EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000018141 (Gene tree)
Gene ID: 103394437
Gene Symbol: snrpd1
Alias: CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2603 bases
Position: chr18:11099300-11101902
Accession: 103394437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000028362	LSM	PF01423.22	1.5e-17	1	1
ENSCSEP00000028360	LSM	PF01423.22	1.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000028744	-	390	-	ENSCSEP00000028362	129 (aa)	-	-
ENSCSET00000028742	-	1359	XM_008331747	ENSCSEP00000028360	119 (aa)	XP_008329969	UPI000497B0EB

Gene Model

Click here to download ENSCSEG00000018141's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000018141's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000018141	snrpd1	62	31.081	ENSCSEG00000010374	oscp1a	50	31.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000018141	snrpd1	81	94.792	ENSG00000167088	SNRPD1	80	94.737	Homo_sapiens
ENSCSEG00000018141	snrpd1	100	98.319	ENSAPOG00000019446	snrpd1	65	98.319	Acanthochromis_polyacanthus
ENSCSEG00000018141	snrpd1	79	92.553	ENSAMEG00000002576	SNRPD1	79	92.473	Ailuropoda_melanoleuca
ENSCSEG00000018141	snrpd1	94	98.214	ENSACIG00000011263	snrpd1	100	98.214	Amphilophus_citrinellus
ENSCSEG00000018141	snrpd1	100	98.319	ENSAOCG00000007406	snrpd1	100	98.319	Amphiprion_ocellaris
ENSCSEG00000018141	snrpd1	94	98.214	ENSAPEG00000012539	SNRPD1	100	98.214	Amphiprion_percula
ENSCSEG00000018141	snrpd1	100	94.118	ENSAPEG00000014961	snrpd1	100	94.118	Amphiprion_percula
ENSCSEG00000018141	snrpd1	100	98.319	ENSATEG00000014399	snrpd1	100	98.319	Anabas_testudineus
ENSCSEG00000018141	snrpd1	77	94.565	ENSAPLG00000012256	SNRPD1	76	94.505	Anas_platyrhynchos
ENSCSEG00000018141	snrpd1	81	94.792	ENSACAG00000006364	SNRPD1	80	94.737	Anolis_carolinensis
ENSCSEG00000018141	snrpd1	81	94.792	ENSANAG00000025641	SNRPD1	80	94.737	Aotus_nancymaae
ENSCSEG00000018141	snrpd1	94	98.214	ENSACLG00000017406	snrpd1	100	98.214	Astatotilapia_calliptera
ENSCSEG00000018141	snrpd1	100	97.479	ENSAMXG00000004589	snrpd1	100	97.479	Astyanax_mexicanus
ENSCSEG00000018141	snrpd1	81	94.792	ENSBTAG00000008292	SNRPD1	80	94.737	Bos_taurus
ENSCSEG00000018141	snrpd1	81	92.708	ENSBTAG00000012376	-	71	92.632	Bos_taurus
ENSCSEG00000018141	snrpd1	81	90.625	ENSBTAG00000047266	-	80	90.526	Bos_taurus
ENSCSEG00000018141	snrpd1	79	89.362	ENSBTAG00000055316	-	79	90.217	Bos_taurus
ENSCSEG00000018141	snrpd1	72	77.907	WBGene00004916	snr-3	75	73.684	Caenorhabditis_elegans
