EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000018133 (Gene tree)
Gene ID: 103395000
Gene Symbol: rab34b
Alias: si:dkey-220h13.7
Full Name: ras-related protein Rab-34-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 6809 bases
Position: chr19:6030716-6037524
Accession: 103395000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000028349	MMR_HSR1	PF01926.23	1.6e-06	1	1
ENSCSEP00000028356	MMR_HSR1	PF01926.23	1.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000028731	-	1006	XM_008332528	ENSCSEP00000028349	252 (aa)	XP_016897215	UPI0007DCAF63
ENSCSET00000028738	-	4353	XM_017041728	ENSCSEP00000028356	252 (aa)	XP_016897217	UPI0007DCAF63

Gene Model

Click here to download ENSCSEG00000018133's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000018133's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000018133	rab34b	66	35.542	ENSCSEG00000017211	rab2a	76	35.542
ENSCSEG00000018133	rab34b	59	36.601	ENSCSEG00000014467	rab9b	68	36.601
ENSCSEG00000018133	rab34b	76	34.158	ENSCSEG00000000205	RAB15	96	34.158
ENSCSEG00000018133	rab34b	51	37.500	ENSCSEG00000012149	rab11bb	58	37.500
ENSCSEG00000018133	rab34b	64	36.025	ENSCSEG00000007292	rab30	77	36.025
ENSCSEG00000018133	rab34b	50	40.476	ENSCSEG00000020348	rab33ba	53	40.476
ENSCSEG00000018133	rab34b	69	33.143	ENSCSEG00000019183	si:dkey-34d22.5	78	33.143
ENSCSEG00000018133	rab34b	67	35.119	ENSCSEG00000003768	rab15	70	35.119
ENSCSEG00000018133	rab34b	52	40.152	ENSCSEG00000017861	-	62	40.152
ENSCSEG00000018133	rab34b	59	30.872	ENSCSEG00000019797	rab22a	75	30.872
ENSCSEG00000018133	rab34b	65	32.927	ENSCSEG00000010402	-	68	32.927
ENSCSEG00000018133	rab34b	54	37.500	ENSCSEG00000010565	rab23	70	39.456
ENSCSEG00000018133	rab34b	67	36.905	ENSCSEG00000016498	rab14	76	36.905
ENSCSEG00000018133	rab34b	79	33.495	ENSCSEG00000016284	rab33a	72	33.495
ENSCSEG00000018133	rab34b	58	39.189	ENSCSEG00000019722	RAB39B	69	39.189
ENSCSEG00000018133	rab34b	64	37.037	ENSCSEG00000014416	zgc:171927	74	37.037
ENSCSEG00000018133	rab34b	71	37.079	ENSCSEG00000003122	rab6ba	84	37.079
ENSCSEG00000018133	rab34b	50	37.795	ENSCSEG00000017026	rab25a	59	37.795
ENSCSEG00000018133	rab34b	62	31.847	ENSCSEG00000003537	rhebl1	83	31.847
ENSCSEG00000018133	rab34b	62	35.032	ENSCSEG00000010582	rab42a	71	35.032
ENSCSEG00000018133	rab34b	94	65.126	ENSCSEG00000012961	rab34a	92	65.126
ENSCSEG00000018133	rab34b	59	41.176	ENSCSEG00000014479	-	62	41.176
ENSCSEG00000018133	rab34b	51	39.062	ENSCSEG00000011996	rab11al	65	39.062
ENSCSEG00000018133	rab34b	64	38.272	ENSCSEG00000004941	rab41	75	38.272
ENSCSEG00000018133	rab34b	59	37.838	ENSCSEG00000002358	rab13	73	37.838
ENSCSEG00000018133	rab34b	71	30.726	ENSCSEG00000016803	rab18b	89	30.726
ENSCSEG00000018133	rab34b	60	31.613	ENSCSEG00000010116	rab9a	72	31.613
ENSCSEG00000018133	rab34b	58	38.776	ENSCSEG00000013400	rab35b	71	38.776
ENSCSEG00000018133	rab34b	50	44.444	ENSCSEG00000006243	zgc:101559	54	44.444
ENSCSEG00000018133	rab34b	64	38.272	ENSCSEG00000016556	rab6bb	76	38.272
ENSCSEG00000018133	rab34b	51	37.500	ENSCSEG00000007239	-	58	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000018133	rab34b	91	80.435	ENSAPOG00000019147	rab34b	95	76.382	Acanthochromis_polyacanthus
ENSCSEG00000018133	rab34b	96	71.784	ENSACIG00000004859	rab34b	95	71.784	Amphilophus_citrinellus
