EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSEG00000019652 (Gene tree)
Gene ID: 103387983
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase
Gene Type: protein_coding
Species: Cynoglossus_semilaevis
Status: putative
Strand: Minus strand
Length: 9914 bases
Position: chr13:1711933-1721846
Accession: 103387983
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSEP00000030698	tRNA-synt_1g	PF09334.11	1.2e-12	1	1
ENSCSEP00000030698	Anticodon_1	PF08264.13	1.2e-32	1	1
ENSCSEP00000030698	tRNA-synt_1	PF00133.22	3e-205	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSET00000031104	-	3687	XM_008322817	ENSCSEP00000030698	1228 (aa)	XP_008321039	-

Gene Model

Click here to download ENSCSEG00000019652's gene model file

Pathways

Pathway ID	Pathway Name	Source
csem00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSCSEG00000019652's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSEG00000019652	vars	74	55.814	ENSCSEG00000015432	vars2	90	58.270

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSEG00000019652	vars	100	64.506	ENSG00000204394	VARS	99	71.692	Homo_sapiens
ENSCSEG00000019652	vars	98	83.884	ENSAPOG00000020691	vars	99	83.884	Acanthochromis_polyacanthus
ENSCSEG00000019652	vars	98	83.884	ENSAPOG00000020921	vars	99	83.884	Acanthochromis_polyacanthus
ENSCSEG00000019652	vars	100	64.139	ENSAMEG00000006417	VARS	100	64.060	Ailuropoda_melanoleuca
ENSCSEG00000019652	vars	100	84.382	ENSACIG00000013752	vars	100	84.382	Amphilophus_citrinellus
ENSCSEG00000019652	vars	100	83.827	ENSAOCG00000002447	vars	100	83.827	Amphiprion_ocellaris
ENSCSEG00000019652	vars	100	83.516	ENSAPEG00000010638	vars	99	83.516	Amphiprion_percula
ENSCSEG00000019652	vars	100	83.974	ENSATEG00000020219	vars	100	83.894	Anabas_testudineus
ENSCSEG00000019652	vars	89	67.979	ENSACAG00000029133	-	99	69.204	Anolis_carolinensis
ENSCSEG00000019652	vars	100	64.427	ENSANAG00000015453	VARS	100	64.585	Aotus_nancymaae
ENSCSEG00000019652	vars	100	82.929	ENSACLG00000025699	vars	97	82.929	Astatotilapia_calliptera
ENSCSEG00000019652	vars	96	79.275	ENSAMXG00000017716	vars	96	79.275	Astyanax_mexicanus
ENSCSEG00000019652	vars	100	64.506	ENSBTAG00000005631	VARS	100	64.664	Bos_taurus
ENSCSEG00000019652	vars	100	64.032	ENSCJAG00000002604	VARS	100	64.190	Callithrix_jacchus
ENSCSEG00000019652	vars	100	63.786	ENSCAFG00000000636	VARS	100	63.708	Canis_familiaris
ENSCSEG00000019652	vars	93	65.046	ENSCAFG00020020790	VARS	96	64.962	Canis_lupus_dingo
ENSCSEG00000019652	vars	100	64.506	ENSCHIG00000011008	VARS	100	64.664	Capra_hircus
ENSCSEG00000019652	vars	100	64.111	ENSTSYG00000001567	VARS	100	64.269	Carlito_syrichta
ENSCSEG00000019652	vars	90	67.634	ENSCAPG00000013736	VARS	98	67.282	Cavia_aperea
ENSCSEG00000019652	vars	100	64.297	ENSCPOG00000000870	VARS	100	63.981	Cavia_porcellus
ENSCSEG00000019652	vars	100	64.585	ENSCCAG00000035656	VARS	100	64.506	Cebus_capucinus
ENSCSEG00000019652	vars	100	64.743	ENSCATG00000022394	VARS	100	64.664	Cercocebus_atys
ENSCSEG00000019652	vars	89	65.997	ENSCLAG00000009470	VARS	92	65.559	Chinchilla_lanigera
ENSCSEG00000019652	vars	100	64.427	ENSCSAG00000008784	VARS	100	64.348	Chlorocebus_sabaeus