ENSCSEG00000018141	snrpd1	81	94.792	ENSCJAG00000042955	SNRPD1	80	94.737	Callithrix_jacchus
ENSCSEG00000018141	snrpd1	81	94.792	ENSCAFG00000018247	SNRPD1	80	94.737	Canis_familiaris
ENSCSEG00000018141	snrpd1	80	94.737	ENSCAFG00020015914	SNRPD1	74	94.737	Canis_lupus_dingo
ENSCSEG00000018141	snrpd1	81	91.667	ENSCHIG00000005557	SNRPD1	78	93.548	Capra_hircus
ENSCSEG00000018141	snrpd1	81	94.792	ENSTSYG00000030028	SNRPD1	80	94.737	Carlito_syrichta
ENSCSEG00000018141	snrpd1	77	93.478	ENSCAPG00000008103	SNRPD1	78	93.407	Cavia_aperea
ENSCSEG00000018141	snrpd1	81	94.792	ENSCPOG00000004679	SNRPD1	80	94.737	Cavia_porcellus
ENSCSEG00000018141	snrpd1	81	90.625	ENSCCAG00000005390	-	80	90.526	Cebus_capucinus
ENSCSEG00000018141	snrpd1	81	94.792	ENSCCAG00000032658	SNRPD1	80	94.737	Cebus_capucinus
ENSCSEG00000018141	snrpd1	81	91.667	ENSCCAG00000016652	-	80	91.579	Cebus_capucinus
ENSCSEG00000018141	snrpd1	81	93.750	ENSCCAG00000020611	-	80	93.684	Cebus_capucinus
ENSCSEG00000018141	snrpd1	81	94.792	ENSCATG00000039978	SNRPD1	80	94.737	Cercocebus_atys
ENSCSEG00000018141	snrpd1	81	94.792	ENSCLAG00000008691	SNRPD1	80	94.737	Chinchilla_lanigera
ENSCSEG00000018141	snrpd1	81	94.792	ENSCSAG00000017654	SNRPD1	80	94.737	Chlorocebus_sabaeus
ENSCSEG00000018141	snrpd1	81	94.792	ENSCPBG00000023143	SNRPD1	81	94.737	Chrysemys_picta_bellii
ENSCSEG00000018141	snrpd1	72	83.721	ENSCING00000024100	-	69	83.721	Ciona_intestinalis
ENSCSEG00000018141	snrpd1	73	82.759	ENSCSAVG00000004578	-	70	82.759	Ciona_savignyi
ENSCSEG00000018141	snrpd1	81	71.875	ENSCGRG00001009945	-	84	71.579	Cricetulus_griseus_chok1gshd
ENSCSEG00000018141	snrpd1	81	94.792	ENSCGRG00001021055	-	80	94.737	Cricetulus_griseus_chok1gshd
ENSCSEG00000018141	snrpd1	81	94.792	ENSCGRG00000000490	-	80	94.737	Cricetulus_griseus_crigri
ENSCSEG00000018141	snrpd1	81	71.875	ENSCGRG00000006224	-	84	71.579	Cricetulus_griseus_crigri
ENSCSEG00000018141	snrpd1	100	98.319	ENSCVAG00000000534	snrpd1	100	98.319	Cyprinodon_variegatus
ENSCSEG00000018141	snrpd1	100	97.479	ENSDARG00000011648	snrpd1	100	97.479	Danio_rerio
ENSCSEG00000018141	snrpd1	81	94.792	ENSDNOG00000040310	SNRPD1	80	94.737	Dasypus_novemcinctus
ENSCSEG00000018141	snrpd1	81	94.792	ENSDORG00000008349	Snrpd1	80	94.737	Dipodomys_ordii
ENSCSEG00000018141	snrpd1	79	79.787	FBgn0261933	SmD1	77	79.167	Drosophila_melanogaster
ENSCSEG00000018141	snrpd1	55	93.846	ENSETEG00000011689	SNRPD1	54	93.750	Echinops_telfairi
ENSCSEG00000018141	snrpd1	87	85.437	ENSEBUG00000003170	snrpd1	96	88.660	Eptatretus_burgeri
