EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000017800 (Gene tree)
Gene ID: 103393202
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 3313 bases
Position: chr17:10693594-10696906
Accession: 103393202
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000027843	RRM_1	PF00076.22	6.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000028218	-	1693	XM_008330075	ENSCSEP00000027843	270 (aa)	XP_008328297	UPI00049590A2

Gene Model

Click here to download ENSCSEG00000017800's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03013	RNA transport	KEGG
csem03015	mRNA surveillance pathway	KEGG
csem03040	Spliceosome	KEGG
csem05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000017800's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000017800	alyref	71	56.410	ENSCSEG00000015438	-	98	56.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000017800	alyref	100	53.650	ENSAPOG00000000183	-	100	52.920	Acanthochromis_polyacanthus
ENSCSEG00000017800	alyref	99	72.426	ENSACIG00000006351	alyref	98	73.091	Amphilophus_citrinellus
ENSCSEG00000017800	alyref	100	52.448	ENSACIG00000020351	-	100	51.408	Amphilophus_citrinellus
ENSCSEG00000017800	alyref	100	52.190	ENSAOCG00000019305	-	100	52.190	Amphiprion_ocellaris
ENSCSEG00000017800	alyref	100	80.586	ENSAOCG00000014012	alyref	100	86.081	Amphiprion_ocellaris
ENSCSEG00000017800	alyref	100	80.586	ENSAPEG00000014603	alyref	100	86.081	Amphiprion_percula
ENSCSEG00000017800	alyref	100	52.555	ENSAPEG00000013527	-	100	52.555	Amphiprion_percula
ENSCSEG00000017800	alyref	100	74.460	ENSATEG00000004307	alyref	100	80.576	Anabas_testudineus
ENSCSEG00000017800	alyref	100	58.545	ENSATEG00000000382	-	100	54.909	Anabas_testudineus
ENSCSEG00000017800	alyref	51	73.050	ENSAPLG00000014745	-	100	73.759	Anas_platyrhynchos
ENSCSEG00000017800	alyref	100	81.685	ENSACLG00000008432	alyref	100	78.909	Astatotilapia_calliptera
ENSCSEG00000017800	alyref	100	55.755	ENSACLG00000010184	-	100	55.197	Astatotilapia_calliptera
ENSCSEG00000017800	alyref	100	71.886	ENSAMXG00000007359	alyref	100	73.404	Astyanax_mexicanus
ENSCSEG00000017800	alyref	99	44.649	ENSCING00000013568	-	99	45.035	Ciona_intestinalis
ENSCSEG00000017800	alyref	99	45.353	ENSCSAVG00000003324	-	99	42.435	Ciona_savignyi
ENSCSEG00000017800	alyref	100	82.721	ENSCVAG00000014869	alyref	100	81.250	Cyprinodon_variegatus
ENSCSEG00000017800	alyref	100	50.000	ENSCVAG00000007789	-	100	45.421	Cyprinodon_variegatus
ENSCSEG00000017800	alyref	100	77.739	ENSDARG00000077732	alyref	100	75.265	Danio_rerio
ENSCSEG00000017800	alyref	97	45.263	FBgn0010774	Ref1	98	40.672	Drosophila_melanogaster
ENSCSEG00000017800	alyref	99	51.311	ENSEBUG00000008253	alyref	95	49.438	Eptatretus_burgeri
ENSCSEG00000017800	alyref	100	42.446	ENSEBUG00000006305	alyref	100	40.845	Eptatretus_burgeri
ENSCSEG00000017800	alyref	100	72.364	ENSELUG00000017178	alyref	100	71.273	Esox_lucius
ENSCSEG00000017800	alyref	100	69.314	ENSELUG00000008849	-	100	63.538	Esox_lucius
ENSCSEG00000017800	alyref	60	77.640	ENSFALG00000011923	-	96	76.433	Ficedula_albicollis
ENSCSEG00000017800	alyref	100	78.467	ENSFHEG00000019426	alyref	100	77.737	Fundulus_heteroclitus
ENSCSEG00000017800	alyref	100	49.265	ENSFHEG00000004698	-	100	47.273	Fundulus_heteroclitus
ENSCSEG00000017800	alyref	70	58.974	ENSGMOG00000013122	-	100	58.115	Gadus_morhua
ENSCSEG00000017800	alyref	100	70.588	ENSGMOG00000009882	alyref	100	69.485	Gadus_morhua
