EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000018561 (Gene tree)
Gene ID: 103384434
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 11565 bases
Position: chr10:1161487-1173051
Accession: 103384434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000028996	PRP1_N	PF06424.12	9.2e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000029393	-	2748	XM_017036305	ENSCSEP00000028996	915 (aa)	XP_016891794	-

Gene Model

Click here to download ENSCSEG00000018561's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000018561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000018561	prpf6	100	87.141	ENSG00000101161	PRPF6	100	86.716	Homo_sapiens
ENSCSEG00000018561	prpf6	100	92.581	ENSAPOG00000010395	prpf6	96	92.581	Acanthochromis_polyacanthus
ENSCSEG00000018561	prpf6	100	86.306	ENSAMEG00000001916	PRPF6	99	85.881	Ailuropoda_melanoleuca
ENSCSEG00000018561	prpf6	100	92.688	ENSACIG00000019862	prpf6	96	92.688	Amphilophus_citrinellus
ENSCSEG00000018561	prpf6	100	92.688	ENSAOCG00000012988	prpf6	96	92.688	Amphiprion_ocellaris
ENSCSEG00000018561	prpf6	100	85.699	ENSAPEG00000008301	prpf6	100	85.806	Amphiprion_percula
ENSCSEG00000018561	prpf6	100	92.473	ENSATEG00000005581	prpf6	96	92.473	Anabas_testudineus
ENSCSEG00000018561	prpf6	100	87.354	ENSACAG00000006464	PRPF6	95	86.929	Anolis_carolinensis
ENSCSEG00000018561	prpf6	100	87.141	ENSANAG00000012661	PRPF6	100	87.279	Aotus_nancymaae
ENSCSEG00000018561	prpf6	100	92.366	ENSACLG00000025875	prpf6	96	92.366	Astatotilapia_calliptera
ENSCSEG00000018561	prpf6	99	89.581	ENSAMXG00000001929	prpf6	96	89.581	Astyanax_mexicanus
ENSCSEG00000018561	prpf6	100	87.248	ENSBTAG00000011656	PRPF6	100	86.823	Bos_taurus
ENSCSEG00000018561	prpf6	100	87.141	ENSCJAG00000010616	PRPF6	100	86.716	Callithrix_jacchus
ENSCSEG00000018561	prpf6	100	87.354	ENSCAFG00000013165	PRPF6	100	86.929	Canis_familiaris
ENSCSEG00000018561	prpf6	100	87.354	ENSCAFG00020002050	PRPF6	100	86.929	Canis_lupus_dingo
ENSCSEG00000018561	prpf6	100	87.248	ENSCHIG00000018187	PRPF6	100	86.823	Capra_hircus
ENSCSEG00000018561	prpf6	100	87.566	ENSTSYG00000007814	PRPF6	100	87.141	Carlito_syrichta
ENSCSEG00000018561	prpf6	97	86.478	ENSCAPG00000015077	PRPF6	100	85.605	Cavia_aperea
ENSCSEG00000018561	prpf6	100	87.779	ENSCPOG00000007518	PRPF6	100	87.354	Cavia_porcellus
ENSCSEG00000018561	prpf6	100	84.166	ENSCCAG00000024564	PRPF6	100	83.741	Cebus_capucinus
ENSCSEG00000018561	prpf6	100	87.248	ENSCATG00000037473	PRPF6	100	86.823	Cercocebus_atys
ENSCSEG00000018561	prpf6	100	84.166	ENSCLAG00000003854	PRPF6	100	83.741	Chinchilla_lanigera
