	-	100	80.531	ENSHBUG00000021782	-	100	80.531	Haplochromis_burtoni
ENSCSEG00000016984	-	97	77.381	ENSHBUG00000010697	pcbp3	98	77.381	Haplochromis_burtoni
ENSCSEG00000016984	-	94	81.435	ENSHCOG00000006067	-	100	74.640	Hippocampus_comes
ENSCSEG00000016984	-	99	77.559	ENSHCOG00000017868	pcbp3	95	72.222	Hippocampus_comes
ENSCSEG00000016984	-	100	79.941	ENSIPUG00000006238	pcbp3	100	79.941	Ictalurus_punctatus
ENSCSEG00000016984	-	97	76.036	ENSKMAG00000003046	pcbp3	95	72.222	Kryptolebias_marmoratus
ENSCSEG00000016984	-	100	76.744	ENSKMAG00000018530	-	100	76.744	Kryptolebias_marmoratus
ENSCSEG00000016984	-	100	69.477	ENSLBEG00000006542	-	100	70.058	Labrus_bergylta
ENSCSEG00000016984	-	99	77.876	ENSLBEG00000006201	pcbp3	98	77.876	Labrus_bergylta
ENSCSEG00000016984	-	75	88.235	ENSLACG00000010804	zgc:110045	74	66.017	Latimeria_chalumnae
ENSCSEG00000016984	-	75	95.187	ENSLACG00000010386	pcbp3	52	95.187	Latimeria_chalumnae
ENSCSEG00000016984	-	98	77.681	ENSLOCG00000009369	pcbp3	99	77.681	Lepisosteus_oculatus
ENSCSEG00000016984	-	75	89.840	ENSLOCG00000005058	zgc:110045	77	70.238	Lepisosteus_oculatus
ENSCSEG00000016984	-	100	79.240	ENSMAMG00000011620	-	100	79.240	Mastacembelus_armatus
ENSCSEG00000016984	-	97	79.573	ENSMAMG00000022336	pcbp3	93	79.573	Mastacembelus_armatus
ENSCSEG00000016984	-	99	74.016	ENSMZEG00005008993	pcbp3	94	80.435	Maylandia_zebra
ENSCSEG00000016984	-	100	77.193	ENSMZEG00005014882	-	100	76.000	Maylandia_zebra
ENSCSEG00000016984	-	95	65.840	ENSMGAG00000001883	-	95	66.667	Meleagris_gallopavo
ENSCSEG00000016984	-	75	89.840	ENSMGAG00000006794	-	74	67.036	Meleagris_gallopavo
ENSCSEG00000016984	-	97	75.740	ENSMMOG00000000730	pcbp3	88	75.740	Mola_mola
ENSCSEG00000016984	-	100	80.236	ENSMMOG00000005216	-	100	80.236	Mola_mola
ENSCSEG00000016984	-	80	61.233	ENSMODG00000027884	-	93	61.233	Monodelphis_domestica
ENSCSEG00000016984	-	97	73.373	ENSMALG00000000691	pcbp3	93	91.892	Monopterus_albus
ENSCSEG00000016984	-	98	74.493	ENSMPUG00000001779	-	90	74.493	Mustela_putorius_furo
ENSCSEG00000016984	-	97	77.204	ENSNBRG00000016714	-	97	83.636	Neolamprologus_brichardi
ENSCSEG00000016984	-	97	73.864	ENSNBRG00000016409	-	95	73.864	Neolamprologus_brichardi
ENSCSEG00000016984	-	94	71.875	ENSOPRG00000003431	-	99	71.875	Ochotona_princeps
ENSCSEG00000016984	-	99	77.165	ENSONIG00000012122	-	98	72.702	Oreochromis_niloticus
ENSCSEG00000016984	-	100	78.674	ENSONIG00000004611	-	100	78.674	Oreochromis_niloticus
ENSCSEG00000016984	-	98	77.485	ENSOCUG00000002696	-	89	77.485	Oryctolagus_cuniculus
ENSCSEG00000016984	-	100	78.674	ENSORLG00000022739	-	100	78.674	Oryzias_latipes
ENSCSEG00000016984	-	94	81.013	ENSORLG00000000059	pcbp3	100	77.976	Oryzias_latipes
ENSCSEG00000016984	-	100	80.236	ENSORLG00020006124	-	100	80.236	Oryzias_latipes_hni
ENSCSEG00000016984	-	99	77.101	ENSORLG00020012671	pcbp3	99	77.101	Oryzias_latipes_hni
ENSCSEG00000016984	-	99	77.101	ENSORLG00015000429	pcbp3	99	77.101	Oryzias_latipes_hsok
ENSCSEG00000016984	-	99	77.326	ENSORLG00015008051	-	97	77.326	Oryzias_latipes_hsok
ENSCSEG00000016984	-	100	80.236	ENSOMEG00000020162	-	100	80.236	Oryzias_melastigma
ENSCSEG00000016984	-	92	77.316	ENSOMEG00000020811	pcbp3	98	77.316	Oryzias_melastigma
ENSCSEG00000016984	-	98	72.826	ENSOGAG00000008044	-	99	72.826	Otolemur_garnettii
ENSCSEG00000016984	-	100	78.886	ENSPKIG00000019329	pcbp3	100	78.886	Paramormyrops_kingsleyae
ENSCSEG00000016984	-	74	83.871	ENSPKIG00000020913	-	87	79.803	Paramormyrops_kingsleyae
