EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000019209 (Gene tree)
Gene ID: 103397816
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC103397816
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Plus strand
Length: 10608 bases
Position: chrZ:8132109-8142716
Accession: 103397816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	1	6
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	2	6
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	3	6
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	4	6
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	5	6
ENSCSEP00000029966	RRM_1	PF00076.22	7.3e-69	6	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	1	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	2	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	3	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	4	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	5	6
ENSCSEP00000029961	RRM_1	PF00076.22	8.7e-69	6	6
ENSCSEP00000029975	RRM_1	PF00076.22	4.1e-47	1	4
ENSCSEP00000029975	RRM_1	PF00076.22	4.1e-47	2	4
ENSCSEP00000029975	RRM_1	PF00076.22	4.1e-47	3	4
ENSCSEP00000029975	RRM_1	PF00076.22	4.1e-47	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000030370	-	2998	XM_008336208	ENSCSEP00000029966	917 (aa)	XP_008334430	UPI000497D120
ENSCSET00000030379	-	1980	-	ENSCSEP00000029975	659 (aa)	-	-
ENSCSET00000030364	-	2808	-	ENSCSEP00000029961	935 (aa)	-	-

Gene Model

Click here to download ENSCSEG00000019209's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000019209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000019209	-	90	56.757	ENSCSEG00000014207	hnrnph3	94	56.579
ENSCSEG00000019209	-	90	45.455	ENSCSEG00000015891	hnrnph1	80	45.455
ENSCSEG00000019209	-	91	37.209	ENSCSEG00000011686	esrp2	68	36.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000019209	-	99	60.681	ENSAPOG00000012487	grsf1	99	58.514	Acanthochromis_polyacanthus
ENSCSEG00000019209	-	93	65.455	ENSACIG00000005871	grsf1	99	65.455	Amphilophus_citrinellus
ENSCSEG00000019209	-	99	59.133	ENSAOCG00000017462	-	99	59.133	Amphiprion_ocellaris
ENSCSEG00000019209	-	99	59.451	ENSAPEG00000007240	-	99	59.451	Amphiprion_percula
ENSCSEG00000019209	-	99	64.198	ENSATEG00000007185	grsf1	99	63.580	Anabas_testudineus
ENSCSEG00000019209	-	99	57.391	ENSACLG00000003685	-	99	57.391	Astatotilapia_calliptera
ENSCSEG00000019209	-	92	47.323	ENSAMXG00000012270	grsf1	98	47.389	Astyanax_mexicanus
ENSCSEG00000019209	-	95	58.589	ENSCVAG00000004476	grsf1	99	58.589	Cyprinodon_variegatus
ENSCSEG00000019209	-	98	45.955	ENSDARG00000053021	grsf1	95	45.955	Danio_rerio
ENSCSEG00000019209	-	100	44.377	ENSFHEG00000013358	-	100	45.289	Fundulus_heteroclitus
ENSCSEG00000019209	-	73	62.162	ENSGMOG00000014047	grsf1	82	65.455	Gadus_morhua
ENSCSEG00000019209	-	99	56.442	ENSGAFG00000004496	grsf1	99	56.442	Gambusia_affinis
ENSCSEG00000019209	-	90	55.193	ENSGACG00000014447	grsf1	99	54.848	Gasterosteus_aculeatus
ENSCSEG00000019209	-	99	60.615	ENSHBUG00000006284	grsf1	99	60.350	Haplochromis_burtoni
ENSCSEG00000019209	-	99	56.748	ENSHCOG00000007715	-	99	56.748	Hippocampus_comes
ENSCSEG00000019209	-	92	48.023	ENSIPUG00000010533	grsf1	88	47.175	Ictalurus_punctatus
ENSCSEG00000019209	-	100	52.853	ENSKMAG00000004528	grsf1	99	53.049	Kryptolebias_marmoratus
ENSCSEG00000019209	-	90	52.862	ENSLBEG00000018100	grsf1	93	52.862	Labrus_bergylta
ENSCSEG00000019209	-	99	63.110	ENSMAMG00000002627	grsf1	99	62.195	Mastacembelus_armatus
ENSCSEG00000019209	-	99	57.391	ENSMZEG00005020633	-	99	57.391	Maylandia_zebra
ENSCSEG00000019209	-	99	62.662	ENSMMOG00000014231	grsf1	99	62.013	Mola_mola
ENSCSEG00000019209	-	99	62.577	ENSMALG00000000251	grsf1	99	62.270	Monopterus_albus
ENSCSEG00000019209	-	99	59.627	ENSNBRG00000017774	grsf1	96	59.006	Neolamprologus_brichardi
ENSCSEG00000019209	-	99	62.840	ENSONIG00000014119	grsf1	99	62.840	Oreochromis_niloticus
ENSCSEG00000019209	-	99	62.541	ENSORLG00000030211	grsf1	99	61.564	Oryzias_latipes
ENSCSEG00000019209	-	93	59.779	ENSORLG00020014383	grsf1	99	58.410	Oryzias_latipes_hni
ENSCSEG00000019209	-	99	61.564	ENSORLG00015006520	grsf1	99	62.376	Oryzias_latipes_hsok
ENSCSEG00000019209	-	89	62.397	ENSOMEG00000009181	grsf1	100	62.305	Oryzias_melastigma
ENSCSEG00000019209	-	92	51.840	ENSPKIG00000019432	grsf1	80	51.553	Paramormyrops_kingsleyae
ENSCSEG00000019209	-	84	66.184	ENSPMGG00000013654	grsf1	95	66.184	Periophthalmus_magnuspinnatus
ENSCSEG00000019209	-	99	55.389	ENSPFOG00000006122	grsf1	99	55.689	Poecilia_formosa
ENSCSEG00000019209	-	99	56.364	ENSPLAG00000020977	grsf1	99	54.942	Poecilia_latipinna
ENSCSEG00000019209	-	99	55.389	ENSPMEG00000012485	grsf1	99	55.689	Poecilia_mexicana
ENSCSEG00000019209	-	99	54.819	ENSPREG00000013383	grsf1	99	53.468	Poecilia_reticulata
ENSCSEG00000019209	-	99	59.763	ENSPNYG00000005379	grsf1	99	59.184	Pundamilia_nyererei
ENSCSEG00000019209	-	87	61.881	ENSPNAG00000014912	grsf1	89	61.881	Pygocentrus_nattereri
ENSCSEG00000019209	-	93	42.767	ENSSFOG00015014620	grsf1	87	42.453	Scleropages_formosus
ENSCSEG00000019209	-	100	61.631	ENSSMAG00000014181	grsf1	91	61.027	Scophthalmus_maximus
ENSCSEG00000019209	-	92	68.000	ENSSDUG00000009397	-	98	74.286	Seriola_dumerili
ENSCSEG00000019209	-	92	72.539	ENSSLDG00000025494	grsf1	98	72.539	Seriola_lalandi_dorsalis
ENSCSEG00000019209	-	100	58.232	ENSSPAG00000023296	grsf1	100	58.232	Stegastes_partitus
ENSCSEG00000019209	-	99	56.305	ENSTRUG00000015354	grsf1	100	57.500	Takifugu_rubripes
ENSCSEG00000019209	-	81	67.000	ENSTNIG00000015350	-	95	67.000	Tetraodon_nigroviridis
ENSCSEG00000019209	-	100	56.269	ENSXMAG00000029710	grsf1	100	56.269	Xiphophorus_maculatus