EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSCSEG00000019055 (Gene tree)
Gene ID: 103393309
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 2170 bases
Position: chr17:11896391-11898560
Accession: 103393309
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000029740	zf-CCCH	PF00642.24	2.1e-20	1	2
ENSCSEP00000029740	zf-CCCH	PF00642.24	2.1e-20	2	2
ENSCSEP00000029758	zf-CCCH	PF00642.24	2.1e-20	1	2
ENSCSEP00000029758	zf-CCCH	PF00642.24	2.1e-20	2	2
ENSCSEP00000029768	zf-CCCH	PF00642.24	4.5e-20	1	2
ENSCSEP00000029768	zf-CCCH	PF00642.24	4.5e-20	2	2
ENSCSEP00000029775	zf-CCCH	PF00642.24	1.5e-15	1	2
ENSCSEP00000029775	zf-CCCH	PF00642.24	1.5e-15	2	2
ENSCSEP00000029775	zf-CCHC	PF00098.23	3.3e-06	1	1
ENSCSEP00000029740	zf-CCHC	PF00098.23	4.4e-06	1	1
ENSCSEP00000029758	zf-CCHC	PF00098.23	4.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000030160	-	1092	XM_008330227	ENSCSEP00000029758	265 (aa)	XP_008328449	UPI00049619A7
ENSCSET00000030141	-	1206	XM_008330228	ENSCSEP00000029740	265 (aa)	XP_008328450	UPI00049619A7
ENSCSET00000030178	-	636	-	ENSCSEP00000029775	211 (aa)	-	-
ENSCSET00000030170	-	1326	-	ENSCSEP00000029768	305 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000019055's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000019055's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000019055	cpsf4	100	84.360	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSCSEG00000019055	cpsf4	67	83.616	ENSAPOG00000004921	cpsf4	100	83.616	Acanthochromis_polyacanthus
ENSCSEG00000019055	cpsf4	100	84.074	ENSAMEG00000006252	CPSF4	100	84.074	Ailuropoda_melanoleuca
ENSCSEG00000019055	cpsf4	100	83.396	ENSACIG00000009248	cpsf4	100	84.528	Amphilophus_citrinellus
ENSCSEG00000019055	cpsf4	100	91.698	ENSAOCG00000019616	cpsf4	100	91.698	Amphiprion_ocellaris
ENSCSEG00000019055	cpsf4	100	91.698	ENSAPEG00000011679	cpsf4	100	91.698	Amphiprion_percula
ENSCSEG00000019055	cpsf4	100	92.509	ENSATEG00000007010	cpsf4	100	92.509	Anabas_testudineus
ENSCSEG00000019055	cpsf4	100	82.593	ENSACAG00000012941	CPSF4	89	82.593	Anolis_carolinensis
ENSCSEG00000019055	cpsf4	100	84.360	ENSANAG00000021360	CPSF4	100	84.360	Aotus_nancymaae
ENSCSEG00000019055	cpsf4	100	93.208	ENSACLG00000010374	cpsf4	100	93.208	Astatotilapia_calliptera
ENSCSEG00000019055	cpsf4	100	86.730	ENSAMXG00000031647	cpsf4	100	86.730	Astyanax_mexicanus
ENSCSEG00000019055	cpsf4	100	80.000	ENSBTAG00000002090	CPSF4	100	80.000	Bos_taurus
ENSCSEG00000019055	cpsf4	100	84.360	ENSCJAG00000015826	CPSF4	100	84.360	Callithrix_jacchus
