EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000018215 (Gene tree)
Gene ID: 103396562
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 7671 bases
Position: chr20:11412401-11420071
Accession: 103396562
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000028478	RRM_1	PF00076.22	9e-31	1	2
ENSCSEP00000028478	RRM_1	PF00076.22	9e-31	2	2
ENSCSEP00000028471	RRM_1	PF00076.22	2.2e-29	1	2
ENSCSEP00000028471	RRM_1	PF00076.22	2.2e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000028860	-	4233	XM_008334696	ENSCSEP00000028478	340 (aa)	XP_008332918	UPI000495215A
ENSCSET00000028853	-	4211	XM_008334697	ENSCSEP00000028471	334 (aa)	XP_008332919	UPI0004971B7C

Gene Model

Click here to download ENSCSEG00000018215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000018215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000018215	trnau1apb	60	31.455	ENSCSEG00000014166	-	73	31.188
ENSCSEG00000018215	trnau1apb	98	40.580	ENSCSEG00000006663	trnau1apa	98	40.407
ENSCSEG00000018215	trnau1apb	52	30.556	ENSCSEG00000014331	tia1l	80	30.556
ENSCSEG00000018215	trnau1apb	60	31.455	ENSCSEG00000010018	-	65	31.188

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000018215	trnau1apb	99	69.912	ENSAPOG00000010086	trnau1apb	99	75.516	Acanthochromis_polyacanthus
ENSCSEG00000018215	trnau1apb	100	80.882	ENSACIG00000001863	trnau1apb	99	79.412	Amphilophus_citrinellus
ENSCSEG00000018215	trnau1apb	100	85.673	ENSAOCG00000011891	trnau1apb	99	85.882	Amphiprion_ocellaris
ENSCSEG00000018215	trnau1apb	99	69.527	ENSAPEG00000008029	trnau1apb	99	83.430	Amphiprion_percula
ENSCSEG00000018215	trnau1apb	99	85.882	ENSATEG00000002196	trnau1apb	99	85.882	Anabas_testudineus
ENSCSEG00000018215	trnau1apb	100	80.233	ENSACLG00000003016	trnau1apb	99	78.779	Astatotilapia_calliptera
ENSCSEG00000018215	trnau1apb	97	63.664	ENSAMXG00000001805	trnau1apb	97	63.142	Astyanax_mexicanus
ENSCSEG00000018215	trnau1apb	96	76.292	ENSCVAG00000017866	trnau1apb	99	76.292	Cyprinodon_variegatus
ENSCSEG00000018215	trnau1apb	99	65.000	ENSDARG00000056475	trnau1apb	99	64.412	Danio_rerio
ENSCSEG00000018215	trnau1apb	100	60.933	ENSELUG00000016683	trnau1apb	99	61.383	Esox_lucius
ENSCSEG00000018215	trnau1apb	98	82.596	ENSFHEG00000001267	trnau1apb	99	81.449	Fundulus_heteroclitus
ENSCSEG00000018215	trnau1apb	97	68.116	ENSGMOG00000001160	trnau1apb	98	70.326	Gadus_morhua
ENSCSEG00000018215	trnau1apb	52	94.915	ENSGAFG00000006770	trnau1apb	98	70.746	Gambusia_affinis
ENSCSEG00000018215	trnau1apb	99	78.761	ENSGACG00000014944	trnau1apb	99	78.171	Gasterosteus_aculeatus
ENSCSEG00000018215	trnau1apb	73	38.462	ENSGAGG00000022384	-	78	37.302	Gopherus_agassizii
ENSCSEG00000018215	trnau1apb	100	85.673	ENSHBUG00000018944	trnau1apb	99	84.795	Haplochromis_burtoni
ENSCSEG00000018215	trnau1apb	68	80.603	ENSHCOG00000011350	trnau1apb	78	78.367	Hippocampus_comes
ENSCSEG00000018215	trnau1apb	97	64.371	ENSIPUG00000008843	tsp1l	98	65.861	Ictalurus_punctatus
ENSCSEG00000018215	trnau1apb	65	89.091	ENSKMAG00000010082	trnau1apb	99	81.105	Kryptolebias_marmoratus
