EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000017239 (Gene tree)
Gene ID: 103398864
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 8399 bases
Position: chrKI934292.1:26554-34952
Accession: 103398864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000027006	UPF1_Zn_bind	PF09416.10	3.4e-75	1	1
ENSCSEP00000027006	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000027368	-	3228	XM_008337612	ENSCSEP00000027006	1075 (aa)	XP_008335834	-

Gene Model

Click here to download ENSCSEG00000017239's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000017239's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000017239	upf1	100	87.909	ENSCSEG00000016159	-	100	87.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000017239	upf1	100	86.262	ENSG00000005007	UPF1	100	86.173	Homo_sapiens
ENSCSEG00000017239	upf1	100	87.884	ENSAPOG00000010916	-	100	88.123	Acanthochromis_polyacanthus
ENSCSEG00000017239	upf1	100	91.133	ENSAPOG00000023773	upf1	100	91.316	Acanthochromis_polyacanthus
ENSCSEG00000017239	upf1	100	85.626	ENSAMEG00000011474	UPF1	100	85.537	Ailuropoda_melanoleuca
ENSCSEG00000017239	upf1	100	90.537	ENSACIG00000019949	upf1	100	90.537	Amphilophus_citrinellus
ENSCSEG00000017239	upf1	93	87.209	ENSACIG00000010985	-	99	87.805	Amphilophus_citrinellus
ENSCSEG00000017239	upf1	100	90.634	ENSAOCG00000018519	upf1	100	90.817	Amphiprion_ocellaris
ENSCSEG00000017239	upf1	100	87.975	ENSAOCG00000006352	-	100	88.214	Amphiprion_ocellaris
ENSCSEG00000017239	upf1	100	87.975	ENSAPEG00000006292	-	100	88.214	Amphiprion_percula
ENSCSEG00000017239	upf1	100	90.634	ENSAPEG00000016344	upf1	100	90.817	Amphiprion_percula
ENSCSEG00000017239	upf1	100	89.705	ENSATEG00000017867	upf1	100	89.257	Anabas_testudineus
ENSCSEG00000017239	upf1	100	87.884	ENSATEG00000016606	-	100	88.123	Anabas_testudineus
ENSCSEG00000017239	upf1	95	87.595	ENSAPLG00000009175	UPF1	100	87.311	Anas_platyrhynchos
ENSCSEG00000017239	upf1	95	85.311	ENSANAG00000024107	UPF1	96	85.122	Aotus_nancymaae
ENSCSEG00000017239	upf1	100	90.628	ENSACLG00000007181	upf1	100	90.628	Astatotilapia_calliptera
ENSCSEG00000017239	upf1	100	87.873	ENSACLG00000022630	-	100	88.033	Astatotilapia_calliptera
ENSCSEG00000017239	upf1	100	88.018	ENSAMXG00000042187	upf1	100	88.657	Astyanax_mexicanus
ENSCSEG00000017239	upf1	100	85.651	ENSBTAG00000020922	UPF1	100	85.562	Bos_taurus
ENSCSEG00000017239	upf1	88	49.335	WBGene00004880	smg-2	95	47.359	Caenorhabditis_elegans
ENSCSEG00000017239	upf1	100	85.424	ENSCJAG00000019627	UPF1	100	85.336	Callithrix_jacchus
ENSCSEG00000017239	upf1	100	85.424	ENSCAFG00000014578	UPF1	100	85.336	Canis_familiaris
ENSCSEG00000017239	upf1	100	86.262	ENSCAFG00020012347	UPF1	100	86.173	Canis_lupus_dingo
ENSCSEG00000017239	upf1	100	86.494	ENSCHIG00000011018	UPF1	100	86.404	Capra_hircus
ENSCSEG00000017239	upf1	95	87.464	ENSTSYG00000008877	UPF1	97	87.417	Carlito_syrichta
ENSCSEG00000017239	upf1	96	86.761	ENSCAPG00000005758	UPF1	96	86.479	Cavia_aperea
ENSCSEG00000017239	upf1	100	86.882	ENSCPOG00000025463	UPF1	100	86.613	Cavia_porcellus