ENSCSEG00000019055	cpsf4	100	84.434	ENSCAFG00000015036	CPSF4	99	86.228	Canis_familiaris
ENSCSEG00000019055	cpsf4	100	79.259	ENSCAFG00020014462	CPSF4	100	79.259	Canis_lupus_dingo
ENSCSEG00000019055	cpsf4	100	84.834	ENSCHIG00000014313	CPSF4	100	84.834	Capra_hircus
ENSCSEG00000019055	cpsf4	89	74.684	ENSTSYG00000008195	-	100	77.901	Carlito_syrichta
ENSCSEG00000019055	cpsf4	100	85.308	ENSTSYG00000005712	-	100	85.308	Carlito_syrichta
ENSCSEG00000019055	cpsf4	100	76.056	ENSTSYG00000014604	-	100	76.056	Carlito_syrichta
ENSCSEG00000019055	cpsf4	82	82.960	ENSCAPG00000013881	CPSF4	88	82.960	Cavia_aperea
ENSCSEG00000019055	cpsf4	100	84.834	ENSCPOG00000001783	CPSF4	100	84.834	Cavia_porcellus
ENSCSEG00000019055	cpsf4	100	84.360	ENSCCAG00000028291	CPSF4	100	84.360	Cebus_capucinus
ENSCSEG00000019055	cpsf4	100	84.360	ENSCATG00000038440	CPSF4	100	84.360	Cercocebus_atys
ENSCSEG00000019055	cpsf4	100	84.360	ENSCLAG00000007050	CPSF4	100	84.360	Chinchilla_lanigera
ENSCSEG00000019055	cpsf4	100	83.704	ENSCSAG00000017795	CPSF4	100	83.704	Chlorocebus_sabaeus
ENSCSEG00000019055	cpsf4	63	78.313	ENSCPBG00000010269	-	100	78.313	Chrysemys_picta_bellii
ENSCSEG00000019055	cpsf4	80	81.106	ENSCPBG00000020869	CPSF4	100	83.410	Chrysemys_picta_bellii
ENSCSEG00000019055	cpsf4	97	55.469	ENSCING00000021080	-	97	55.469	Ciona_intestinalis
ENSCSEG00000019055	cpsf4	96	53.546	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSCSEG00000019055	cpsf4	100	84.360	ENSCANG00000019384	CPSF4	100	84.360	Colobus_angolensis_palliatus
ENSCSEG00000019055	cpsf4	100	84.834	ENSCGRG00001024184	Cpsf4	100	84.834	Cricetulus_griseus_chok1gshd
ENSCSEG00000019055	cpsf4	100	84.834	ENSCGRG00000013892	Cpsf4	100	84.834	Cricetulus_griseus_crigri
ENSCSEG00000019055	cpsf4	100	88.302	ENSCVAG00000016528	cpsf4	100	88.302	Cyprinodon_variegatus
ENSCSEG00000019055	cpsf4	100	84.871	ENSDARG00000020217	cpsf4	100	84.871	Danio_rerio
ENSCSEG00000019055	cpsf4	100	84.074	ENSDNOG00000006344	CPSF4	100	84.074	Dasypus_novemcinctus
ENSCSEG00000019055	cpsf4	80	83.945	ENSDORG00000000742	Cpsf4	100	83.945	Dipodomys_ordii
ENSCSEG00000019055	cpsf4	100	55.184	FBgn0015621	Clp	99	55.184	Drosophila_melanogaster
ENSCSEG00000019055	cpsf4	73	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSCSEG00000019055	cpsf4	99	66.415	ENSEBUG00000012552	cpsf4	98	66.415	Eptatretus_burgeri
ENSCSEG00000019055	cpsf4	100	80.000	ENSEASG00005002487	CPSF4	100	80.000	Equus_asinus_asinus
ENSCSEG00000019055	cpsf4	100	84.834	ENSECAG00000007525	CPSF4	100	84.834	Equus_caballus