ENSCSEG00000019652	vars	79	74.203	ENSCPBG00000007943	VARS	96	74.203	Chrysemys_picta_bellii
ENSCSEG00000019652	vars	100	64.585	ENSCANG00000033570	VARS	100	64.506	Colobus_angolensis_palliatus
ENSCSEG00000019652	vars	100	64.427	ENSCGRG00001005686	Vars	100	64.585	Cricetulus_griseus_chok1gshd
ENSCSEG00000019652	vars	93	62.762	ENSCGRG00000013352	Vars	78	62.929	Cricetulus_griseus_crigri
ENSCSEG00000019652	vars	100	82.942	ENSCVAG00000022398	vars	100	83.177	Cyprinodon_variegatus
ENSCSEG00000019652	vars	100	79.702	ENSDARG00000044575	vars	100	79.859	Danio_rerio
ENSCSEG00000019652	vars	84	69.905	ENSDORG00000016433	Vars	94	70.000	Dipodomys_ordii
ENSCSEG00000019652	vars	68	73.056	ENSETEG00000003824	VARS	77	73.056	Echinops_telfairi
ENSCSEG00000019652	vars	58	63.462	ENSEBUG00000004637	vars	100	63.462	Eptatretus_burgeri
ENSCSEG00000019652	vars	52	71.304	ENSEBUG00000007086	vars	82	71.304	Eptatretus_burgeri
ENSCSEG00000019652	vars	100	64.506	ENSEASG00005015673	VARS	100	64.664	Equus_asinus_asinus
ENSCSEG00000019652	vars	100	64.534	ENSECAG00000014620	VARS	100	64.692	Equus_caballus
ENSCSEG00000019652	vars	71	70.426	ENSEEUG00000004116	VARS	73	70.426	Erinaceus_europaeus
ENSCSEG00000019652	vars	100	79.938	ENSELUG00000006550	vars	97	79.859	Esox_lucius
ENSCSEG00000019652	vars	100	64.185	ENSFCAG00000004510	VARS	100	64.185	Felis_catus
ENSCSEG00000019652	vars	83	70.547	ENSFDAG00000011401	VARS	100	70.040	Fukomys_damarensis
ENSCSEG00000019652	vars	100	83.293	ENSFHEG00000010672	vars	100	83.293	Fundulus_heteroclitus
ENSCSEG00000019652	vars	100	77.336	ENSGMOG00000014908	vars	100	77.336	Gadus_morhua
ENSCSEG00000019652	vars	100	82.445	ENSGAFG00000021630	vars	100	82.680	Gambusia_affinis
ENSCSEG00000019652	vars	93	83.179	ENSGACG00000009601	vars	100	79.624	Gasterosteus_aculeatus
ENSCSEG00000019652	vars	100	64.743	ENSGGOG00000011364	VARS	100	64.664	Gorilla_gorilla
ENSCSEG00000019652	vars	100	82.929	ENSHBUG00000017151	vars	97	82.929	Haplochromis_burtoni
ENSCSEG00000019652	vars	100	63.528	ENSHGLG00000011646	VARS	100	63.766	Heterocephalus_glaber_female
ENSCSEG00000019652	vars	93	60.935	ENSHGLG00100018062	VARS	99	60.935	Heterocephalus_glaber_male
ENSCSEG00000019652	vars	99	79.670	ENSHCOG00000012198	vars	99	79.670	Hippocampus_comes
ENSCSEG00000019652	vars	100	79.407	ENSIPUG00000005218	vars	100	79.535	Ictalurus_punctatus
ENSCSEG00000019652	vars	100	64.613	ENSSTOG00000013112	VARS	100	64.692	Ictidomys_tridecemlineatus
ENSCSEG00000019652	vars	100	64.054	ENSJJAG00000019749	-	100	63.658	Jaculus_jaculus
ENSCSEG00000019652	vars	100	51.672	ENSJJAG00000015343	-	98	53.571	Jaculus_jaculus
ENSCSEG00000019652	vars	100	83.013	ENSKMAG00000009455	vars	100	83.093	Kryptolebias_marmoratus
ENSCSEG00000019652	vars	100	86.513	ENSLBEG00000010341	vars	100	83.683	Labrus_bergylta
ENSCSEG00000019652	vars	94	63.531	ENSLACG00000015232	VARS	99	64.934	Latimeria_chalumnae
ENSCSEG00000019652	vars	100	72.082	ENSLOCG00000004240	vars	100	72.161	Lepisosteus_oculatus
ENSCSEG00000019652	vars	100	64.161	ENSLAFG00000023090	VARS	100	64.241	Loxodonta_africana
ENSCSEG00000019652	vars	100	64.585	ENSMFAG00000001032	VARS	100	64.506	Macaca_fascicularis