ENSCSEG00000017239	upf1	100	86.262	ENSCCAG00000032175	UPF1	100	86.173	Cebus_capucinus
ENSCSEG00000017239	upf1	94	87.417	ENSCATG00000040306	UPF1	98	87.226	Cercocebus_atys
ENSCSEG00000017239	upf1	95	87.559	ENSCLAG00000004037	UPF1	99	87.369	Chinchilla_lanigera
ENSCSEG00000017239	upf1	100	86.262	ENSCSAG00000005276	UPF1	100	86.173	Chlorocebus_sabaeus
ENSCSEG00000017239	upf1	100	86.637	ENSCPBG00000012513	UPF1	100	86.726	Chrysemys_picta_bellii
ENSCSEG00000017239	upf1	78	75.939	ENSCING00000021399	-	99	76.319	Ciona_intestinalis
ENSCSEG00000017239	upf1	99	69.538	ENSCSAVG00000006533	-	99	69.820	Ciona_savignyi
ENSCSEG00000017239	upf1	94	87.417	ENSCANG00000029819	UPF1	97	87.226	Colobus_angolensis_palliatus
ENSCSEG00000017239	upf1	100	86.470	ENSCGRG00001021067	Upf1	100	86.380	Cricetulus_griseus_chok1gshd
ENSCSEG00000017239	upf1	94	87.226	ENSCGRG00000013480	Upf1	98	86.895	Cricetulus_griseus_crigri
ENSCSEG00000017239	upf1	100	87.783	ENSCVAG00000010561	upf1	100	88.033	Cyprinodon_variegatus
ENSCSEG00000017239	upf1	100	88.475	ENSDARG00000016302	upf1	100	88.566	Danio_rerio
ENSCSEG00000017239	upf1	94	85.048	ENSDORG00000009984	Upf1	95	84.857	Dipodomys_ordii
ENSCSEG00000017239	upf1	85	69.050	FBgn0030354	Upf1	79	69.050	Drosophila_melanogaster
ENSCSEG00000017239	upf1	55	87.252	ENSEBUG00000010069	upf1	96	87.107	Eptatretus_burgeri
ENSCSEG00000017239	upf1	100	86.673	ENSEASG00005006549	UPF1	100	86.583	Equus_asinus_asinus
ENSCSEG00000017239	upf1	100	86.673	ENSECAG00000010639	UPF1	100	86.583	Equus_caballus
ENSCSEG00000017239	upf1	100	87.986	ENSELUG00000020917	upf1	100	88.166	Esox_lucius
ENSCSEG00000017239	upf1	100	87.286	ENSELUG00000012916	-	100	87.376	Esox_lucius
ENSCSEG00000017239	upf1	100	85.424	ENSFCAG00000009757	UPF1	100	85.336	Felis_catus
ENSCSEG00000017239	upf1	95	87.798	ENSFALG00000009312	UPF1	96	87.893	Ficedula_albicollis
ENSCSEG00000017239	upf1	95	87.464	ENSFDAG00000014816	UPF1	99	87.274	Fukomys_damarensis
ENSCSEG00000017239	upf1	86	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSCSEG00000017239	upf1	100	87.242	ENSFHEG00000006428	upf1	100	86.882	Fundulus_heteroclitus
ENSCSEG00000017239	upf1	100	86.745	ENSGMOG00000007541	upf1	100	87.196	Gadus_morhua
ENSCSEG00000017239	upf1	100	86.595	ENSGALG00000003220	UPF1	100	86.506	Gallus_gallus
ENSCSEG00000017239	upf1	64	89.655	ENSGAFG00000015443	-	85	89.655	Gambusia_affinis
ENSCSEG00000017239	upf1	100	88.193	ENSGAFG00000004831	upf1	100	88.171	Gambusia_affinis
ENSCSEG00000017239	upf1	100	86.937	ENSGAGG00000022217	UPF1	100	87.297	Gopherus_agassizii
ENSCSEG00000017239	upf1	95	88.196	ENSGGOG00000002608	UPF1	99	88.004	Gorilla_gorilla
ENSCSEG00000017239	upf1	90	96.154	ENSHBUG00000014694	upf1	100	96.154	Haplochromis_burtoni
ENSCSEG00000017239	upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSCSEG00000017239	upf1	100	85.424	ENSHGLG00000010900	UPF1	100	85.424	Heterocephalus_glaber_female
ENSCSEG00000017239	upf1	94	85.796	ENSHGLG00100005904	UPF1	96	85.565	Heterocephalus_glaber_male