ENSCSEG00000019055	cpsf4	68	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSCSEG00000019055	cpsf4	100	86.765	ENSELUG00000011481	cpsf4	100	86.765	Esox_lucius
ENSCSEG00000019055	cpsf4	100	84.834	ENSFCAG00000015070	CPSF4	100	84.834	Felis_catus
ENSCSEG00000019055	cpsf4	100	79.245	ENSFALG00000013799	CPSF4	100	79.245	Ficedula_albicollis
ENSCSEG00000019055	cpsf4	62	56.395	ENSFALG00000012906	-	100	56.395	Ficedula_albicollis
ENSCSEG00000019055	cpsf4	90	83.607	ENSFDAG00000014092	CPSF4	100	84.324	Fukomys_damarensis
ENSCSEG00000019055	cpsf4	100	88.302	ENSFHEG00000010880	cpsf4	100	88.302	Fundulus_heteroclitus
ENSCSEG00000019055	cpsf4	100	83.395	ENSGMOG00000002330	cpsf4	100	83.395	Gadus_morhua
ENSCSEG00000019055	cpsf4	100	79.623	ENSGALG00000004714	CPSF4	100	79.623	Gallus_gallus
ENSCSEG00000019055	cpsf4	99	37.097	ENSGALG00000004441	-	98	37.097	Gallus_gallus
ENSCSEG00000019055	cpsf4	100	87.925	ENSGAFG00000010580	cpsf4	100	87.925	Gambusia_affinis
ENSCSEG00000019055	cpsf4	100	85.448	ENSGACG00000007792	cpsf4	100	85.448	Gasterosteus_aculeatus
ENSCSEG00000019055	cpsf4	69	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSCSEG00000019055	cpsf4	100	82.222	ENSGAGG00000021835	CPSF4	100	84.074	Gopherus_agassizii
ENSCSEG00000019055	cpsf4	100	84.360	ENSGGOG00000015131	CPSF4	100	84.360	Gorilla_gorilla
ENSCSEG00000019055	cpsf4	100	93.208	ENSHBUG00000013699	cpsf4	100	93.208	Haplochromis_burtoni
ENSCSEG00000019055	cpsf4	100	84.360	ENSHGLG00000017150	CPSF4	100	84.360	Heterocephalus_glaber_female
ENSCSEG00000019055	cpsf4	100	64.929	ENSHGLG00100017302	-	100	64.929	Heterocephalus_glaber_male
ENSCSEG00000019055	cpsf4	83	81.818	ENSHGLG00100009215	-	100	81.818	Heterocephalus_glaber_male
ENSCSEG00000019055	cpsf4	100	87.970	ENSHCOG00000004397	cpsf4	100	87.970	Hippocampus_comes
ENSCSEG00000019055	cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	84.871	Ictalurus_punctatus
ENSCSEG00000019055	cpsf4	100	84.834	ENSSTOG00000001688	CPSF4	100	84.834	Ictidomys_tridecemlineatus
ENSCSEG00000019055	cpsf4	100	84.360	ENSJJAG00000019426	Cpsf4	100	84.360	Jaculus_jaculus
ENSCSEG00000019055	cpsf4	100	89.057	ENSKMAG00000015642	cpsf4	100	89.057	Kryptolebias_marmoratus
ENSCSEG00000019055	cpsf4	100	83.395	ENSLACG00000010938	CPSF4	100	83.395	Latimeria_chalumnae
ENSCSEG00000019055	cpsf4	100	59.925	ENSLACG00000018470	-	100	59.925	Latimeria_chalumnae
ENSCSEG00000019055	cpsf4	100	80.741	ENSLOCG00000004814	cpsf4	100	82.156	Lepisosteus_oculatus
ENSCSEG00000019055	cpsf4	100	84.444	ENSLAFG00000000159	CPSF4	100	85.714	Loxodonta_africana