ENSCSEG00000019652	vars	100	64.585	ENSMMUG00000006828	VARS	100	64.506	Macaca_mulatta
ENSCSEG00000019652	vars	100	64.585	ENSMNEG00000042072	VARS	100	64.506	Macaca_nemestrina
ENSCSEG00000019652	vars	100	64.664	ENSMLEG00000039307	VARS	100	64.585	Mandrillus_leucophaeus
ENSCSEG00000019652	vars	100	83.255	ENSMAMG00000003949	vars	100	83.399	Mastacembelus_armatus
ENSCSEG00000019652	vars	100	82.929	ENSMZEG00005018327	vars	100	82.024	Maylandia_zebra
ENSCSEG00000019652	vars	100	63.953	ENSMAUG00000006715	Vars	100	64.111	Mesocricetus_auratus
ENSCSEG00000019652	vars	100	64.664	ENSMICG00000003548	VARS	100	64.348	Microcebus_murinus
ENSCSEG00000019652	vars	100	62.995	ENSMOCG00000015404	Vars	100	63.154	Microtus_ochrogaster
ENSCSEG00000019652	vars	100	82.466	ENSMMOG00000015801	vars	100	82.386	Mola_mola
ENSCSEG00000019652	vars	100	64.664	ENSMODG00000015204	-	100	64.850	Monodelphis_domestica
ENSCSEG00000019652	vars	99	84.194	ENSMALG00000022532	vars	99	84.194	Monopterus_albus
ENSCSEG00000019652	vars	100	64.478	MGP_CAROLIEiJ_G0021491	Vars	100	64.557	Mus_caroli
ENSCSEG00000019652	vars	100	64.399	ENSMUSG00000007029	Vars	100	64.478	Mus_musculus
ENSCSEG00000019652	vars	100	64.478	MGP_PahariEiJ_G0020486	Vars	100	64.478	Mus_pahari
ENSCSEG00000019652	vars	100	64.478	MGP_SPRETEiJ_G0022396	Vars	100	64.557	Mus_spretus
ENSCSEG00000019652	vars	100	64.032	ENSMPUG00000010821	VARS	100	63.953	Mustela_putorius_furo
ENSCSEG00000019652	vars	78	67.206	ENSMLUG00000013126	VARS	100	67.510	Myotis_lucifugus
ENSCSEG00000019652	vars	100	64.082	ENSNGAG00000012151	Vars	100	64.218	Nannospalax_galili
ENSCSEG00000019652	vars	100	82.929	ENSNBRG00000020520	vars	100	82.929	Neolamprologus_brichardi
ENSCSEG00000019652	vars	100	64.585	ENSNLEG00000006351	VARS	100	64.743	Nomascus_leucogenys
ENSCSEG00000019652	vars	100	62.687	ENSMEUG00000011378	VARS	100	62.754	Notamacropus_eugenii
ENSCSEG00000019652	vars	100	64.427	ENSOPRG00000003607	VARS	100	64.585	Ochotona_princeps
ENSCSEG00000019652	vars	100	64.105	ENSODEG00000017681	VARS	100	64.025	Octodon_degus
ENSCSEG00000019652	vars	100	83.754	ENSONIG00000013064	vars	100	85.192	Oreochromis_niloticus
ENSCSEG00000019652	vars	76	66.867	ENSOANG00000005400	VARS	98	66.987	Ornithorhynchus_anatinus
ENSCSEG00000019652	vars	100	63.333	ENSOCUG00000022463	VARS	100	62.421	Oryctolagus_cuniculus
ENSCSEG00000019652	vars	100	81.337	ENSORLG00000013063	vars	100	81.337	Oryzias_latipes
ENSCSEG00000019652	vars	100	81.562	ENSORLG00020003504	vars	100	81.797	Oryzias_latipes_hni
ENSCSEG00000019652	vars	100	81.392	ENSORLG00015009001	vars	100	81.939	Oryzias_latipes_hsok
ENSCSEG00000019652	vars	100	82.330	ENSOMEG00000015016	vars	100	82.565	Oryzias_melastigma
ENSCSEG00000019652	vars	100	64.432	ENSOGAG00000007515	VARS	100	64.432	Otolemur_garnettii
ENSCSEG00000019652	vars	100	64.427	ENSPPAG00000034012	VARS	100	64.585	Pan_paniscus
ENSCSEG00000019652	vars	100	64.185	ENSPPRG00000014855	VARS	100	64.185	Panthera_pardus
ENSCSEG00000019652	vars	85	68.489	ENSPTIG00000010462	VARS	94	68.392	Panthera_tigris_altaica
ENSCSEG00000019652	vars	100	64.348	ENSPTRG00000017985	VARS	100	64.506	Pan_troglodytes