ENSCSEG00000018561	prpf6	100	82.893	ENSCSAG00000016742	PRPF6	100	82.471	Chlorocebus_sabaeus
ENSCSEG00000018561	prpf6	84	70.244	ENSCHOG00000003315	-	98	69.917	Choloepus_hoffmanni
ENSCSEG00000018561	prpf6	100	87.979	ENSCPBG00000013964	PRPF6	96	87.553	Chrysemys_picta_bellii
ENSCSEG00000018561	prpf6	99	70.179	ENSCING00000008817	-	99	69.968	Ciona_intestinalis
ENSCSEG00000018561	prpf6	100	87.035	ENSCANG00000038230	PRPF6	100	86.610	Colobus_angolensis_palliatus
ENSCSEG00000018561	prpf6	100	87.779	ENSCGRG00001022666	Prpf6	100	87.354	Cricetulus_griseus_chok1gshd
ENSCSEG00000018561	prpf6	100	91.720	ENSCVAG00000010550	prpf6	96	91.720	Cyprinodon_variegatus
ENSCSEG00000018561	prpf6	100	89.186	ENSDARG00000091367	prpf6	99	89.186	Danio_rerio
ENSCSEG00000018561	prpf6	100	87.035	ENSDNOG00000040544	PRPF6	100	86.716	Dasypus_novemcinctus
ENSCSEG00000018561	prpf6	91	86.565	ENSDORG00000005406	Prpf6	100	86.565	Dipodomys_ordii
ENSCSEG00000018561	prpf6	99	68.973	FBgn0036828	CG6841	98	69.081	Drosophila_melanogaster
ENSCSEG00000018561	prpf6	86	88.235	ENSETEG00000004447	PRPF6	85	85.841	Echinops_telfairi
ENSCSEG00000018561	prpf6	99	82.909	ENSEBUG00000008835	prpf6	99	82.484	Eptatretus_burgeri
ENSCSEG00000018561	prpf6	100	87.354	ENSEASG00005023115	PRPF6	100	86.929	Equus_asinus_asinus
ENSCSEG00000018561	prpf6	100	80.234	ENSECAG00000013983	PRPF6	100	82.678	Equus_caballus
ENSCSEG00000018561	prpf6	90	95.833	ENSEEUG00000000180	PRPF6	75	95.833	Erinaceus_europaeus
ENSCSEG00000018561	prpf6	100	89.389	ENSELUG00000001945	prpf6	93	89.389	Esox_lucius
ENSCSEG00000018561	prpf6	100	87.354	ENSFCAG00000001183	PRPF6	100	86.929	Felis_catus
ENSCSEG00000018561	prpf6	100	87.673	ENSFALG00000010326	-	97	87.354	Ficedula_albicollis
ENSCSEG00000018561	prpf6	100	81.915	ENSFALG00000006046	-	97	81.915	Ficedula_albicollis
ENSCSEG00000018561	prpf6	100	86.291	ENSFDAG00000006451	PRPF6	100	86.621	Fukomys_damarensis
ENSCSEG00000018561	prpf6	100	92.366	ENSFHEG00000000560	prpf6	96	92.366	Fundulus_heteroclitus
ENSCSEG00000018561	prpf6	100	88.248	ENSGMOG00000015622	prpf6	99	87.714	Gadus_morhua
ENSCSEG00000018561	prpf6	100	87.460	ENSGALG00000006001	PRPF6	100	87.141	Gallus_gallus
ENSCSEG00000018561	prpf6	100	91.913	ENSGAFG00000021109	prpf6	96	91.913	Gambusia_affinis
ENSCSEG00000018561	prpf6	100	90.064	ENSGACG00000002576	prpf6	99	90.064	Gasterosteus_aculeatus
ENSCSEG00000018561	prpf6	100	88.085	ENSGAGG00000008653	PRPF6	96	87.660	Gopherus_agassizii
ENSCSEG00000018561	prpf6	100	87.141	ENSGGOG00000016876	PRPF6	100	86.716	Gorilla_gorilla
ENSCSEG00000018561	prpf6	100	92.366	ENSHBUG00000004496	prpf6	96	92.366	Haplochromis_burtoni