ENSCSEG00000019055	cpsf4	100	84.360	ENSMFAG00000001462	CPSF4	100	84.360	Macaca_fascicularis
ENSCSEG00000019055	cpsf4	100	84.360	ENSMMUG00000019191	CPSF4	100	84.360	Macaca_mulatta
ENSCSEG00000019055	cpsf4	100	84.360	ENSMNEG00000032306	CPSF4	100	84.360	Macaca_nemestrina
ENSCSEG00000019055	cpsf4	100	84.360	ENSMLEG00000034721	CPSF4	100	84.360	Mandrillus_leucophaeus
ENSCSEG00000019055	cpsf4	100	90.226	ENSMAMG00000006244	cpsf4	100	90.226	Mastacembelus_armatus
ENSCSEG00000019055	cpsf4	100	93.208	ENSMZEG00005007515	cpsf4	100	93.208	Maylandia_zebra
ENSCSEG00000019055	cpsf4	87	77.922	ENSMGAG00000004235	CPSF4	100	77.922	Meleagris_gallopavo
ENSCSEG00000019055	cpsf4	100	84.834	ENSMAUG00000021253	Cpsf4	100	84.834	Mesocricetus_auratus
ENSCSEG00000019055	cpsf4	100	84.360	ENSMICG00000017429	CPSF4	100	84.360	Microcebus_murinus
ENSCSEG00000019055	cpsf4	100	84.834	ENSMOCG00000014901	Cpsf4	100	84.834	Microtus_ochrogaster
ENSCSEG00000019055	cpsf4	100	91.353	ENSMMOG00000001813	cpsf4	100	91.353	Mola_mola
ENSCSEG00000019055	cpsf4	100	84.815	ENSMODG00000001367	CPSF4	100	84.815	Monodelphis_domestica
ENSCSEG00000019055	cpsf4	100	90.226	ENSMALG00000012611	cpsf4	100	90.226	Monopterus_albus
ENSCSEG00000019055	cpsf4	100	84.834	MGP_CAROLIEiJ_G0028012	Cpsf4	100	84.834	Mus_caroli
ENSCSEG00000019055	cpsf4	100	84.834	ENSMUSG00000029625	Cpsf4	100	84.834	Mus_musculus
ENSCSEG00000019055	cpsf4	100	84.834	MGP_PahariEiJ_G0024581	Cpsf4	100	84.834	Mus_pahari
ENSCSEG00000019055	cpsf4	100	84.360	MGP_SPRETEiJ_G0029013	Cpsf4	100	84.360	Mus_spretus
ENSCSEG00000019055	cpsf4	100	84.074	ENSMPUG00000016508	CPSF4	100	84.074	Mustela_putorius_furo
ENSCSEG00000019055	cpsf4	87	78.355	ENSMLUG00000010980	CPSF4	100	78.355	Myotis_lucifugus
ENSCSEG00000019055	cpsf4	100	84.834	ENSNGAG00000001567	Cpsf4	100	84.834	Nannospalax_galili
ENSCSEG00000019055	cpsf4	91	92.116	ENSNBRG00000003943	cpsf4	98	92.116	Neolamprologus_brichardi
ENSCSEG00000019055	cpsf4	100	84.360	ENSNLEG00000011074	CPSF4	100	84.360	Nomascus_leucogenys
ENSCSEG00000019055	cpsf4	100	84.815	ENSMEUG00000006955	CPSF4	100	84.815	Notamacropus_eugenii
ENSCSEG00000019055	cpsf4	100	83.333	ENSOPRG00000013663	CPSF4	100	83.333	Ochotona_princeps
ENSCSEG00000019055	cpsf4	98	67.816	ENSODEG00000018283	-	91	67.816	Octodon_degus
ENSCSEG00000019055	cpsf4	100	84.834	ENSODEG00000011181	-	100	84.834	Octodon_degus
ENSCSEG00000019055	cpsf4	100	64.945	ENSODEG00000009779	-	100	64.945	Octodon_degus
ENSCSEG00000019055	cpsf4	100	93.208	ENSONIG00000008495	cpsf4	100	93.208	Oreochromis_niloticus
ENSCSEG00000019055	cpsf4	87	83.830	ENSOANG00000007729	CPSF4	100	83.830	Ornithorhynchus_anatinus