ENSCSEG00000019652	vars	100	63.158	ENSPANG00000014565	VARS	100	63.079	Papio_anubis
ENSCSEG00000019652	vars	100	76.965	ENSPKIG00000016304	vars	100	76.732	Paramormyrops_kingsleyae
ENSCSEG00000019652	vars	100	83.119	ENSPMGG00000023909	vars	100	83.119	Periophthalmus_magnuspinnatus
ENSCSEG00000019652	vars	100	64.032	ENSPEMG00000006639	Vars	100	64.190	Peromyscus_maniculatus_bairdii
ENSCSEG00000019652	vars	100	64.022	ENSPCIG00000018553	VARS	100	64.269	Phascolarctos_cinereus
ENSCSEG00000019652	vars	100	82.524	ENSPFOG00000015690	vars	100	82.759	Poecilia_formosa
ENSCSEG00000019652	vars	100	83.014	ENSPLAG00000009590	vars	100	82.775	Poecilia_latipinna
ENSCSEG00000019652	vars	100	82.524	ENSPMEG00000004708	vars	100	82.759	Poecilia_mexicana
ENSCSEG00000019652	vars	100	81.547	ENSPREG00000013264	vars	100	81.300	Poecilia_reticulata
ENSCSEG00000019652	vars	100	63.196	ENSPPYG00000016460	VARS	100	63.355	Pongo_abelii
ENSCSEG00000019652	vars	85	65.054	ENSPCAG00000013565	VARS	85	65.054	Procavia_capensis
ENSCSEG00000019652	vars	100	64.376	ENSPCOG00000010942	VARS	100	64.534	Propithecus_coquereli
ENSCSEG00000019652	vars	100	62.767	ENSPVAG00000012403	VARS	100	62.451	Pteropus_vampyrus
ENSCSEG00000019652	vars	100	83.007	ENSPNYG00000022511	vars	100	83.007	Pundamilia_nyererei
ENSCSEG00000019652	vars	100	79.030	ENSPNAG00000020962	vars	100	78.717	Pygocentrus_nattereri
ENSCSEG00000019652	vars	100	64.190	ENSRNOG00000000867	Vars	100	64.111	Rattus_norvegicus
ENSCSEG00000019652	vars	100	64.506	ENSRBIG00000041669	VARS	100	64.427	Rhinopithecus_bieti
ENSCSEG00000019652	vars	100	64.506	ENSRROG00000045490	VARS	100	64.427	Rhinopithecus_roxellana
ENSCSEG00000019652	vars	100	64.190	ENSSBOG00000035402	VARS	100	64.348	Saimiri_boliviensis_boliviensis
ENSCSEG00000019652	vars	100	64.044	ENSSHAG00000006937	VARS	100	64.201	Sarcophilus_harrisii
ENSCSEG00000019652	vars	100	76.695	ENSSFOG00015014272	vars	100	76.695	Scleropages_formosus
ENSCSEG00000019652	vars	100	82.864	ENSSMAG00000009596	vars	99	82.864	Scophthalmus_maximus
ENSCSEG00000019652	vars	100	84.285	ENSSDUG00000014177	vars	100	84.285	Seriola_dumerili
ENSCSEG00000019652	vars	100	84.050	ENSSLDG00000025316	vars	100	84.050	Seriola_lalandi_dorsalis
ENSCSEG00000019652	vars	100	85.263	ENSSPAG00000017068	vars	100	85.057	Stegastes_partitus
ENSCSEG00000019652	vars	100	63.981	ENSSSCG00000038950	VARS	100	64.139	Sus_scrofa
ENSCSEG00000019652	vars	81	80.792	ENSTRUG00000012307	vars	96	80.769	Takifugu_rubripes
ENSCSEG00000019652	vars	100	82.199	ENSTNIG00000008011	vars	100	82.199	Tetraodon_nigroviridis
ENSCSEG00000019652	vars	100	58.340	ENSTTRG00000014128	VARS	100	58.340	Tursiops_truncatus
ENSCSEG00000019652	vars	100	62.549	ENSUAMG00000010424	VARS	100	62.470	Ursus_americanus
ENSCSEG00000019652	vars	100	59.084	ENSUMAG00000013486	VARS	100	58.934	Ursus_maritimus
ENSCSEG00000019652	vars	100	63.972	ENSVVUG00000021323	VARS	100	63.658	Vulpes_vulpes
ENSCSEG00000019652	vars	100	63.141	ENSXETG00000024076	vars	100	63.220	Xenopus_tropicalis
ENSCSEG00000019652	vars	100	82.578	ENSXCOG00000019172	vars	100	82.816	Xiphophorus_couchianus
ENSCSEG00000019652	vars	100	82.132	ENSXMAG00000010927	vars	100	82.367	Xiphophorus_maculatus