ENSCSEG00000017239	upf1	100	87.772	ENSHCOG00000008918	upf1	100	87.840	Hippocampus_comes
ENSCSEG00000017239	upf1	100	88.929	ENSIPUG00000005108	UPF1	100	89.020	Ictalurus_punctatus
ENSCSEG00000017239	upf1	100	86.351	ENSSTOG00000009196	UPF1	100	86.262	Ictidomys_tridecemlineatus
ENSCSEG00000017239	upf1	100	85.956	ENSJJAG00000023151	Upf1	100	85.867	Jaculus_jaculus
ENSCSEG00000017239	upf1	100	87.523	ENSKMAG00000004962	upf1	100	87.851	Kryptolebias_marmoratus
ENSCSEG00000017239	upf1	100	89.058	ENSLBEG00000014862	upf1	100	89.238	Labrus_bergylta
ENSCSEG00000017239	upf1	100	87.703	ENSLBEG00000027848	-	100	87.862	Labrus_bergylta
ENSCSEG00000017239	upf1	63	84.593	ENSLACG00000008482	UPF1	100	84.549	Latimeria_chalumnae
ENSCSEG00000017239	upf1	100	88.496	ENSLOCG00000002072	upf1	100	88.748	Lepisosteus_oculatus
ENSCSEG00000017239	upf1	100	85.575	ENSLAFG00000014963	UPF1	100	85.487	Loxodonta_africana
ENSCSEG00000017239	upf1	100	86.032	ENSMFAG00000037748	UPF1	100	85.943	Macaca_fascicularis
ENSCSEG00000017239	upf1	100	85.803	ENSMMUG00000023286	UPF1	100	85.714	Macaca_mulatta
ENSCSEG00000017239	upf1	100	86.032	ENSMNEG00000000046	UPF1	100	85.943	Macaca_nemestrina
ENSCSEG00000017239	upf1	94	87.417	ENSMLEG00000028404	UPF1	99	87.085	Mandrillus_leucophaeus
ENSCSEG00000017239	upf1	100	89.615	ENSMAMG00000006229	upf1	100	89.884	Mastacembelus_armatus
ENSCSEG00000017239	upf1	100	87.884	ENSMAMG00000006231	-	100	88.043	Mastacembelus_armatus
ENSCSEG00000017239	upf1	100	87.873	ENSMZEG00005016386	-	100	88.033	Maylandia_zebra
ENSCSEG00000017239	upf1	100	89.658	ENSMZEG00005003489	upf1	100	89.568	Maylandia_zebra
ENSCSEG00000017239	upf1	94	87.048	ENSMGAG00000004745	UPF1	100	86.907	Meleagris_gallopavo
ENSCSEG00000017239	upf1	96	85.914	ENSMAUG00000011398	Upf1	97	85.728	Mesocricetus_auratus
ENSCSEG00000017239	upf1	100	86.619	ENSMICG00000001659	UPF1	100	86.530	Microcebus_murinus
ENSCSEG00000017239	upf1	100	85.626	ENSMOCG00000005699	Upf1	100	85.626	Microtus_ochrogaster
ENSCSEG00000017239	upf1	95	85.048	ENSMMOG00000007537	-	99	85.291	Mola_mola
ENSCSEG00000017239	upf1	100	90.393	ENSMMOG00000007881	upf1	100	90.302	Mola_mola
ENSCSEG00000017239	upf1	100	85.198	ENSMODG00000003689	UPF1	100	85.374	Monodelphis_domestica
ENSCSEG00000017239	upf1	100	91.268	ENSMALG00000000144	upf1	100	91.360	Monopterus_albus
ENSCSEG00000017239	upf1	100	86.757	ENSMALG00000018100	-	100	86.992	Monopterus_albus
ENSCSEG00000017239	upf1	100	86.470	MGP_CAROLIEiJ_G0031142	Upf1	100	86.380	Mus_caroli
ENSCSEG00000017239	upf1	100	86.470	ENSMUSG00000058301	Upf1	100	86.380	Mus_musculus
ENSCSEG00000017239	upf1	100	86.470	MGP_PahariEiJ_G0021607	Upf1	100	86.380	Mus_pahari
ENSCSEG00000017239	upf1	100	86.470	MGP_SPRETEiJ_G0032260	Upf1	100	86.380	Mus_spretus
ENSCSEG00000017239	upf1	100	86.262	ENSMPUG00000015516	UPF1	100	86.173	Mustela_putorius_furo
ENSCSEG00000017239	upf1	99	86.213	ENSMLUG00000012122	UPF1	99	86.124	Myotis_lucifugus
ENSCSEG00000017239	upf1	100	85.487	ENSNGAG00000024107	Upf1	100	85.398	Nannospalax_galili