ENSCSEG00000019055	cpsf4	100	52.878	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSCSEG00000019055	cpsf4	100	83.333	ENSOCUG00000002437	CPSF4	70	83.333	Oryctolagus_cuniculus
ENSCSEG00000019055	cpsf4	100	89.811	ENSORLG00000022798	cpsf4	100	89.811	Oryzias_latipes
ENSCSEG00000019055	cpsf4	100	89.811	ENSORLG00020008548	cpsf4	100	89.811	Oryzias_latipes_hni
ENSCSEG00000019055	cpsf4	100	89.434	ENSORLG00015019575	cpsf4	100	89.434	Oryzias_latipes_hsok
ENSCSEG00000019055	cpsf4	100	89.434	ENSOMEG00000005176	cpsf4	100	89.434	Oryzias_melastigma
ENSCSEG00000019055	cpsf4	100	83.704	ENSOGAG00000010884	CPSF4	100	83.704	Otolemur_garnettii
ENSCSEG00000019055	cpsf4	100	74.088	ENSOARG00000018668	CPSF4	100	74.088	Ovis_aries
ENSCSEG00000019055	cpsf4	100	84.360	ENSPPAG00000043355	CPSF4	100	84.360	Pan_paniscus
ENSCSEG00000019055	cpsf4	100	84.834	ENSPPRG00000003134	CPSF4	100	84.834	Panthera_pardus
ENSCSEG00000019055	cpsf4	90	83.951	ENSPTIG00000005604	CPSF4	90	83.951	Panthera_tigris_altaica
ENSCSEG00000019055	cpsf4	100	84.360	ENSPTRG00000019453	CPSF4	100	84.360	Pan_troglodytes
ENSCSEG00000019055	cpsf4	100	84.360	ENSPANG00000023123	CPSF4	100	84.360	Papio_anubis
ENSCSEG00000019055	cpsf4	100	83.212	ENSPKIG00000014278	cpsf4	100	83.212	Paramormyrops_kingsleyae
ENSCSEG00000019055	cpsf4	81	59.813	ENSPSIG00000018198	-	100	59.813	Pelodiscus_sinensis
ENSCSEG00000019055	cpsf4	80	80.645	ENSPSIG00000011229	CPSF4	100	82.949	Pelodiscus_sinensis
ENSCSEG00000019055	cpsf4	100	78.868	ENSPMGG00000017735	cpsf4	100	78.868	Periophthalmus_magnuspinnatus
ENSCSEG00000019055	cpsf4	100	84.834	ENSPEMG00000004508	Cpsf4	100	84.834	Peromyscus_maniculatus_bairdii
ENSCSEG00000019055	cpsf4	100	84.815	ENSPCIG00000024776	CPSF4	100	84.815	Phascolarctos_cinereus
ENSCSEG00000019055	cpsf4	100	87.925	ENSPFOG00000014912	cpsf4	100	87.925	Poecilia_formosa
ENSCSEG00000019055	cpsf4	100	80.755	ENSPLAG00000009599	cpsf4	100	80.755	Poecilia_latipinna
ENSCSEG00000019055	cpsf4	100	87.925	ENSPMEG00000009790	cpsf4	100	87.925	Poecilia_mexicana
ENSCSEG00000019055	cpsf4	100	87.547	ENSPREG00000018166	cpsf4	100	87.547	Poecilia_reticulata
ENSCSEG00000019055	cpsf4	87	82.979	ENSPPYG00000017378	CPSF4	100	82.979	Pongo_abelii
ENSCSEG00000019055	cpsf4	100	84.444	ENSPCAG00000001892	CPSF4	100	84.444	Procavia_capensis
ENSCSEG00000019055	cpsf4	100	84.834	ENSPCOG00000012771	CPSF4	100	84.834	Propithecus_coquereli
ENSCSEG00000019055	cpsf4	100	78.889	ENSPVAG00000007531	CPSF4	100	78.889	Pteropus_vampyrus