ENSCSEG00000016984	-	90	67.925	ENSPSIG00000008350	-	68	63.636	Pelodiscus_sinensis
ENSCSEG00000016984	-	98	69.565	ENSPSIG00000014970	-	98	70.145	Pelodiscus_sinensis
ENSCSEG00000016984	-	77	95.361	ENSPMGG00000022383	pcbp3	72	95.361	Periophthalmus_magnuspinnatus
ENSCSEG00000016984	-	95	60.778	ENSPMAG00000004551	pcbp3	88	60.778	Petromyzon_marinus
ENSCSEG00000016984	-	75	87.701	ENSPMAG00000004637	-	97	87.701	Petromyzon_marinus
ENSCSEG00000016984	-	98	73.278	ENSPCIG00000028092	-	97	85.321	Phascolarctos_cinereus
ENSCSEG00000016984	-	99	81.121	ENSPLAG00000004074	-	92	81.121	Poecilia_latipinna
ENSCSEG00000016984	-	98	72.346	ENSPLAG00000011449	pcbp3	89	72.346	Poecilia_latipinna
ENSCSEG00000016984	-	98	73.099	ENSPMEG00000021239	pcbp3	92	82.547	Poecilia_mexicana
ENSCSEG00000016984	-	99	78.348	ENSPMEG00000006653	-	99	78.632	Poecilia_mexicana
ENSCSEG00000016984	-	100	80.531	ENSPREG00000020585	-	94	90.431	Poecilia_reticulata
ENSCSEG00000016984	-	97	77.879	ENSPREG00000015736	pcbp3	99	77.879	Poecilia_reticulata
ENSCSEG00000016984	-	100	80.531	ENSPNYG00000013205	-	100	80.531	Pundamilia_nyererei
ENSCSEG00000016984	-	97	77.679	ENSPNYG00000012326	pcbp3	95	77.679	Pundamilia_nyererei
ENSCSEG00000016984	-	96	77.914	ENSPNAG00000008541	-	98	77.914	Pygocentrus_nattereri
ENSCSEG00000016984	-	100	78.674	ENSPNAG00000015104	pcbp3	100	78.674	Pygocentrus_nattereri
ENSCSEG00000016984	-	98	77.941	ENSRNOG00000001245	Pcbp3	98	77.941	Rattus_norvegicus
ENSCSEG00000016984	-	98	69.886	ENSRBIG00000028177	-	99	65.092	Rhinopithecus_bieti
ENSCSEG00000016984	-	98	78.235	ENSSHAG00000007890	-	99	78.235	Sarcophilus_harrisii
ENSCSEG00000016984	-	77	93.299	ENSSFOG00015014706	pcbp3	95	72.205	Scleropages_formosus
ENSCSEG00000016984	-	98	71.302	ENSSFOG00015007118	-	95	71.302	Scleropages_formosus
ENSCSEG00000016984	-	94	82.128	ENSSFOG00015010205	pcbp3	100	73.130	Scleropages_formosus
ENSCSEG00000016984	-	100	79.360	ENSSMAG00000003135	-	100	79.360	Scophthalmus_maximus
ENSCSEG00000016984	-	97	79.878	ENSSMAG00000011929	pcbp3	97	79.878	Scophthalmus_maximus
ENSCSEG00000016984	-	97	74.074	ENSSDUG00000011608	pcbp3	99	74.074	Seriola_dumerili
ENSCSEG00000016984	-	96	78.367	ENSSDUG00000008502	-	92	86.730	Seriola_dumerili
ENSCSEG00000016984	-	94	82.553	ENSSLDG00000020161	-	95	78.635	Seriola_lalandi_dorsalis
ENSCSEG00000016984	-	97	74.074	ENSSLDG00000008518	pcbp3	99	74.074	Seriola_lalandi_dorsalis
ENSCSEG00000016984	-	92	71.429	ENSSPUG00000013214	-	88	84.293	Sphenodon_punctatus
ENSCSEG00000016984	-	91	79.421	ENSSPAG00000004190	-	100	79.421	Stegastes_partitus
ENSCSEG00000016984	-	97	63.988	ENSSPAG00000023341	-	95	64.012	Stegastes_partitus
ENSCSEG00000016984	-	98	75.362	ENSTGUG00000003316	-	99	75.362	Taeniopygia_guttata
ENSCSEG00000016984	-	98	72.012	ENSTGUG00000008158	-	99	72.012	Taeniopygia_guttata
ENSCSEG00000016984	-	93	80.255	ENSTRUG00000006280	-	92	80.255	Takifugu_rubripes
ENSCSEG00000016984	-	77	95.876	ENSTRUG00000013604	pcbp3	85	95.876	Takifugu_rubripes
ENSCSEG00000016984	-	98	72.727	ENSTTRG00000015075	-	99	72.727	Tursiops_truncatus
ENSCSEG00000016984	-	71	90.173	ENSXETG00000010491	pcbp2	72	66.471	Xenopus_tropicalis
ENSCSEG00000016984	-	98	75.652	ENSXETG00000011483	pcbp1	99	75.652	Xenopus_tropicalis
ENSCSEG00000016984	-	94	75.862	ENSXCOG00000020481	pcbp3	95	72.022	Xiphophorus_couchianus
ENSCSEG00000016984	-	94	82.128	ENSXMAG00000028711	-	100	76.389	Xiphophorus_maculatus
ENSCSEG00000016984	-	97	74.906	ENSXMAG00000008175	pcbp3	95	72.500	Xiphophorus_maculatus