ENSCSEG00000017239	upf1	100	88.535	ENSNBRG00000000670	upf1	100	88.535	Neolamprologus_brichardi
ENSCSEG00000017239	upf1	100	84.642	ENSNBRG00000022069	-	100	87.003	Neolamprologus_brichardi
ENSCSEG00000017239	upf1	94	81.697	ENSNLEG00000006062	UPF1	99	81.387	Nomascus_leucogenys
ENSCSEG00000017239	upf1	83	75.930	ENSMEUG00000014146	-	83	76.125	Notamacropus_eugenii
ENSCSEG00000017239	upf1	95	82.133	ENSOPRG00000014018	UPF1	99	81.801	Ochotona_princeps
ENSCSEG00000017239	upf1	100	86.781	ENSODEG00000012426	UPF1	100	86.601	Octodon_degus
ENSCSEG00000017239	upf1	100	89.568	ENSONIG00000010452	upf1	100	89.478	Oreochromis_niloticus
ENSCSEG00000017239	upf1	100	87.387	ENSONIG00000012729	-	100	88.033	Oreochromis_niloticus
ENSCSEG00000017239	upf1	100	85.740	ENSOANG00000004568	UPF1	100	85.740	Ornithorhynchus_anatinus
ENSCSEG00000017239	upf1	100	87.579	ENSORLG00000008453	upf1	100	87.307	Oryzias_latipes
ENSCSEG00000017239	upf1	100	87.500	ENSORLG00020014758	upf1	100	87.228	Oryzias_latipes_hni
ENSCSEG00000017239	upf1	100	87.500	ENSORLG00015010165	upf1	100	87.228	Oryzias_latipes_hsok
ENSCSEG00000017239	upf1	100	87.692	ENSOMEG00000003665	upf1	100	87.489	Oryzias_melastigma
ENSCSEG00000017239	upf1	100	86.351	ENSOGAG00000012866	UPF1	100	86.262	Otolemur_garnettii
ENSCSEG00000017239	upf1	96	84.375	ENSOARG00000010739	UPF1	100	84.191	Ovis_aries
ENSCSEG00000017239	upf1	94	87.417	ENSPPAG00000043884	UPF1	96	87.226	Pan_paniscus
ENSCSEG00000017239	upf1	100	85.424	ENSPPRG00000023470	UPF1	100	85.336	Panthera_pardus
ENSCSEG00000017239	upf1	95	86.015	ENSPTIG00000010159	UPF1	99	85.824	Panthera_tigris_altaica
ENSCSEG00000017239	upf1	100	86.032	ENSPTRG00000010721	UPF1	100	85.943	Pan_troglodytes
ENSCSEG00000017239	upf1	100	86.032	ENSPANG00000008847	UPF1	100	85.943	Papio_anubis
ENSCSEG00000017239	upf1	96	87.177	ENSPKIG00000006069	upf1	95	90.900	Paramormyrops_kingsleyae
ENSCSEG00000017239	upf1	69	85.398	ENSPSIG00000009491	UPF1	100	85.007	Pelodiscus_sinensis
ENSCSEG00000017239	upf1	100	87.862	ENSPMGG00000017327	upf1	100	88.134	Periophthalmus_magnuspinnatus
ENSCSEG00000017239	upf1	100	85.626	ENSPEMG00000001085	Upf1	100	85.537	Peromyscus_maniculatus_bairdii
ENSCSEG00000017239	upf1	100	82.581	ENSPMAG00000001206	upf1	100	82.310	Petromyzon_marinus
ENSCSEG00000017239	upf1	100	86.786	ENSPCIG00000006156	UPF1	100	86.607	Phascolarctos_cinereus
ENSCSEG00000017239	upf1	100	88.649	ENSPLAG00000018155	-	100	88.288	Poecilia_latipinna
ENSCSEG00000017239	upf1	100	88.193	ENSPLAG00000016232	-	100	88.171	Poecilia_latipinna
ENSCSEG00000017239	upf1	100	89.608	ENSPMEG00000011443	-	100	89.426	Poecilia_mexicana
ENSCSEG00000017239	upf1	100	88.113	ENSPMEG00000016319	-	100	88.091	Poecilia_mexicana
ENSCSEG00000017239	upf1	100	88.011	ENSPREG00000011247	-	100	87.989	Poecilia_reticulata
ENSCSEG00000017239	upf1	100	88.309	ENSPREG00000009940	upf1	100	88.219	Poecilia_reticulata
ENSCSEG00000017239	upf1	100	82.663	ENSPPYG00000009752	UPF1	100	82.768	Pongo_abelii
ENSCSEG00000017239	upf1	70	97.701	ENSPCAG00000012962	UPF1	69	97.701	Procavia_capensis