ENSCSEG00000018141	snrpd1	75	94.382	ENSEASG00005002433	SNRPD1	79	94.318	Equus_asinus_asinus
ENSCSEG00000018141	snrpd1	75	94.382	ENSECAG00000014373	SNRPD1	79	94.318	Equus_caballus
ENSCSEG00000018141	snrpd1	75	94.382	ENSEEUG00000004987	SNRPD1	100	94.382	Erinaceus_europaeus
ENSCSEG00000018141	snrpd1	93	86.486	ENSELUG00000000088	snrpd1	79	96.809	Esox_lucius
ENSCSEG00000018141	snrpd1	81	94.792	ENSFCAG00000012352	SNRPD1	80	94.737	Felis_catus
ENSCSEG00000018141	snrpd1	75	94.382	ENSFALG00000002646	SNRPD1	79	94.318	Ficedula_albicollis
ENSCSEG00000018141	snrpd1	100	97.479	ENSGMOG00000015607	snrpd1	100	97.479	Gadus_morhua
ENSCSEG00000018141	snrpd1	81	94.792	ENSGALG00000041334	SNRPD1	80	94.737	Gallus_gallus
ENSCSEG00000018141	snrpd1	100	98.319	ENSGAFG00000011171	snrpd1	100	98.319	Gambusia_affinis
ENSCSEG00000018141	snrpd1	100	97.479	ENSGACG00000005201	SNRPD1	100	97.479	Gasterosteus_aculeatus
ENSCSEG00000018141	snrpd1	81	94.792	ENSGAGG00000011197	SNRPD1	80	94.737	Gopherus_agassizii
ENSCSEG00000018141	snrpd1	99	81.513	ENSGGOG00000026706	-	79	89.474	Gorilla_gorilla
ENSCSEG00000018141	snrpd1	81	94.792	ENSGGOG00000041053	SNRPD1	80	94.737	Gorilla_gorilla
ENSCSEG00000018141	snrpd1	100	98.319	ENSHBUG00000003236	snrpd1	100	98.319	Haplochromis_burtoni
ENSCSEG00000018141	snrpd1	81	94.792	ENSHGLG00000007152	SNRPD1	80	94.737	Heterocephalus_glaber_female
ENSCSEG00000018141	snrpd1	81	94.792	ENSHGLG00100008618	SNRPD1	80	94.737	Heterocephalus_glaber_male
ENSCSEG00000018141	snrpd1	100	98.319	ENSIPUG00000003576	snrpd1	100	98.319	Ictalurus_punctatus
ENSCSEG00000018141	snrpd1	81	94.792	ENSSTOG00000000485	SNRPD1	80	94.737	Ictidomys_tridecemlineatus
ENSCSEG00000018141	snrpd1	81	94.792	ENSJJAG00000017698	Snrpd1	80	94.737	Jaculus_jaculus
ENSCSEG00000018141	snrpd1	100	98.319	ENSKMAG00000005987	snrpd1	100	98.319	Kryptolebias_marmoratus
ENSCSEG00000018141	snrpd1	100	98.319	ENSLBEG00000003327	snrpd1	100	98.319	Labrus_bergylta
ENSCSEG00000018141	snrpd1	81	94.792	ENSLACG00000001955	SNRPD1	80	94.737	Latimeria_chalumnae
ENSCSEG00000018141	snrpd1	79	93.617	ENSLOCG00000002003	snrpd1	79	93.548	Lepisosteus_oculatus
ENSCSEG00000018141	snrpd1	80	92.632	ENSLAFG00000005819	SNRPD1	80	92.553	Loxodonta_africana
ENSCSEG00000018141	snrpd1	81	94.792	ENSMFAG00000042080	SNRPD1	80	94.737	Macaca_fascicularis
ENSCSEG00000018141	snrpd1	76	94.505	ENSMMUG00000003992	SNRPD1	77	94.444	Macaca_mulatta
ENSCSEG00000018141	snrpd1	81	94.792	ENSMNEG00000041296	SNRPD1	80	94.737	Macaca_nemestrina