ENSCSEG00000018561	prpf6	100	87.673	ENSHGLG00000009222	PRPF6	100	87.248	Heterocephalus_glaber_female
ENSCSEG00000018561	prpf6	97	87.459	ENSHGLG00100016600	PRPF6	100	87.023	Heterocephalus_glaber_male
ENSCSEG00000018561	prpf6	100	91.183	ENSHCOG00000011513	prpf6	96	91.183	Hippocampus_comes
ENSCSEG00000018561	prpf6	100	89.412	ENSIPUG00000004912	prpf6	96	89.412	Ictalurus_punctatus
ENSCSEG00000018561	prpf6	100	85.244	ENSSTOG00000002922	PRPF6	100	84.395	Ictidomys_tridecemlineatus
ENSCSEG00000018561	prpf6	100	87.779	ENSJJAG00000000836	Prpf6	100	87.354	Jaculus_jaculus
ENSCSEG00000018561	prpf6	100	92.366	ENSKMAG00000017800	prpf6	96	92.366	Kryptolebias_marmoratus
ENSCSEG00000018561	prpf6	100	91.505	ENSLBEG00000012582	prpf6	96	91.505	Labrus_bergylta
ENSCSEG00000018561	prpf6	100	89.507	ENSLOCG00000004827	prpf6	96	89.079	Lepisosteus_oculatus
ENSCSEG00000018561	prpf6	100	87.035	ENSLAFG00000005272	PRPF6	100	86.610	Loxodonta_africana
ENSCSEG00000018561	prpf6	100	87.035	ENSMFAG00000037542	PRPF6	100	86.610	Macaca_fascicularis
ENSCSEG00000018561	prpf6	100	81.509	ENSMMUG00000015558	PRPF6	98	85.442	Macaca_mulatta
ENSCSEG00000018561	prpf6	100	75.424	ENSMNEG00000045555	PRPF6	100	75.000	Macaca_nemestrina
ENSCSEG00000018561	prpf6	100	92.366	ENSMAMG00000010718	prpf6	96	92.366	Mastacembelus_armatus
ENSCSEG00000018561	prpf6	94	91.429	ENSMZEG00005026539	prpf6	100	91.429	Maylandia_zebra
ENSCSEG00000018561	prpf6	100	91.837	ENSMZEG00005015261	-	99	91.837	Maylandia_zebra
ENSCSEG00000018561	prpf6	97	87.459	ENSMGAG00000006634	PRPF6	100	87.132	Meleagris_gallopavo
ENSCSEG00000018561	prpf6	100	87.779	ENSMAUG00000013969	Prpf6	100	87.354	Mesocricetus_auratus
ENSCSEG00000018561	prpf6	87	85.645	ENSMICG00000017793	PRPF6	98	85.573	Microcebus_murinus
ENSCSEG00000018561	prpf6	100	87.673	ENSMOCG00000001701	Prpf6	100	87.248	Microtus_ochrogaster
ENSCSEG00000018561	prpf6	100	91.613	ENSMMOG00000020419	prpf6	100	91.613	Mola_mola
ENSCSEG00000018561	prpf6	99	88.163	ENSMODG00000017051	PRPF6	99	87.670	Monodelphis_domestica
ENSCSEG00000018561	prpf6	99	92.174	ENSMALG00000000089	prpf6	100	92.174	Monopterus_albus
ENSCSEG00000018561	prpf6	100	81.509	MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	Mus_caroli
ENSCSEG00000018561	prpf6	100	87.779	ENSMUSG00000002455	Prpf6	100	96.296	Mus_musculus
ENSCSEG00000018561	prpf6	100	87.779	MGP_PahariEiJ_G0026262	Prpf6	100	96.296	Mus_pahari
ENSCSEG00000018561	prpf6	100	87.779	MGP_SPRETEiJ_G0025741	Prpf6	100	96.296	Mus_spretus
ENSCSEG00000018561	prpf6	92	86.967	ENSMPUG00000008673	PRPF6	98	86.967	Mustela_putorius_furo