ENSCSEG00000018215	trnau1apb	99	84.320	ENSLBEG00000020480	trnau1apb	99	84.024	Labrus_bergylta
ENSCSEG00000018215	trnau1apb	97	52.239	ENSLOCG00000013175	trnau1apb	99	50.146	Lepisosteus_oculatus
ENSCSEG00000018215	trnau1apb	99	84.956	ENSMAMG00000012192	trnau1apb	99	86.431	Mastacembelus_armatus
ENSCSEG00000018215	trnau1apb	100	85.673	ENSMZEG00005014852	trnau1apb	99	84.795	Maylandia_zebra
ENSCSEG00000018215	trnau1apb	73	37.247	ENSMGAG00000003234	-	99	36.179	Meleagris_gallopavo
ENSCSEG00000018215	trnau1apb	96	76.023	ENSMMOG00000021521	trnau1apb	99	74.561	Mola_mola
ENSCSEG00000018215	trnau1apb	100	72.353	ENSMALG00000003772	trnau1apb	99	70.882	Monopterus_albus
ENSCSEG00000018215	trnau1apb	97	81.682	ENSNBRG00000000751	trnau1apb	99	80.480	Neolamprologus_brichardi
ENSCSEG00000018215	trnau1apb	99	75.668	ENSONIG00000016639	trnau1apb	99	73.669	Oreochromis_niloticus
ENSCSEG00000018215	trnau1apb	66	87.111	ENSORLG00000013265	trnau1apb	99	78.779	Oryzias_latipes
ENSCSEG00000018215	trnau1apb	99	79.532	ENSORLG00020004464	trnau1apb	99	79.532	Oryzias_latipes_hni
ENSCSEG00000018215	trnau1apb	99	79.532	ENSORLG00015021098	trnau1apb	99	79.532	Oryzias_latipes_hsok
ENSCSEG00000018215	trnau1apb	66	86.222	ENSOMEG00000016531	trnau1apb	99	80.523	Oryzias_melastigma
ENSCSEG00000018215	trnau1apb	100	57.602	ENSPKIG00000007995	trnau1apb	99	59.538	Paramormyrops_kingsleyae
ENSCSEG00000018215	trnau1apb	73	41.036	ENSPSIG00000004189	-	78	38.554	Pelodiscus_sinensis
ENSCSEG00000018215	trnau1apb	77	78.423	ENSPMGG00000018509	trnau1apb	93	80.083	Periophthalmus_magnuspinnatus
ENSCSEG00000018215	trnau1apb	98	81.121	ENSPFOG00000003938	trnau1apb	99	79.827	Poecilia_formosa
ENSCSEG00000018215	trnau1apb	98	81.121	ENSPLAG00000015480	trnau1apb	99	79.827	Poecilia_latipinna
ENSCSEG00000018215	trnau1apb	98	81.121	ENSPMEG00000012743	trnau1apb	99	79.827	Poecilia_mexicana
ENSCSEG00000018215	trnau1apb	98	80.531	ENSPREG00000015035	trnau1apb	98	80.531	Poecilia_reticulata
ENSCSEG00000018215	trnau1apb	99	79.580	ENSPNYG00000012127	trnau1apb	99	76.163	Pundamilia_nyererei
ENSCSEG00000018215	trnau1apb	97	65.179	ENSPNAG00000019138	trnau1apb	96	64.955	Pygocentrus_nattereri
ENSCSEG00000018215	trnau1apb	97	60.360	ENSSFOG00015014158	trnau1apb	97	62.908	Scleropages_formosus
ENSCSEG00000018215	trnau1apb	97	81.873	ENSSMAG00000001745	trnau1apb	98	85.801	Scophthalmus_maximus
ENSCSEG00000018215	trnau1apb	99	85.924	ENSSDUG00000011109	trnau1apb	100	88.270	Seriola_dumerili
ENSCSEG00000018215	trnau1apb	99	85.924	ENSSLDG00000012947	trnau1apb	100	88.270	Seriola_lalandi_dorsalis
ENSCSEG00000018215	trnau1apb	99	86.471	ENSSPAG00000006917	trnau1apb	99	86.471	Stegastes_partitus
ENSCSEG00000018215	trnau1apb	98	77.910	ENSTRUG00000008608	trnau1apb	99	77.126	Takifugu_rubripes
ENSCSEG00000018215	trnau1apb	99	66.567	ENSTNIG00000000916	trnau1apb	99	65.373	Tetraodon_nigroviridis
ENSCSEG00000018215	trnau1apb	94	71.875	ENSXCOG00000007974	trnau1apb	92	71.875	Xiphophorus_couchianus
ENSCSEG00000018215	trnau1apb	98	80.826	ENSXMAG00000029918	trnau1apb	99	79.539	Xiphophorus_maculatus