ENSCSEG00000018141	snrpd1	81	94.792	ENSMLEG00000028659	SNRPD1	80	94.737	Mandrillus_leucophaeus
ENSCSEG00000018141	snrpd1	100	98.319	ENSMAMG00000012971	snrpd1	100	98.319	Mastacembelus_armatus
ENSCSEG00000018141	snrpd1	100	98.319	ENSMZEG00005004685	snrpd1	100	98.319	Maylandia_zebra
ENSCSEG00000018141	snrpd1	77	94.565	ENSMGAG00000011598	SNRPD1	75	94.505	Meleagris_gallopavo
ENSCSEG00000018141	snrpd1	81	78.125	ENSMAUG00000016502	-	86	77.895	Mesocricetus_auratus
ENSCSEG00000018141	snrpd1	81	78.125	ENSMAUG00000016467	-	86	77.895	Mesocricetus_auratus
ENSCSEG00000018141	snrpd1	82	89.691	ENSMAUG00000006829	-	60	93.478	Mesocricetus_auratus
ENSCSEG00000018141	snrpd1	81	94.792	ENSMICG00000044066	SNRPD1	80	94.737	Microcebus_murinus
ENSCSEG00000018141	snrpd1	81	94.792	ENSMOCG00000017367	Snrpd1	80	94.737	Microtus_ochrogaster
ENSCSEG00000018141	snrpd1	100	98.319	ENSMMOG00000019089	snrpd1	100	98.319	Mola_mola
ENSCSEG00000018141	snrpd1	81	94.792	ENSMODG00000021487	SNRPD1	80	94.737	Monodelphis_domestica
ENSCSEG00000018141	snrpd1	100	98.319	ENSMALG00000014459	snrpd1	100	98.319	Monopterus_albus
ENSCSEG00000018141	snrpd1	81	94.792	MGP_CAROLIEiJ_G0021994	Snrpd1	80	94.737	Mus_caroli
ENSCSEG00000018141	snrpd1	81	94.792	ENSMUSG00000002477	Snrpd1	80	94.737	Mus_musculus
ENSCSEG00000018141	snrpd1	81	94.792	MGP_PahariEiJ_G0018731	Snrpd1	80	94.737	Mus_pahari
ENSCSEG00000018141	snrpd1	81	94.792	MGP_SPRETEiJ_G0022910	Snrpd1	80	94.737	Mus_spretus
ENSCSEG00000018141	snrpd1	79	92.553	ENSMPUG00000005567	-	79	92.473	Mustela_putorius_furo
ENSCSEG00000018141	snrpd1	86	94.118	ENSMPUG00000020041	-	86	94.118	Mustela_putorius_furo
ENSCSEG00000018141	snrpd1	79	93.617	ENSMLUG00000009124	SNRPD1	72	93.548	Myotis_lucifugus
ENSCSEG00000018141	snrpd1	81	94.792	ENSNGAG00000023946	Snrpd1	80	94.737	Nannospalax_galili
ENSCSEG00000018141	snrpd1	79	98.936	ENSNBRG00000012119	snrpd1	86	92.381	Neolamprologus_brichardi
ENSCSEG00000018141	snrpd1	81	91.667	ENSNLEG00000031430	SNRPD1	79	91.579	Nomascus_leucogenys
ENSCSEG00000018141	snrpd1	81	94.792	ENSODEG00000005764	SNRPD1	80	94.737	Octodon_degus
ENSCSEG00000018141	snrpd1	100	98.319	ENSONIG00000002486	snrpd1	100	98.319	Oreochromis_niloticus
ENSCSEG00000018141	snrpd1	82	85.714	ENSOANG00000004638	-	82	85.714	Ornithorhynchus_anatinus
ENSCSEG00000018141	snrpd1	79	92.553	ENSOCUG00000023761	-	79	92.473	Oryctolagus_cuniculus
ENSCSEG00000018141	snrpd1	86	94.118	ENSOCUG00000014399	-	86	94.118	Oryctolagus_cuniculus