ENSCSEG00000018561	prpf6	100	87.885	ENSNGAG00000003365	Prpf6	100	87.460	Nannospalax_galili
ENSCSEG00000018561	prpf6	100	92.473	ENSNBRG00000015025	prpf6	96	92.473	Neolamprologus_brichardi
ENSCSEG00000018561	prpf6	100	87.035	ENSNLEG00000010208	PRPF6	100	86.610	Nomascus_leucogenys
ENSCSEG00000018561	prpf6	100	82.129	ENSMEUG00000009824	-	90	82.411	Notamacropus_eugenii
ENSCSEG00000018561	prpf6	100	82.040	ENSODEG00000004841	PRPF6	100	81.615	Octodon_degus
ENSCSEG00000018561	prpf6	100	92.581	ENSONIG00000017406	prpf6	96	92.581	Oreochromis_niloticus
ENSCSEG00000018561	prpf6	100	87.991	ENSOANG00000004920	PRPF6	100	87.566	Ornithorhynchus_anatinus
ENSCSEG00000018561	prpf6	99	85.515	ENSOCUG00000014151	PRPF6	100	85.086	Oryctolagus_cuniculus
ENSCSEG00000018561	prpf6	100	91.075	ENSORLG00000009592	prpf6	96	91.075	Oryzias_latipes
ENSCSEG00000018561	prpf6	100	91.183	ENSORLG00020001458	prpf6	96	91.183	Oryzias_latipes_hni
ENSCSEG00000018561	prpf6	100	91.183	ENSORLG00015018762	prpf6	96	91.183	Oryzias_latipes_hsok
ENSCSEG00000018561	prpf6	100	91.505	ENSOMEG00000012174	prpf6	96	91.505	Oryzias_melastigma
ENSCSEG00000018561	prpf6	100	80.573	ENSOGAG00000007573	PRPF6	100	80.149	Otolemur_garnettii
ENSCSEG00000018561	prpf6	100	86.823	ENSOARG00000008776	PRPF6	99	86.397	Ovis_aries
ENSCSEG00000018561	prpf6	100	87.141	ENSPPAG00000008686	PRPF6	100	86.716	Pan_paniscus
ENSCSEG00000018561	prpf6	100	87.354	ENSPPRG00000008497	PRPF6	100	86.929	Panthera_pardus
ENSCSEG00000018561	prpf6	97	87.132	ENSPTIG00000011184	PRPF6	97	86.696	Panthera_tigris_altaica
ENSCSEG00000018561	prpf6	100	87.141	ENSPTRG00000013765	PRPF6	100	86.716	Pan_troglodytes
ENSCSEG00000018561	prpf6	100	87.035	ENSPANG00000024135	PRPF6	100	86.610	Papio_anubis
ENSCSEG00000018561	prpf6	100	89.362	ENSPKIG00000005627	prpf6	99	88.936	Paramormyrops_kingsleyae
ENSCSEG00000018561	prpf6	94	87.302	ENSPSIG00000007717	PRPF6	100	86.848	Pelodiscus_sinensis
ENSCSEG00000018561	prpf6	100	90.430	ENSPMGG00000008925	prpf6	96	89.677	Periophthalmus_magnuspinnatus
ENSCSEG00000018561	prpf6	100	87.779	ENSPEMG00000016036	Prpf6	100	87.354	Peromyscus_maniculatus_bairdii
ENSCSEG00000018561	prpf6	99	83.087	ENSPMAG00000006144	prpf6	99	83.087	Petromyzon_marinus
ENSCSEG00000018561	prpf6	100	88.098	ENSPCIG00000017909	PRPF6	100	87.673	Phascolarctos_cinereus
ENSCSEG00000018561	prpf6	100	91.161	ENSPFOG00000006431	prpf6	96	91.161	Poecilia_formosa
ENSCSEG00000018561	prpf6	100	91.935	ENSPLAG00000005974	prpf6	96	91.935	Poecilia_latipinna
ENSCSEG00000018561	prpf6	100	92.258	ENSPMEG00000009977	prpf6	96	92.258	Poecilia_mexicana
ENSCSEG00000018561	prpf6	100	92.151	ENSPREG00000017993	prpf6	92	92.151	Poecilia_reticulata