ENSCSEG00000018133	rab34b	95	82.845	ENSAOCG00000007106	rab34b	87	82.845	Amphiprion_ocellaris
ENSCSEG00000018133	rab34b	89	83.482	ENSAPEG00000018607	rab34b	80	83.482	Amphiprion_percula
ENSCSEG00000018133	rab34b	89	80.804	ENSATEG00000006851	rab34b	90	80.804	Anabas_testudineus
ENSCSEG00000018133	rab34b	94	81.780	ENSACLG00000005733	rab34b	89	81.780	Astatotilapia_calliptera
ENSCSEG00000018133	rab34b	93	70.638	ENSAMXG00000006018	rab34b	91	70.638	Astyanax_mexicanus
ENSCSEG00000018133	rab34b	95	72.917	ENSDARG00000010977	rab34b	93	72.917	Danio_rerio
ENSCSEG00000018133	rab34b	94	79.237	ENSELUG00000005597	rab34b	91	79.237	Esox_lucius
ENSCSEG00000018133	rab34b	94	80.932	ENSFHEG00000004532	rab34b	93	80.932	Fundulus_heteroclitus
ENSCSEG00000018133	rab34b	75	79.365	ENSGMOG00000007140	rab34b	91	79.365	Gadus_morhua
ENSCSEG00000018133	rab34b	94	82.203	ENSGACG00000020514	rab34b	91	82.203	Gasterosteus_aculeatus
ENSCSEG00000018133	rab34b	93	69.787	ENSIPUG00000024531	rab34	91	69.787	Ictalurus_punctatus
ENSCSEG00000018133	rab34b	94	80.932	ENSKMAG00000019341	rab34b	92	80.932	Kryptolebias_marmoratus
ENSCSEG00000018133	rab34b	95	80.753	ENSLBEG00000027819	rab34b	92	84.324	Labrus_bergylta
ENSCSEG00000018133	rab34b	92	83.262	ENSMAMG00000020214	rab34b	92	83.262	Mastacembelus_armatus
ENSCSEG00000018133	rab34b	95	82.008	ENSMMOG00000010936	rab34b	83	82.008	Mola_mola
ENSCSEG00000018133	rab34b	100	75.794	ENSMALG00000018499	rab34b	91	75.794	Monopterus_albus
ENSCSEG00000018133	rab34b	100	77.778	ENSONIG00000005519	rab34b	93	81.356	Oreochromis_niloticus
ENSCSEG00000018133	rab34b	94	81.780	ENSORLG00000003119	rab34b	86	81.780	Oryzias_latipes
ENSCSEG00000018133	rab34b	94	81.780	ENSORLG00020016139	rab34b	86	81.780	Oryzias_latipes_hni
ENSCSEG00000018133	rab34b	94	81.780	ENSORLG00015000584	rab34b	86	81.780	Oryzias_latipes_hsok
ENSCSEG00000018133	rab34b	94	81.356	ENSOMEG00000010334	rab34b	91	80.000	Oryzias_melastigma
ENSCSEG00000018133	rab34b	95	67.917	ENSPKIG00000013326	rab34b	93	67.917	Paramormyrops_kingsleyae
ENSCSEG00000018133	rab34b	94	80.932	ENSPMGG00000021697	rab34b	92	80.932	Periophthalmus_magnuspinnatus
ENSCSEG00000018133	rab34b	94	81.356	ENSPFOG00000011444	rab34b	92	81.356	Poecilia_formosa
ENSCSEG00000018133	rab34b	94	81.356	ENSPLAG00000005074	rab34b	93	81.356	Poecilia_latipinna
ENSCSEG00000018133	rab34b	94	81.356	ENSPMEG00000013297	rab34b	93	81.356	Poecilia_mexicana
ENSCSEG00000018133	rab34b	94	80.932	ENSPREG00000009813	rab34b	93	80.932	Poecilia_reticulata
ENSCSEG00000018133	rab34b	96	72.199	ENSPNYG00000017153	rab34b	99	85.393	Pundamilia_nyererei
ENSCSEG00000018133	rab34b	85	74.884	ENSPNAG00000015040	rab34b	90	74.884	Pygocentrus_nattereri
ENSCSEG00000018133	rab34b	94	68.644	ENSSFOG00015005188	rab34	91	68.644	Scleropages_formosus
ENSCSEG00000018133	rab34b	95	84.100	ENSSMAG00000019926	rab34b	96	84.100	Scophthalmus_maximus
ENSCSEG00000018133	rab34b	94	85.169	ENSSDUG00000016760	rab34b	73	85.169	Seriola_dumerili
ENSCSEG00000018133	rab34b	73	87.568	ENSSLDG00000014812	rab34b	90	87.568	Seriola_lalandi_dorsalis
ENSCSEG00000018133	rab34b	94	82.203	ENSSPAG00000002801	rab34b	93	82.203	Stegastes_partitus
ENSCSEG00000018133	rab34b	96	80.083	ENSTRUG00000014481	rab34b	97	80.083	Takifugu_rubripes
ENSCSEG00000018133	rab34b	96	78.838	ENSTNIG00000016158	rab34b	93	78.838	Tetraodon_nigroviridis