ENSCSEG00000017800	alyref	100	48.175	ENSGAFG00000007573	-	76	50.769	Gambusia_affinis
ENSCSEG00000017800	alyref	100	81.227	ENSGAFG00000006014	alyref	100	77.617	Gambusia_affinis
ENSCSEG00000017800	alyref	100	81.685	ENSHBUG00000020196	alyref	100	78.909	Haplochromis_burtoni
ENSCSEG00000017800	alyref	100	56.071	ENSHBUG00000001454	-	100	56.429	Haplochromis_burtoni
ENSCSEG00000017800	alyref	98	49.438	ENSHCOG00000012825	-	94	48.689	Hippocampus_comes
ENSCSEG00000017800	alyref	100	73.118	ENSIPUG00000009469	alyref	100	72.401	Ictalurus_punctatus
ENSCSEG00000017800	alyref	75	65.025	ENSSTOG00000016570	-	92	63.021	Ictidomys_tridecemlineatus
ENSCSEG00000017800	alyref	100	53.480	ENSKMAG00000006462	-	100	52.381	Kryptolebias_marmoratus
ENSCSEG00000017800	alyref	100	82.909	ENSKMAG00000008912	alyref	100	80.072	Kryptolebias_marmoratus
ENSCSEG00000017800	alyref	100	51.903	ENSLBEG00000005387	-	100	49.825	Labrus_bergylta
ENSCSEG00000017800	alyref	100	80.216	ENSLBEG00000023118	alyref	90	78.417	Labrus_bergylta
ENSCSEG00000017800	alyref	99	50.549	ENSLBEG00000012930	-	99	48.339	Labrus_bergylta
ENSCSEG00000017800	alyref	78	73.953	ENSLOCG00000013879	alyref	89	71.495	Lepisosteus_oculatus
ENSCSEG00000017800	alyref	100	78.309	ENSMAMG00000003034	alyref	100	80.220	Mastacembelus_armatus
ENSCSEG00000017800	alyref	100	51.825	ENSMAMG00000005464	-	100	49.635	Mastacembelus_armatus
ENSCSEG00000017800	alyref	100	81.685	ENSMZEG00005008639	alyref	100	78.909	Maylandia_zebra
ENSCSEG00000017800	alyref	100	55.396	ENSMZEG00005012096	-	100	54.839	Maylandia_zebra
ENSCSEG00000017800	alyref	99	81.481	ENSMMOG00000012458	alyref	97	80.220	Mola_mola
ENSCSEG00000017800	alyref	99	47.584	ENSMMOG00000007032	-	98	45.725	Mola_mola
ENSCSEG00000017800	alyref	100	53.521	ENSMALG00000006054	-	100	51.812	Monopterus_albus
ENSCSEG00000017800	alyref	100	59.220	ENSMLUG00000014372	-	100	58.065	Myotis_lucifugus
ENSCSEG00000017800	alyref	100	58.156	ENSMLUG00000006521	-	100	56.318	Myotis_lucifugus
ENSCSEG00000017800	alyref	98	53.237	ENSMLUG00000028605	-	98	54.317	Myotis_lucifugus
ENSCSEG00000017800	alyref	98	55.720	ENSMLUG00000022178	-	98	55.351	Myotis_lucifugus
ENSCSEG00000017800	alyref	98	55.160	ENSMLUG00000022467	-	98	52.518	Myotis_lucifugus
ENSCSEG00000017800	alyref	98	54.647	ENSMLUG00000009247	-	98	51.866	Myotis_lucifugus
ENSCSEG00000017800	alyref	98	56.522	ENSMLUG00000030671	-	99	54.286	Myotis_lucifugus
ENSCSEG00000017800	alyref	100	59.286	ENSMLUG00000004098	-	100	56.618	Myotis_lucifugus
ENSCSEG00000017800	alyref	100	68.519	ENSNGAG00000022014	-	100	64.444	Nannospalax_galili
ENSCSEG00000017800	alyref	100	79.636	ENSNBRG00000001747	alyref	100	80.866	Neolamprologus_brichardi
ENSCSEG00000017800	alyref	100	56.159	ENSNBRG00000017460	-	100	55.957	Neolamprologus_brichardi
ENSCSEG00000017800	alyref	100	58.182	ENSONIG00000003296	-	100	56.000	Oreochromis_niloticus
ENSCSEG00000017800	alyref	100	84.532	ENSONIG00000019434	alyref	100	82.734	Oreochromis_niloticus
ENSCSEG00000017800	alyref	99	40.645	ENSORLG00000001620	-	58	47.619	Oryzias_latipes
ENSCSEG00000017800	alyref	100	80.727	ENSORLG00020011942	alyref	100	77.818	Oryzias_latipes_hni
ENSCSEG00000017800	alyref	99	50.000	ENSORLG00020015673	-	99	47.445	Oryzias_latipes_hni
ENSCSEG00000017800	alyref	100	82.418	ENSORLG00015022664	alyref	100	78.388	Oryzias_latipes_hsok