ENSCSEG00000018141	snrpd1	94	98.214	ENSORLG00000012516	snrpd1	100	98.214	Oryzias_latipes
ENSCSEG00000018141	snrpd1	100	98.319	ENSORLG00020005743	snrpd1	100	98.319	Oryzias_latipes_hni
ENSCSEG00000018141	snrpd1	100	98.319	ENSORLG00015013402	snrpd1	100	98.319	Oryzias_latipes_hsok
ENSCSEG00000018141	snrpd1	100	98.319	ENSOMEG00000011571	snrpd1	100	98.319	Oryzias_melastigma
ENSCSEG00000018141	snrpd1	81	90.625	ENSOGAG00000007833	SNRPD1	78	92.473	Otolemur_garnettii
ENSCSEG00000018141	snrpd1	81	94.792	ENSOARG00000003413	-	71	94.737	Ovis_aries
ENSCSEG00000018141	snrpd1	81	94.792	ENSPPAG00000042593	SNRPD1	80	94.737	Pan_paniscus
ENSCSEG00000018141	snrpd1	86	67.647	ENSPPRG00000005009	-	82	67.647	Panthera_pardus
ENSCSEG00000018141	snrpd1	81	94.792	ENSPPRG00000002399	SNRPD1	80	94.737	Panthera_pardus
ENSCSEG00000018141	snrpd1	76	94.505	ENSPTIG00000013206	SNRPD1	79	94.444	Panthera_tigris_altaica
ENSCSEG00000018141	snrpd1	93	86.486	ENSPTRG00000009909	SNRPD1	80	94.737	Pan_troglodytes
ENSCSEG00000018141	snrpd1	86	89.216	ENSPTRG00000050159	-	87	89.216	Pan_troglodytes
ENSCSEG00000018141	snrpd1	81	94.792	ENSPANG00000023478	SNRPD1	80	94.737	Papio_anubis
ENSCSEG00000018141	snrpd1	94	97.321	ENSPKIG00000021610	snrpd1	100	97.321	Paramormyrops_kingsleyae
ENSCSEG00000018141	snrpd1	100	96.639	ENSPKIG00000003985	SNRPD1	100	96.639	Paramormyrops_kingsleyae
ENSCSEG00000018141	snrpd1	100	98.319	ENSPMGG00000001862	snrpd1	100	98.319	Periophthalmus_magnuspinnatus
ENSCSEG00000018141	snrpd1	81	94.792	ENSPEMG00000014773	-	80	94.737	Peromyscus_maniculatus_bairdii
ENSCSEG00000018141	snrpd1	86	81.731	ENSPMAG00000003938	-	85	81.731	Petromyzon_marinus
ENSCSEG00000018141	snrpd1	81	94.792	ENSPCIG00000020320	SNRPD1	80	94.737	Phascolarctos_cinereus
ENSCSEG00000018141	snrpd1	92	99.083	ENSPFOG00000012448	SNRPD1	96	99.083	Poecilia_formosa
ENSCSEG00000018141	snrpd1	92	99.083	ENSPLAG00000006738	snrpd1	96	99.083	Poecilia_latipinna
ENSCSEG00000018141	snrpd1	92	99.083	ENSPMEG00000021942	snrpd1	96	99.083	Poecilia_mexicana
ENSCSEG00000018141	snrpd1	100	98.319	ENSPREG00000007094	snrpd1	100	98.319	Poecilia_reticulata
ENSCSEG00000018141	snrpd1	81	94.792	ENSPPYG00000025874	SNRPD1	80	94.737	Pongo_abelii
ENSCSEG00000018141	snrpd1	81	94.792	ENSPCOG00000013327	SNRPD1	80	94.737	Propithecus_coquereli
ENSCSEG00000018141	snrpd1	81	94.792	ENSPVAG00000005511	SNRPD1	64	94.737	Pteropus_vampyrus
ENSCSEG00000018141	snrpd1	79	98.936	ENSPNYG00000010941	snrpd1	51	93.269	Pundamilia_nyererei
