EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000017659 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 8052 bases
Position: chr20:4510008-4518059
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000027664	ResIII	PF04851.15	9e-13	1	1
ENSCSEP00000027664	DEAD	PF00270.29	1.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000028033	-	3240	-	ENSCSEP00000027664	1079 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000017659's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000017659's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000017659	hfm1	60	32.198	ENSCSEG00000012811	ascc3	57	32.449
ENSCSEG00000017659	hfm1	67	31.825	ENSCSEG00000016399	snrnp200	64	31.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000017659	hfm1	93	60.621	ENSG00000162669	HFM1	70	60.621	Homo_sapiens
ENSCSEG00000017659	hfm1	77	85.033	ENSAPOG00000005304	hfm1	95	85.033	Acanthochromis_polyacanthus
ENSCSEG00000017659	hfm1	93	59.524	ENSAMEG00000000432	HFM1	71	59.524	Ailuropoda_melanoleuca
ENSCSEG00000017659	hfm1	95	72.514	ENSACIG00000021553	hfm1	94	72.514	Amphilophus_citrinellus
ENSCSEG00000017659	hfm1	76	82.625	ENSAOCG00000022839	hfm1	96	84.975	Amphiprion_ocellaris
ENSCSEG00000017659	hfm1	76	82.667	ENSAPEG00000014316	hfm1	96	85.570	Amphiprion_percula
ENSCSEG00000017659	hfm1	96	80.309	ENSATEG00000019181	hfm1	87	79.758	Anabas_testudineus
ENSCSEG00000017659	hfm1	94	59.526	ENSAPLG00000013639	HFM1	71	59.130	Anas_platyrhynchos
ENSCSEG00000017659	hfm1	97	57.116	ENSANAG00000029513	HFM1	73	57.209	Aotus_nancymaae
ENSCSEG00000017659	hfm1	96	72.290	ENSACLG00000009033	hfm1	97	76.251	Astatotilapia_calliptera
ENSCSEG00000017659	hfm1	89	70.564	ENSAMXG00000006108	hfm1	67	70.102	Astyanax_mexicanus
ENSCSEG00000017659	hfm1	94	59.885	ENSBTAG00000020856	HFM1	71	60.038	Bos_taurus
ENSCSEG00000017659	hfm1	93	60.038	ENSCJAG00000001843	HFM1	71	59.750	Callithrix_jacchus
ENSCSEG00000017659	hfm1	94	59.087	ENSCAFG00000020187	HFM1	71	59.087	Canis_familiaris
ENSCSEG00000017659	hfm1	95	58.630	ENSTSYG00000014250	HFM1	72	58.255	Carlito_syrichta
ENSCSEG00000017659	hfm1	94	59.164	ENSCPOG00000007421	HFM1	73	59.429	Cavia_porcellus
ENSCSEG00000017659	hfm1	93	59.330	ENSCCAG00000033206	HFM1	71	59.043	Cebus_capucinus
ENSCSEG00000017659	hfm1	93	59.558	ENSCATG00000030987	HFM1	70	59.597	Cercocebus_atys
ENSCSEG00000017659	hfm1	87	62.764	ENSCLAG00000005173	HFM1	63	62.632	Chinchilla_lanigera
ENSCSEG00000017659	hfm1	64	50.836	ENSCSAVG00000005094	-	100	50.836	Ciona_savignyi
ENSCSEG00000017659	hfm1	91	55.005	ENSCGRG00001016995	Hfm1	71	54.942	Cricetulus_griseus_chok1gshd
ENSCSEG00000017659	hfm1	94	57.048	ENSCGRG00000017181	Hfm1	71	56.980	Cricetulus_griseus_crigri
ENSCSEG00000017659	hfm1	65	79.606	ENSCVAG00000005075	hfm1	86	79.606	Cyprinodon_variegatus
ENSCSEG00000017659	hfm1	77	72.575	ENSDARG00000104288	hfm1	76	72.575	Danio_rerio
ENSCSEG00000017659	hfm1	91	60.790	ENSDNOG00000004776	HFM1	62	62.818	Dasypus_novemcinctus
ENSCSEG00000017659	hfm1	93	57.915	ENSDORG00000014661	Hfm1	71	57.915	Dipodomys_ordii
ENSCSEG00000017659	hfm1	93	57.061	ENSEASG00005015424	HFM1	98	56.676	Equus_asinus_asinus
ENSCSEG00000017659	hfm1	87	63.646	ENSECAG00000024039	HFM1	63	63.141	Equus_caballus
ENSCSEG00000017659	hfm1	84	74.482	ENSELUG00000018944	hfm1	97	74.373	Esox_lucius