ENSCSEG00000017239	upf1	100	86.057	ENSPCOG00000023813	UPF1	100	85.968	Propithecus_coquereli
ENSCSEG00000017239	upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSCSEG00000017239	upf1	100	87.873	ENSPNYG00000016731	-	100	88.033	Pundamilia_nyererei
ENSCSEG00000017239	upf1	100	89.658	ENSPNYG00000003694	upf1	100	89.568	Pundamilia_nyererei
ENSCSEG00000017239	upf1	100	88.198	ENSPNAG00000025614	upf1	100	88.838	Pygocentrus_nattereri
ENSCSEG00000017239	upf1	100	86.470	ENSRNOG00000020134	Upf1	100	86.380	Rattus_norvegicus
ENSCSEG00000017239	upf1	94	85.033	ENSRBIG00000013894	UPF1	98	87.322	Rhinopithecus_bieti
ENSCSEG00000017239	upf1	94	87.417	ENSRROG00000040935	UPF1	98	87.322	Rhinopithecus_roxellana
ENSCSEG00000017239	upf1	75	53.715	YMR080C	NAM7	84	53.715	Saccharomyces_cerevisiae
ENSCSEG00000017239	upf1	95	87.216	ENSSBOG00000023632	UPF1	96	87.027	Saimiri_boliviensis_boliviensis
ENSCSEG00000017239	upf1	94	87.631	ENSSHAG00000010499	UPF1	100	87.204	Sarcophilus_harrisii
ENSCSEG00000017239	upf1	100	87.939	ENSSFOG00015021095	upf1	100	88.577	Scleropages_formosus
ENSCSEG00000017239	upf1	100	87.715	ENSSMAG00000021018	-	100	87.862	Scophthalmus_maximus
ENSCSEG00000017239	upf1	100	88.819	ENSSMAG00000005055	upf1	100	88.879	Scophthalmus_maximus
ENSCSEG00000017239	upf1	100	90.331	ENSSDUG00000013320	upf1	100	89.884	Seriola_dumerili
ENSCSEG00000017239	upf1	100	87.895	ENSSDUG00000009629	-	100	88.134	Seriola_dumerili
ENSCSEG00000017239	upf1	100	91.147	ENSSLDG00000020868	upf1	100	90.696	Seriola_lalandi_dorsalis
ENSCSEG00000017239	upf1	100	87.895	ENSSLDG00000006878	-	100	88.134	Seriola_lalandi_dorsalis
ENSCSEG00000017239	upf1	100	86.601	ENSSPUG00000010538	UPF1	100	86.960	Sphenodon_punctatus
ENSCSEG00000017239	upf1	100	88.134	ENSSPAG00000011521	-	100	88.203	Stegastes_partitus
ENSCSEG00000017239	upf1	100	87.920	ENSSPAG00000000003	upf1	100	88.069	Stegastes_partitus
ENSCSEG00000017239	upf1	100	86.494	ENSSSCG00000039301	UPF1	99	87.835	Sus_scrofa
ENSCSEG00000017239	upf1	83	81.847	ENSTGUG00000001057	UPF1	100	90.828	Taeniopygia_guttata
ENSCSEG00000017239	upf1	100	86.890	ENSTRUG00000005131	-	100	87.103	Takifugu_rubripes
ENSCSEG00000017239	upf1	100	90.257	ENSTRUG00000000150	upf1	100	90.349	Takifugu_rubripes
ENSCSEG00000017239	upf1	100	83.005	ENSTTRG00000011544	UPF1	100	82.826	Tursiops_truncatus
ENSCSEG00000017239	upf1	100	86.262	ENSUAMG00000007093	UPF1	100	86.173	Ursus_americanus
ENSCSEG00000017239	upf1	95	88.027	ENSUMAG00000006652	UPF1	99	88.095	Ursus_maritimus
ENSCSEG00000017239	upf1	100	86.262	ENSVVUG00000007797	UPF1	100	86.173	Vulpes_vulpes
ENSCSEG00000017239	upf1	86	91.805	ENSXETG00000013602	upf1	91	91.805	Xenopus_tropicalis
ENSCSEG00000017239	upf1	94	88.167	ENSXCOG00000005764	-	99	88.144	Xiphophorus_couchianus
ENSCSEG00000017239	upf1	97	89.639	ENSXCOG00000015275	-	96	89.639	Xiphophorus_couchianus
ENSCSEG00000017239	upf1	100	89.899	ENSXMAG00000001703	-	100	89.899	Xiphophorus_maculatus
ENSCSEG00000017239	upf1	100	88.113	ENSXMAG00000002540	-	100	88.091	Xiphophorus_maculatus