ENSCSEG00000019055	cpsf4	100	93.208	ENSPNYG00000018559	cpsf4	100	93.208	Pundamilia_nyererei
ENSCSEG00000019055	cpsf4	100	85.926	ENSPNAG00000003736	cpsf4	100	85.926	Pygocentrus_nattereri
ENSCSEG00000019055	cpsf4	100	84.834	ENSRNOG00000000985	Cpsf4	100	84.834	Rattus_norvegicus
ENSCSEG00000019055	cpsf4	87	83.404	ENSRBIG00000033886	CPSF4	100	84.091	Rhinopithecus_bieti
ENSCSEG00000019055	cpsf4	100	84.360	ENSRROG00000040431	CPSF4	100	84.360	Rhinopithecus_roxellana
ENSCSEG00000019055	cpsf4	100	84.360	ENSSBOG00000020493	CPSF4	100	84.360	Saimiri_boliviensis_boliviensis
ENSCSEG00000019055	cpsf4	100	84.815	ENSSHAG00000011533	CPSF4	100	84.815	Sarcophilus_harrisii
ENSCSEG00000019055	cpsf4	100	81.884	ENSSFOG00015007883	cpsf4	100	81.522	Scleropages_formosus
ENSCSEG00000019055	cpsf4	100	84.211	ENSSMAG00000006374	cpsf4	100	84.211	Scophthalmus_maximus
ENSCSEG00000019055	cpsf4	100	92.481	ENSSDUG00000018887	cpsf4	100	92.481	Seriola_dumerili
ENSCSEG00000019055	cpsf4	100	92.481	ENSSLDG00000019078	cpsf4	100	92.481	Seriola_lalandi_dorsalis
ENSCSEG00000019055	cpsf4	87	83.404	ENSSARG00000012416	CPSF4	100	83.404	Sorex_araneus
ENSCSEG00000019055	cpsf4	100	82.963	ENSSPUG00000003549	CPSF4	100	82.963	Sphenodon_punctatus
ENSCSEG00000019055	cpsf4	96	59.055	ENSSPUG00000014803	-	97	59.055	Sphenodon_punctatus
ENSCSEG00000019055	cpsf4	100	86.038	ENSSPAG00000006174	cpsf4	100	86.038	Stegastes_partitus
ENSCSEG00000019055	cpsf4	100	79.623	ENSSSCG00000026896	CPSF4	100	79.623	Sus_scrofa
ENSCSEG00000019055	cpsf4	100	78.277	ENSTGUG00000007552	CPSF4	100	78.277	Taeniopygia_guttata
ENSCSEG00000019055	cpsf4	100	87.170	ENSTRUG00000024220	cpsf4	100	87.170	Takifugu_rubripes
ENSCSEG00000019055	cpsf4	100	87.547	ENSTNIG00000006265	cpsf4	100	87.547	Tetraodon_nigroviridis
ENSCSEG00000019055	cpsf4	87	74.894	ENSTBEG00000011406	CPSF4	100	74.894	Tupaia_belangeri
ENSCSEG00000019055	cpsf4	79	95.455	ENSTTRG00000003007	CPSF4	79	95.455	Tursiops_truncatus
ENSCSEG00000019055	cpsf4	92	78.601	ENSUAMG00000008051	CPSF4	73	91.053	Ursus_americanus
ENSCSEG00000019055	cpsf4	100	80.000	ENSUMAG00000009474	CPSF4	100	80.000	Ursus_maritimus
ENSCSEG00000019055	cpsf4	100	80.000	ENSVVUG00000008824	CPSF4	100	80.000	Vulpes_vulpes
ENSCSEG00000019055	cpsf4	99	57.194	ENSXETG00000004641	cpsf4l	99	57.194	Xenopus_tropicalis
ENSCSEG00000019055	cpsf4	100	77.778	ENSXETG00000009892	cpsf4	100	78.571	Xenopus_tropicalis
ENSCSEG00000019055	cpsf4	100	88.626	ENSXCOG00000016040	cpsf4	100	88.626	Xiphophorus_couchianus
ENSCSEG00000019055	cpsf4	100	87.925	ENSXMAG00000024670	cpsf4	100	87.925	Xiphophorus_maculatus