ENSCSEG00000017659	hfm1	94	60.038	ENSFCAG00000029116	HFM1	71	60.038	Felis_catus
ENSCSEG00000017659	hfm1	88	63.448	ENSFALG00000001781	HFM1	71	60.153	Ficedula_albicollis
ENSCSEG00000017659	hfm1	87	63.119	ENSFDAG00000020816	HFM1	63	63.302	Fukomys_damarensis
ENSCSEG00000017659	hfm1	88	70.219	ENSGMOG00000017436	hfm1	99	69.937	Gadus_morhua
ENSCSEG00000017659	hfm1	95	70.161	ENSGAFG00000018093	hfm1	99	70.349	Gambusia_affinis
ENSCSEG00000017659	hfm1	87	75.916	ENSGACG00000015686	hfm1	97	75.812	Gasterosteus_aculeatus
ENSCSEG00000017659	hfm1	93	60.621	ENSGGOG00000038524	HFM1	70	60.621	Gorilla_gorilla
ENSCSEG00000017659	hfm1	96	72.411	ENSHBUG00000007309	hfm1	98	72.505	Haplochromis_burtoni
ENSCSEG00000017659	hfm1	75	77.737	ENSHCOG00000019632	hfm1	97	77.737	Hippocampus_comes
ENSCSEG00000017659	hfm1	88	68.854	ENSIPUG00000017020	hfm1	91	71.549	Ictalurus_punctatus
ENSCSEG00000017659	hfm1	87	61.765	ENSJJAG00000017198	Hfm1	67	61.960	Jaculus_jaculus
ENSCSEG00000017659	hfm1	85	74.946	ENSKMAG00000002282	hfm1	92	74.307	Kryptolebias_marmoratus
ENSCSEG00000017659	hfm1	99	72.274	ENSLBEG00000006759	hfm1	97	78.679	Labrus_bergylta
ENSCSEG00000017659	hfm1	90	63.387	ENSLACG00000010698	HFM1	100	59.256	Latimeria_chalumnae
ENSCSEG00000017659	hfm1	93	64.899	ENSLOCG00000004931	hfm1	94	64.899	Lepisosteus_oculatus
ENSCSEG00000017659	hfm1	62	68.107	ENSLAFG00000015903	-	90	68.107	Loxodonta_africana
ENSCSEG00000017659	hfm1	93	57.471	ENSMFAG00000003649	HFM1	70	57.512	Macaca_fascicularis
ENSCSEG00000017659	hfm1	93	59.691	ENSMMUG00000006819	HFM1	70	59.730	Macaca_mulatta
ENSCSEG00000017659	hfm1	74	84.487	ENSMAMG00000004623	hfm1	97	80.680	Mastacembelus_armatus
ENSCSEG00000017659	hfm1	95	72.332	ENSMZEG00005004679	hfm1	97	76.163	Maylandia_zebra
ENSCSEG00000017659	hfm1	71	65.670	ENSMGAG00000008437	HFM1	96	65.670	Meleagris_gallopavo
ENSCSEG00000017659	hfm1	94	57.211	ENSMAUG00000018858	Hfm1	71	57.008	Mesocricetus_auratus
ENSCSEG00000017659	hfm1	94	59.546	ENSMICG00000037935	HFM1	71	59.452	Microcebus_murinus
ENSCSEG00000017659	hfm1	94	57.622	ENSMOCG00000014812	Hfm1	71	57.156	Microtus_ochrogaster
ENSCSEG00000017659	hfm1	84	76.645	ENSMMOG00000006148	hfm1	92	81.280	Mola_mola
ENSCSEG00000017659	hfm1	90	84.512	ENSMALG00000002401	hfm1	95	84.512	Monopterus_albus
ENSCSEG00000017659	hfm1	82	72.881	MGP_CAROLIEiJ_G0027496	Hfm1	61	72.881	Mus_caroli
ENSCSEG00000017659	hfm1	94	57.799	ENSMUSG00000043410	Hfm1	71	57.703	Mus_musculus
ENSCSEG00000017659	hfm1	94	57.608	MGP_PahariEiJ_G0017268	Hfm1	71	57.512	Mus_pahari
ENSCSEG00000017659	hfm1	94	58.071	MGP_SPRETEiJ_G0028495	Hfm1	71	58.541	Mus_spretus
ENSCSEG00000017659	hfm1	87	62.513	ENSMPUG00000004594	HFM1	63	62.721	Mustela_putorius_furo
ENSCSEG00000017659	hfm1	94	59.013	ENSMLUG00000010200	HFM1	71	59.238	Myotis_lucifugus
ENSCSEG00000017659	hfm1	95	69.442	ENSNBRG00000002910	hfm1	97	79.146	Neolamprologus_brichardi
ENSCSEG00000017659	hfm1	93	58.584	ENSNLEG00000010285	HFM1	70	58.584	Nomascus_leucogenys
ENSCSEG00000017659	hfm1	86	58.615	ENSMEUG00000015788	HFM1	65	58.615	Notamacropus_eugenii
ENSCSEG00000017659	hfm1	77	60.864	ENSOPRG00000013916	HFM1	58	60.864	Ochotona_princeps
ENSCSEG00000017659	hfm1	95	72.086	ENSONIG00000010590	hfm1	99	72.295	Oreochromis_niloticus