ENSCSEG00000018141	snrpd1	100	96.639	ENSPNAG00000017824	snrpd1	100	96.639	Pygocentrus_nattereri
ENSCSEG00000018141	snrpd1	81	94.792	ENSRNOG00000013714	Snrpd1	80	94.737	Rattus_norvegicus
ENSCSEG00000018141	snrpd1	81	94.792	ENSRBIG00000022996	SNRPD1	80	94.737	Rhinopithecus_bieti
ENSCSEG00000018141	snrpd1	81	94.792	ENSRROG00000027640	SNRPD1	80	94.737	Rhinopithecus_roxellana
ENSCSEG00000018141	snrpd1	81	94.792	ENSSBOG00000020998	SNRPD1	80	94.737	Saimiri_boliviensis_boliviensis
ENSCSEG00000018141	snrpd1	81	94.792	ENSSHAG00000011791	SNRPD1	80	94.737	Sarcophilus_harrisii
ENSCSEG00000018141	snrpd1	100	97.479	ENSSFOG00015008809	-	100	97.479	Scleropages_formosus
ENSCSEG00000018141	snrpd1	100	97.479	ENSSFOG00015022253	-	100	97.479	Scleropages_formosus
ENSCSEG00000018141	snrpd1	100	97.479	ENSSMAG00000008765	snrpd1	100	97.479	Scophthalmus_maximus
ENSCSEG00000018141	snrpd1	97	96.552	ENSSDUG00000010521	snrpd1	98	96.552	Seriola_dumerili
ENSCSEG00000018141	snrpd1	100	98.319	ENSSLDG00000011858	snrpd1	100	98.319	Seriola_lalandi_dorsalis
ENSCSEG00000018141	snrpd1	56	95.522	ENSSARG00000004271	SNRPD1	100	95.522	Sorex_araneus
ENSCSEG00000018141	snrpd1	81	94.792	ENSSPUG00000002824	SNRPD1	80	94.737	Sphenodon_punctatus
ENSCSEG00000018141	snrpd1	94	98.214	ENSSPAG00000015229	snrpd1	100	98.214	Stegastes_partitus
ENSCSEG00000018141	snrpd1	81	94.792	ENSSSCG00000003701	SNRPD1	80	94.737	Sus_scrofa
ENSCSEG00000018141	snrpd1	77	94.565	ENSTGUG00000005095	SNRPD1	76	94.505	Taeniopygia_guttata
ENSCSEG00000018141	snrpd1	94	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSCSEG00000018141	snrpd1	67	95.000	ENSTNIG00000001224	snrpd1	76	94.937	Tetraodon_nigroviridis
ENSCSEG00000018141	snrpd1	55	93.846	ENSTBEG00000013776	SNRPD1	73	93.750	Tupaia_belangeri
ENSCSEG00000018141	snrpd1	77	94.565	ENSTTRG00000002654	SNRPD1	79	94.505	Tursiops_truncatus
ENSCSEG00000018141	snrpd1	79	94.681	ENSUAMG00000013431	SNRPD1	100	90.000	Ursus_americanus
ENSCSEG00000018141	snrpd1	81	94.792	ENSUMAG00000019740	SNRPD1	80	94.737	Ursus_maritimus
ENSCSEG00000018141	snrpd1	81	94.792	ENSVPAG00000010056	SNRPD1	64	94.737	Vicugna_pacos
ENSCSEG00000018141	snrpd1	75	94.382	ENSVVUG00000004009	SNRPD1	79	94.318	Vulpes_vulpes
ENSCSEG00000018141	snrpd1	81	92.708	ENSXETG00000027354	snrpd1	80	92.632	Xenopus_tropicalis
ENSCSEG00000018141	snrpd1	100	98.319	ENSXCOG00000020108	snrpd1	100	98.319	Xiphophorus_couchianus
ENSCSEG00000018141	snrpd1	100	98.319	ENSXMAG00000003368	snrpd1	100	98.319	Xiphophorus_maculatus