ENSCSEG00000018561	prpf6	100	86.610	ENSPPYG00000011256	PRPF6	100	86.185	Pongo_abelii
ENSCSEG00000018561	prpf6	95	91.150	ENSPCAG00000006536	PRPF6	88	91.150	Procavia_capensis
ENSCSEG00000018561	prpf6	100	86.929	ENSPCOG00000016881	PRPF6	100	86.504	Propithecus_coquereli
ENSCSEG00000018561	prpf6	100	81.296	ENSPVAG00000014316	PRPF6	100	80.871	Pteropus_vampyrus
ENSCSEG00000018561	prpf6	100	79.607	ENSPNYG00000001939	prpf6	96	84.372	Pundamilia_nyererei
ENSCSEG00000018561	prpf6	100	89.936	ENSPNAG00000015606	prpf6	96	89.936	Pygocentrus_nattereri
ENSCSEG00000018561	prpf6	100	87.673	ENSRNOG00000051498	Prpf6	100	87.248	Rattus_norvegicus
ENSCSEG00000018561	prpf6	100	87.035	ENSRBIG00000043613	PRPF6	100	86.610	Rhinopithecus_bieti
ENSCSEG00000018561	prpf6	100	84.127	ENSRROG00000040969	PRPF6	100	83.704	Rhinopithecus_roxellana
ENSCSEG00000018561	prpf6	91	81.416	ENSSBOG00000020632	PRPF6	93	79.412	Saimiri_boliviensis_boliviensis
ENSCSEG00000018561	prpf6	100	88.098	ENSSHAG00000016810	PRPF6	100	87.673	Sarcophilus_harrisii
ENSCSEG00000018561	prpf6	99	89.677	ENSSFOG00015020859	prpf6	100	89.247	Scleropages_formosus
ENSCSEG00000018561	prpf6	100	91.720	ENSSMAG00000008112	prpf6	96	91.720	Scophthalmus_maximus
ENSCSEG00000018561	prpf6	100	92.688	ENSSDUG00000016142	prpf6	96	92.688	Seriola_dumerili
ENSCSEG00000018561	prpf6	100	92.688	ENSSLDG00000025283	prpf6	96	92.688	Seriola_lalandi_dorsalis
ENSCSEG00000018561	prpf6	94	86.266	ENSSPUG00000018260	PRPF6	100	85.812	Sphenodon_punctatus
ENSCSEG00000018561	prpf6	100	92.366	ENSSPAG00000015850	prpf6	96	92.366	Stegastes_partitus
ENSCSEG00000018561	prpf6	100	87.035	ENSSSCG00000029119	PRPF6	98	86.374	Sus_scrofa
ENSCSEG00000018561	prpf6	100	87.779	ENSTGUG00000007221	PRPF6	99	87.460	Taeniopygia_guttata
ENSCSEG00000018561	prpf6	100	91.720	ENSTRUG00000002920	prpf6	96	91.720	Takifugu_rubripes
ENSCSEG00000018561	prpf6	100	88.204	ENSTNIG00000017873	prpf6	100	88.204	Tetraodon_nigroviridis
ENSCSEG00000018561	prpf6	89	93.258	ENSTBEG00000005348	PRPF6	85	91.011	Tupaia_belangeri
ENSCSEG00000018561	prpf6	100	87.141	ENSTTRG00000013068	PRPF6	100	86.716	Tursiops_truncatus
ENSCSEG00000018561	prpf6	98	85.870	ENSUMAG00000021631	PRPF6	98	85.435	Ursus_maritimus
ENSCSEG00000018561	prpf6	100	87.354	ENSVVUG00000014948	PRPF6	100	86.929	Vulpes_vulpes
ENSCSEG00000018561	prpf6	100	87.447	ENSXETG00000012054	prpf6	97	87.021	Xenopus_tropicalis
ENSCSEG00000018561	prpf6	100	92.151	ENSXCOG00000008082	prpf6	96	92.151	Xiphophorus_couchianus
ENSCSEG00000018561	prpf6	100	92.151	ENSXMAG00000015581	prpf6	96	92.151	Xiphophorus_maculatus