ENSCSEG00000017800	alyref	99	49.817	ENSORLG00015015143	-	99	47.810	Oryzias_latipes_hsok
ENSCSEG00000017800	alyref	100	78.832	ENSOMEG00000019176	alyref	100	77.372	Oryzias_melastigma
ENSCSEG00000017800	alyref	99	50.558	ENSOMEG00000007158	-	97	46.667	Oryzias_melastigma
ENSCSEG00000017800	alyref	71	76.684	ENSPPAG00000036403	-	68	72.487	Pan_paniscus
ENSCSEG00000017800	alyref	99	70.849	ENSPKIG00000006233	-	81	66.296	Paramormyrops_kingsleyae
ENSCSEG00000017800	alyref	100	70.909	ENSPKIG00000007070	alyref	100	68.364	Paramormyrops_kingsleyae
ENSCSEG00000017800	alyref	71	51.042	ENSPMGG00000012994	-	93	48.108	Periophthalmus_magnuspinnatus
ENSCSEG00000017800	alyref	99	79.104	ENSPMGG00000016600	alyref	91	77.122	Periophthalmus_magnuspinnatus
ENSCSEG00000017800	alyref	100	65.926	ENSPEMG00000016628	-	100	60.650	Peromyscus_maniculatus_bairdii
ENSCSEG00000017800	alyref	100	79.496	ENSPFOG00000022825	alyref	99	77.338	Poecilia_formosa
ENSCSEG00000017800	alyref	100	48.529	ENSPFOG00000017094	-	100	45.421	Poecilia_formosa
ENSCSEG00000017800	alyref	100	48.529	ENSPLAG00000014380	-	100	45.421	Poecilia_latipinna
ENSCSEG00000017800	alyref	100	79.783	ENSPLAG00000006948	alyref	100	78.339	Poecilia_latipinna
ENSCSEG00000017800	alyref	100	48.529	ENSPMEG00000023039	-	100	45.421	Poecilia_mexicana
ENSCSEG00000017800	alyref	100	79.496	ENSPMEG00000003547	alyref	100	77.338	Poecilia_mexicana
ENSCSEG00000017800	alyref	100	49.630	ENSPREG00000003649	-	100	47.407	Poecilia_reticulata
ENSCSEG00000017800	alyref	100	79.422	ENSPREG00000015795	alyref	100	77.978	Poecilia_reticulata
ENSCSEG00000017800	alyref	100	81.685	ENSPNYG00000017498	alyref	100	78.909	Pundamilia_nyererei
ENSCSEG00000017800	alyref	99	54.015	ENSPNYG00000002879	-	98	53.818	Pundamilia_nyererei
ENSCSEG00000017800	alyref	100	75.362	ENSPNAG00000002531	alyref	100	73.913	Pygocentrus_nattereri
ENSCSEG00000017800	alyref	74	75.377	ENSSBOG00000030924	-	87	71.717	Saimiri_boliviensis_boliviensis
ENSCSEG00000017800	alyref	99	58.065	ENSSHAG00000000609	-	99	53.285	Sarcophilus_harrisii
ENSCSEG00000017800	alyref	99	55.556	ENSSHAG00000012866	-	99	52.222	Sarcophilus_harrisii
ENSCSEG00000017800	alyref	78	79.245	ENSSFOG00015003923	alyref	72	72.170	Scleropages_formosus
ENSCSEG00000017800	alyref	70	76.963	ENSSFOG00015003678	alyref	83	74.211	Scleropages_formosus
ENSCSEG00000017800	alyref	100	50.903	ENSSMAG00000011169	-	100	54.592	Scophthalmus_maximus
ENSCSEG00000017800	alyref	100	79.636	ENSSMAG00000009283	alyref	100	80.364	Scophthalmus_maximus
ENSCSEG00000017800	alyref	100	81.319	ENSSDUG00000016158	alyref	100	86.081	Seriola_dumerili
ENSCSEG00000017800	alyref	100	80.952	ENSSLDG00000017803	alyref	100	81.387	Seriola_lalandi_dorsalis
ENSCSEG00000017800	alyref	99	53.846	ENSSPAG00000017028	-	96	53.137	Stegastes_partitus
ENSCSEG00000017800	alyref	100	52.143	ENSTRUG00000003051	-	100	51.095	Takifugu_rubripes
ENSCSEG00000017800	alyref	100	73.091	ENSTNIG00000011595	alyref	100	72.628	Tetraodon_nigroviridis
ENSCSEG00000017800	alyref	100	52.015	ENSTNIG00000014136	-	100	46.520	Tetraodon_nigroviridis
ENSCSEG00000017800	alyref	71	77.720	ENSVVUG00000000272	-	82	74.479	Vulpes_vulpes
ENSCSEG00000017800	alyref	99	80.657	ENSXCOG00000018047	alyref	99	75.812	Xiphophorus_couchianus
ENSCSEG00000017800	alyref	100	48.727	ENSXMAG00000018086	-	100	45.421	Xiphophorus_maculatus
ENSCSEG00000017800	alyref	99	80.292	ENSXMAG00000012218	alyref	99	75.812	Xiphophorus_maculatus