ENSCSEG00000017659	hfm1	75	78.272	ENSORLG00000026844	hfm1	99	78.272	Oryzias_latipes
ENSCSEG00000017659	hfm1	90	65.846	ENSORLG00020002951	hfm1	76	66.084	Oryzias_latipes_hni
ENSCSEG00000017659	hfm1	90	73.163	ENSOMEG00000016474	hfm1	67	72.857	Oryzias_melastigma
ENSCSEG00000017659	hfm1	87	62.917	ENSOGAG00000032369	HFM1	76	62.917	Otolemur_garnettii
ENSCSEG00000017659	hfm1	94	59.750	ENSOARG00000015812	HFM1	71	59.789	Ovis_aries
ENSCSEG00000017659	hfm1	93	60.815	ENSPPAG00000024582	HFM1	76	60.815	Pan_paniscus
ENSCSEG00000017659	hfm1	94	60.405	ENSPPRG00000003270	HFM1	71	60.405	Panthera_pardus
ENSCSEG00000017659	hfm1	94	60.405	ENSPTIG00000018881	HFM1	71	60.405	Panthera_tigris_altaica
ENSCSEG00000017659	hfm1	93	60.815	ENSPTRG00000000948	HFM1	70	60.815	Pan_troglodytes
ENSCSEG00000017659	hfm1	93	59.366	ENSPANG00000009838	HFM1	70	59.597	Papio_anubis
ENSCSEG00000017659	hfm1	97	63.148	ENSPKIG00000003810	hfm1	94	70.777	Paramormyrops_kingsleyae
ENSCSEG00000017659	hfm1	76	75.971	ENSPMGG00000011059	hfm1	100	75.971	Periophthalmus_magnuspinnatus
ENSCSEG00000017659	hfm1	94	57.784	ENSPEMG00000022852	Hfm1	71	57.541	Peromyscus_maniculatus_bairdii
ENSCSEG00000017659	hfm1	87	62.657	ENSPCIG00000014233	HFM1	63	62.357	Phascolarctos_cinereus
ENSCSEG00000017659	hfm1	94	71.361	ENSPFOG00000017194	hfm1	100	71.239	Poecilia_formosa
ENSCSEG00000017659	hfm1	98	70.626	ENSPLAG00000000571	hfm1	97	70.626	Poecilia_latipinna
ENSCSEG00000017659	hfm1	96	72.227	ENSPMEG00000019475	hfm1	95	72.133	Poecilia_mexicana
ENSCSEG00000017659	hfm1	95	72.684	ENSPREG00000007803	hfm1	97	72.217	Poecilia_reticulata
ENSCSEG00000017659	hfm1	93	60.718	ENSPPYG00000001163	HFM1	70	60.718	Pongo_abelii
ENSCSEG00000017659	hfm1	90	57.070	ENSPVAG00000009713	HFM1	68	57.070	Pteropus_vampyrus
ENSCSEG00000017659	hfm1	96	72.102	ENSPNYG00000001795	hfm1	97	76.047	Pundamilia_nyererei
ENSCSEG00000017659	hfm1	77	72.488	ENSPNAG00000010865	hfm1	83	72.488	Pygocentrus_nattereri
ENSCSEG00000017659	hfm1	94	57.703	ENSRNOG00000023299	Hfm1	71	57.703	Rattus_norvegicus
ENSCSEG00000017659	hfm1	93	60.233	ENSRROG00000045569	HFM1	70	59.845	Rhinopithecus_roxellana
ENSCSEG00000017659	hfm1	87	62.878	ENSSBOG00000027456	HFM1	66	62.565	Saimiri_boliviensis_boliviensis
ENSCSEG00000017659	hfm1	54	67.568	ENSSHAG00000014616	-	67	67.568	Sarcophilus_harrisii
ENSCSEG00000017659	hfm1	87	71.399	ENSSFOG00015020129	hfm1	63	71.698	Scleropages_formosus
ENSCSEG00000017659	hfm1	84	80.328	ENSSMAG00000006907	hfm1	88	80.151	Scophthalmus_maximus
ENSCSEG00000017659	hfm1	76	82.909	ENSSDUG00000011424	hfm1	93	82.909	Seriola_dumerili
ENSCSEG00000017659	hfm1	76	82.667	ENSSLDG00000016386	hfm1	92	82.667	Seriola_lalandi_dorsalis
ENSCSEG00000017659	hfm1	92	70.600	ENSSPAG00000001023	hfm1	93	82.160	Stegastes_partitus
ENSCSEG00000017659	hfm1	87	63.722	ENSSSCG00000006912	HFM1	68	63.722	Sus_scrofa
ENSCSEG00000017659	hfm1	88	63.721	ENSTGUG00000006172	HFM1	98	63.950	Taeniopygia_guttata
ENSCSEG00000017659	hfm1	94	59.637	ENSTTRG00000013933	HFM1	72	59.637	Tursiops_truncatus
ENSCSEG00000017659	hfm1	94	57.824	ENSVPAG00000011331	HFM1	71	57.824	Vicugna_pacos
ENSCSEG00000017659	hfm1	92	56.214	ENSVVUG00000020760	HFM1	97	66.541	Vulpes_vulpes
ENSCSEG00000017659	hfm1	79	75.291	ENSXMAG00000004178	hfm1	93	75.291	Xiphophorus_maculatus